pycom11g23240

Polynucleotide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0005030
Physical Location & Seq
Forward (+)
26260399 .. 26266582
6184 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g23240.7

Sequence Viewer

Length: 1164 bp
ATGCTAACCATACCCACCTGCAACTCTATCTTCACCCGCCTGATTCCCTTCCTCCCCAAAAACCCTAATTCCCCGAAACCCTCTCCGACACGTTTCGTCAATTTCCACACCCCGAAACGTTTCGCTTGTGTCGGCCTCCACACACTACCAATGTCGGCTTCTTCTTCGACCAAATTAGCGGTGGAGTACGCGAAGTCGAAGAGGTCATCGTGCAAAAAGTGCTCGGAACCGATCGCCGCCCAGGCTCTACGGCTGGGGTTGGTCAGCAGAGACCCTAAAGGTTTCGATGTGACCAAATGGCACCATTTGGATTGCTTCAATTTTGGGTCCGACTTGGTTGCTTCGGTTGAGAAGATTAAAGGGTTTCAGTCTTTGAAGAGCAGTGATCAGGAGGCTTTGAAGAAGTTAGTGGGTGAATCTCAAGAGGAGGTACAGTTTGATTTTCTGTCATTTCGCGCTTTCGATTTTGATGAAAATGAAAATGAAATAGAGGAAAGCAGTCCGAAGAAAGCAAAGTCCTCTAAATTTGATGGACAGGCTAAGCTGGAAATATCCTTTTCAGTTTCTGAAGTGAAAGACAAGTACAAGGATGCAACTCTTTCACCTAAATGGAAGGCATTTCAAACAATCATATTTCTTGAACGGGATGAAGGTCTACATGATTCAAGTAAAATTGCTGCCTTTGATTTTGATGGATGTCTAGCCAACACTAATGTAAAGAGAGTAGGTCCTGATGCTTGGTCTCTTATGTCTCCTTCAATACCTGATAAGCTACAGAGCCTGTACAAAGATGGCTACAAGCTGGTAATCTTTACGAATGAATCCAACATAGAGCGCTGGAAGAATAAGAGACAGGTAGCTGTGGACTCAAAAATTGGGCGCCTCAACAATTTTATTGAGCAAGTAAAGGTCCCAATTCAGGTTTTCATAGCTTGTGGCCTAGGCAAAGTCGGTAAAGCAGATGACCCCTTTCGCAAGCCCAAACCGGGGATGTGGCATATTTTGGAACAACACTTCAACTCTGGCATTTCCATCGACATGGATCAATCCTTTTATGTTGGTGATGCAGCCGGGAGACAAAAAGATCATAGTGATGCTGATATTAAATTTGCGGAGGCCGTTGGTGTTAAGTTTTACGTCCCAGAGGAATACTTTGGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0006979 GO:0008150 GO:0008152 GO:0009117 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010638 GO:0010835 GO:0010836 GO:0016301 GO:0016310 GO:0016311 GO:0016740 GO:0016772 GO:0016773 GO:0016787 GO:0016788 GO:0016791 GO:0019205 GO:0019219 GO:0019222 GO:0019637 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031400 GO:0031974 GO:0031981 GO:0032204 GO:0032206 GO:0032210 GO:0032212 GO:0032268 GO:0032269 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0042578 GO:0042769 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045935 GO:0046403 GO:0046404 GO:0046483 GO:0046939 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051338 GO:0051347 GO:0051606 GO:0051716 GO:0051731 GO:0051733 GO:0051734 GO:0051972 GO:0051973 GO:0055086 GO:0060255 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0098501 GO:0098502 GO:0098503 GO:0098504 GO:0098506 GO:0098518 GO:1901360 GO:1901363 GO:1904353 GO:1904355 GO:1904356 GO:1904358 GO:2000112 GO:2000278 GO:2000573 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNK3P zf-PARP

Protein Analysis

388

Amino Acids

43.46

Weight (kDa)

8.63

Isoelectric Point (pI)

