Rw4G027950

Polynucleotide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0005030
Physical Location & Seq
Reverse (-)
54671506 .. 54672291
786 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G027950.1

Sequence Viewer

Length: 357 bp
ATGAATTCTTTTAGTTCTTATCATCAACTTGATCATTCTGTATTTCACTTGCAGGTATCTAACCTGGAAATATCCTTTTCAGTGTCTGATGTGAAGGACAAGTACAAGGTTTTCATAGCTTGTGGGACGAGTCAAGGAGAAGACCCCTTTCGCAAACCCAAACCGGGGTTGTGGCATATGTTGGAACAACACTTCAACTCTGGCATTTCCATTGATATGAAACAATCTTTTTATGTTGGTGATGCTGCTGGAAGAAGCAATGACCACAGTGATGCTGTCTTAAGTTTGCAGAGGTACAAATTAAAGTTTTATTTATTATATTTTATGCTCCAATTGTATTCATTGTTGCATACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0006979 GO:0008150 GO:0008152 GO:0009117 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010638 GO:0010835 GO:0010836 GO:0016301 GO:0016310 GO:0016311 GO:0016740