50.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 26
Acc36I ACCTGC 1 cut(s) 26
AccB1I GGYRCC 2 cut(s) 300, 879
AccI GTMKAC 1 cut(s) 655
AccII CGCG 2 cut(s) 191, 456
AciI CCGC 4 cut(s) 37, 179, 237, 1112
AclI AACGTT 1 cut(s) 118
AclWI GGATC 1 cut(s) 1050
AcsI RAATTY 2 cut(s) 524, 1106
AcuI CTGAAG 1 cut(s) 588
AcyI GRCGYC 1 cut(s) 880
AfaI GTAC 4 cut(s) 188, 432, 584, 785
AfeI AGCGCT 1 cut(s) 836
AfiI CCNNNNNNNGG 3 cut(s) 919, 986, 987
AflIII ACRYGT 1 cut(s) 89
AgsI TTSAA 8 cut(s) 319, 376, 400, 623, 641, 666, 759, 1018
AjnI CCWGG 1 cut(s) 240
AjuI GAANNNNNNNTTGG 2 cut(s) 142, 174
AluBI AGCT 5 cut(s) 544, 772, 802, 860, 932
AluI AGCT 5 cut(s) 544, 772, 802, 860, 932
Alw21I GWGCWC 1 cut(s) 224
Alw26I GTCTC 5 cut(s) 264, 747, 756, 844, 1069
AlwI GGATC 1 cut(s) 1050
AlwNI CAGNNNCTG 2 cut(s) 566, 781
Aor51HI AGCGCT 1 cut(s) 836
AoxI GGCC 3 cut(s) 133, 937, 1116
ApeKI GCWGC 2 cut(s) 677, 1067
ApoI RAATTY 2 cut(s) 524, 1106
Asp700I GAANNNNTTC 1 cut(s) 119
AspA2I CCTAGG 1 cut(s) 940
AspLEI GCGC 3 cut(s) 458, 837, 882
AspS9I GGNCC 3 cut(s) 327, 728, 910
AsuC2I CCSGG 2 cut(s) 987, 1072
AsuHPI GGTGA 4 cut(s) 25, 425, 594, 1073
AvaII GGWCC 3 cut(s) 327, 728, 910
AvrII CCTAGG 1 cut(s) 940
BanI GGYRCC 2 cut(s) 300, 879
Bbv12I GWGCWC 1 cut(s) 224
BbvI GCAGC 2 cut(s) 664, 1079
BccI CCATC 4 cut(s) 524, 686, 785, 1040
BceAI ACGGC 2 cut(s) 266, 1103
BcgI CGANNNNNNTGC 4 cut(s) 320, 354, 1015, 1049
BciT130I CCWGG 1 cut(s) 242
BclI TGATCA 1 cut(s) 385
BcnI CCSGG 2 cut(s) 987, 1072
BcoDI GTCTC 5 cut(s) 264, 747, 756, 844, 1069
BfaI CTAG 2 cut(s) 701, 941
BfmI CTRYAG 1 cut(s) 773
BfoI RGCGCY 2 cut(s) 838, 883
BfuAI ACCTGC 1 cut(s) 26
BglI GCCNNNNNGGC 1 cut(s) 242
BisI GCNGC 3 cut(s) 237, 678, 1068
BlnI CCTAGG 1 cut(s) 940
BlpI GCTNAGC 1 cut(s) 540
BlsI GCNGC 3 cut(s) 238, 679, 1069
Bme1390I CCNGG 3 cut(s) 242, 987, 1072
Bme18I GGWCC 3 cut(s) 327, 728, 910
BmgT120I GGNCC 3 cut(s) 327, 728, 910
BmiI GGNNCC 5 cut(s) 228, 302, 328, 881, 912
BmrFI CCNGG 3 cut(s) 242, 987, 1072
BmsI GCATC 4 cut(s) 580, 724, 1054, 1084
Bpu1102I GCTNAGC 1 cut(s) 540
BpuEI CTTGAG 1 cut(s) 405
BpuMI CCSGG 2 cut(s) 987, 1072
BsaHI GRCGYC 1 cut(s) 880
BsaI GGTCTC 2 cut(s) 264, 747
BsaJI CCNNGG 3 cut(s) 240, 940, 986
BsaXI ACNNNNNCTCC 2 cut(s) 419, 449
Bsc4I CCNNNNNNNGG 3 cut(s) 919, 986, 987
BseBI CCWGG 1 cut(s) 242
BseDI CCNNGG 3 cut(s) 240, 940, 986
BseGI GGATG 4 cut(s) 595, 652, 701, 996
BseLI CCNNNNNNNGG 3 cut(s) 919, 986, 987
BseRI GAGGAG 1 cut(s) 440
BseXI GCAGC 2 cut(s) 664, 1079
BseYI CCCAGC 1 cut(s) 253
Bsh1236I CGCG 2 cut(s) 191, 456
Bsh1285I CGRYCG 1 cut(s) 234
BshFI GGCC 3 cut(s) 135, 939, 1118
BshNI GGYRCC 2 cut(s) 300, 879
BsiEI CGRYCG 1 cut(s) 234
BsiHKAI GWGCWC 1 cut(s) 224
BsiSI CCGG 2 cut(s) 986, 1071
BslFI GGGAC 2 cut(s) 896, 1124
BslI CCNNNNNNNGG 3 cut(s) 919, 986, 987
BsmAI GTCTC 5 cut(s) 264, 747, 756, 844, 1069
BsmFI GGGAC 2 cut(s) 896, 1124
BsnI GGCC 3 cut(s) 135, 939, 1118
Bso31I GGTCTC 2 cut(s) 264, 747
Bsp1286I GDGCHC 1 cut(s) 224
Bsp1407I TGTACA 1 cut(s) 783
Bsp143I GATC 4 cut(s) 231, 385, 1042, 1084
Bsp1720I GCTNAGC 1 cut(s) 540
BspACI CCGC 4 cut(s) 37, 179, 237, 1112
BspANI GGCC 3 cut(s) 135, 939, 1118
BspFNI CGCG 2 cut(s) 191, 456
BspLI GGNNCC 5 cut(s) 228, 302, 328, 881, 912
BspMI ACCTGC 1 cut(s) 26
BspPI GGATC 1 cut(s) 1050
BspQI GCTCTTC 1 cut(s) 371
BspT107I GGYRCC 2 cut(s) 300, 879
BspTNI GGTCTC 2 cut(s) 264, 747
BsrGI TGTACA 1 cut(s) 783
BssECI CCNNGG 3 cut(s) 240, 940, 986
BssMI GATC 4 cut(s) 231, 385, 1042, 1084
BssNI GRCGYC 1 cut(s) 880
BssT1I CCWWGG 1 cut(s) 940
Bst2UI CCWGG 1 cut(s) 242
Bst4CI ACNGT 1 cut(s) 435
Bst6I CTCTTC 2 cut(s) 194, 371
BstACI GRCGYC 1 cut(s) 880
BstAPI GCANNNNNTGC 1 cut(s) 219
BstAUI TGTACA 1 cut(s) 783
BstC8I GCNNGC 1 cut(s) 977
BstDEI CTNAG 1 cut(s) 540
BstF5I GGATG 4 cut(s) 595, 652, 701, 996
BstFNI CGCG 2 cut(s) 191, 456
BstH2I RGCGCY 2 cut(s) 838, 883
BstHHI GCGC 3 cut(s) 458, 837, 882
BstKTI GATC 4 cut(s) 234, 388, 1045, 1087
BstMAI GTCTC 5 cut(s) 264, 747, 756, 844, 1069
BstMBI GATC 4 cut(s) 231, 385, 1042, 1084
BstMCI CGRYCG 1 cut(s) 234
BstMWI GCNNNNNNNGC 2 cut(s) 219, 242
BstNI CCWGG 1 cut(s) 242
BstSCI CCNGG 3 cut(s) 240, 985, 1070
BstSFI CTRYAG 1 cut(s) 773
BstUI CGCG 2 cut(s) 191, 456
BstV1I GCAGC 2 cut(s) 664, 1079
BstXI CCANNNNNNTGG 1 cut(s) 1039
BsuRI GGCC 3 cut(s) 135, 939, 1118
BtsCI GGATG 4 cut(s) 595, 652, 701, 996
BtsI GCAGTG 1 cut(s) 388
BtsIMutI CAGTG 1 cut(s) 388
BveI ACCTGC 1 cut(s) 26
Cac8I GCNNGC 1 cut(s) 977
CaiI CAGNNNCTG 2 cut(s) 566, 781
CfoI GCGC 3 cut(s) 458, 837, 882
Cfr13I GGNCC 3 cut(s) 327, 728, 910
Csp6I GTAC 4 cut(s) 187, 431, 583, 784
CviAII CATG 2 cut(s) 659, 1039
CviQI GTAC 4 cut(s) 187, 431, 583, 784
DdeI CTNAG 1 cut(s) 540
DinI GGCGCC 1 cut(s) 881
DpnI GATC 4 cut(s) 233, 387, 1044, 1086
DpnII GATC 4 cut(s) 231, 385, 1042, 1084
Eam1104I CTCTTC 2 cut(s) 194, 371
EarI CTCTTC 2 cut(s) 194, 371
Eco130I CCWWGG 1 cut(s) 940
Eco31I GGTCTC 2 cut(s) 264, 747
Eco47I GGWCC 3 cut(s) 327, 728, 910
Eco47III AGCGCT 1 cut(s) 836
Eco57I CTGAAG 1 cut(s) 588
EcoO109I RGGNCCY 2 cut(s) 728, 910
EcoRII CCWGG 1 cut(s) 240
EcoT14I CCWWGG 1 cut(s) 940
EgeI GGCGCC 1 cut(s) 881
EheI GGCGCC 1 cut(s) 881
ErhI CCWWGG 1 cut(s) 940
FaeI CATG 2 cut(s) 662, 1042
FaqI GGGAC 2 cut(s) 896, 1124
FatI CATG 2 cut(s) 658, 1038
FauI CCCGC 1 cut(s) 44
FbaI TGATCA 1 cut(s) 385
FblI GTMKAC 1 cut(s) 655
Fnu4HI GCNGC 3 cut(s) 237, 678, 1068
FokI GGATG 4 cut(s) 602, 659, 708, 1003
Fsp4HI GCNGC 3 cut(s) 237, 678, 1068
FspBI CTAG 2 cut(s) 701, 941
GlaI GCGC 3 cut(s) 457, 836, 881
GluI GCNGC 3 cut(s) 237, 678, 1068
GsaI CCCAGC 1 cut(s) 257
HaeII RGCGCY 2 cut(s) 838, 883
HaeIII GGCC 3 cut(s) 135, 939, 1118
HapII CCGG 2 cut(s) 986, 1071
HhaI GCGC 3 cut(s) 458, 837, 882
Hin1I GRCGYC 1 cut(s) 880
Hin1II CATG 2 cut(s) 662, 1042
Hin6I GCGC 3 cut(s) 456, 835, 880
HinP1I GCGC 3 cut(s) 456, 835, 880
HinfI GANTC 5 cut(s) 43, 416, 662, 821, 866
HpaII CCGG 2 cut(s) 986, 1071
HphI GGTGA 4 cut(s) 25, 425, 594, 1073
Hpy166II GTNNAC 2 cut(s) 656, 865
Hpy188I TCNGA 5 cut(s) 87, 226, 331, 504, 568
Hpy188III TCNNGA 4 cut(s) 389, 422, 638, 731
Hpy8I GTNNAC 2 cut(s) 656, 865
HpyAV CCTTC 4 cut(s) 58, 607, 644, 765
HpyCH4III ACNGT 1 cut(s) 435
HpyCH4IV ACGT 3 cut(s) 91, 118, 1137
HpyCH4V TGCA 4 cut(s) 21, 213, 593, 1067
HpyF10VI GCNNNNNNNGC 2 cut(s) 219, 242
HpyF3I CTNAG 1 cut(s) 540
HpySE526I ACGT 3 cut(s) 91, 118, 1137
Hsp92I GRCGYC 1 cut(s) 880
Hsp92II CATG 2 cut(s) 662, 1042
HspAI GCGC 3 cut(s) 456, 835, 880
KasI GGCGCC 1 cut(s) 879
Ksp22I TGATCA 1 cut(s) 385
Kzo9I GATC 4 cut(s) 231, 385, 1042, 1084
LguI GCTCTTC 1 cut(s) 371
Lsp1109I GCAGC 2 cut(s) 664, 1079
LweI GCATC 4 cut(s) 580, 724, 1054, 1084
MaeI CTAG 2 cut(s) 701, 941
MaeII ACGT 3 cut(s) 91, 118, 1137
MaeIII GTNAC 1 cut(s) 289
MalI GATC 4 cut(s) 233, 387, 1044, 1086
MboI GATC 4 cut(s) 231, 385, 1042, 1084
MboII GAAGA 9 cut(s) 22, 153, 156, 211, 364, 388, 412, 517, 853
MhlI GDGCHC 1 cut(s) 224
Mly113I GGCGCC 1 cut(s) 880
MlyI GAGTC 1 cut(s) 860
MmeI TCCRAC 3 cut(s) 110, 354, 849
MroXI GAANNNNTTC 1 cut(s) 119
MseI TTAA 3 cut(s) 357, 1104, 1128
MslI CAYNNNNRTG 3 cut(s) 607, 1037, 1092
MspI CCGG 2 cut(s) 986, 1071
MspR9I CCNGG 3 cut(s) 242, 987, 1072
MvaI CCWGG 1 cut(s) 242
MvnI CGCG 2 cut(s) 191, 456
MwoI GCNNNNNNNGC 2 cut(s) 219, 242
NarI GGCGCC 1 cut(s) 880
NciI CCSGG 2 cut(s) 987, 1072
NdeII GATC 4 cut(s) 231, 385, 1042, 1084
NlaIII CATG 2 cut(s) 662, 1042
NlaIV GGNNCC 5 cut(s) 228, 302, 328, 881, 912
NmuCI GTSAC 1 cut(s) 289
PaqCI CACCTGC 1 cut(s) 26
PciSI GCTCTTC 1 cut(s) 371
PdmI GAANNNNTTC 1 cut(s) 119
PfeI GAWTC 4 cut(s) 43, 416, 662, 821
PkrI GCNGC 3 cut(s) 238, 679, 1069
Ple19I CGATCG 1 cut(s) 234
PleI GAGTC 1 cut(s) 860
PluTI GGCGCC 1 cut(s) 883
PpsI GAGTC 1 cut(s) 860
PpuMI RGGWCCY 2 cut(s) 728, 910
Psp1406I AACGTT 1 cut(s) 118
Psp5II RGGWCCY 2 cut(s) 728, 910
Psp6I CCWGG 1 cut(s) 240
PspFI CCCAGC 1 cut(s) 253
PspGI CCWGG 1 cut(s) 240
PspN4I GGNNCC 5 cut(s) 228, 302, 328, 881, 912
PspPI GGNCC 3 cut(s) 327, 728, 910
PspPPI RGGWCCY 2 cut(s) 728, 910
PstNI CAGNNNCTG 2 cut(s) 566, 781
PvuI CGATCG 1 cut(s) 234
RsaI GTAC 4 cut(s) 188, 432, 584, 785
RsaNI GTAC 4 cut(s) 187, 431, 583, 784
RseI CAYNNNNRTG 3 cut(s) 607, 1037, 1092
SapI GCTCTTC 1 cut(s) 371
SaqAI TTAA 3 cut(s) 357, 1104, 1128
SatI GCNGC 3 cut(s) 237, 678, 1068
Sau3AI GATC 4 cut(s) 231, 385, 1042, 1084
Sau96I GGNCC 3 cut(s) 327, 728, 910
SchI GAGTC 1 cut(s) 860
ScrFI CCNGG 3 cut(s) 242, 987, 1072
SduI GDGCHC 1 cut(s) 224
SfaNI GCATC 4 cut(s) 580, 724, 1054, 1084
SfcI CTRYAG 1 cut(s) 773
SfoI GGCGCC 1 cut(s) 881
SinI GGWCC 3 cut(s) 327, 728, 910
SmiMI CAYNNNNRTG 3 cut(s) 607, 1037, 1092
SmlI CTYRAG 1 cut(s) 420
SmoI CTYRAG 1 cut(s) 420
SsiI CCGC 4 cut(s) 37, 179, 237, 1112
SspDI GGCGCC 1 cut(s) 879
SspMI CTAG 2 cut(s) 701, 941
StyD4I CCNGG 3 cut(s) 240, 985, 1070
StyI CCWWGG 1 cut(s) 940
TaaI ACNGT 1 cut(s) 435
TaiI ACGT 3 cut(s) 94, 121, 1140
TaqI TCGA 5 cut(s) 167, 197, 285, 462, 1035
TatI WGTACW 2 cut(s) 582, 783
TauI GCSGC 1 cut(s) 239
TfiI GAWTC 4 cut(s) 43, 416, 662, 821
Tru1I TTAA 3 cut(s) 357, 1104, 1128
Tru9I TTAA 3 cut(s) 357, 1104, 1128
TscAI CASTG 1 cut(s) 388
TseFI GTSAC 1 cut(s) 289
TseI GCWGC 2 cut(s) 677, 1067
Tsp45I GTSAC 1 cut(s) 289
TspDTI ATGAA 6 cut(s) 486, 492, 498, 663, 834, 916
TspRI CASTG 1 cut(s) 388
VpaK11BI GGWCC 3 cut(s) 327, 728, 910
XapI RAATTY 2 cut(s) 524, 1106
XcmI CCANNNNNNNNNTGG 1 cut(s) 178
XmaJI CCTAGG 1 cut(s) 940
XmiI GTMKAC 1 cut(s) 655
XmnI GAANNNNTTC 1 cut(s) 119
XspI CTAG 2 cut(s) 701, 941
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.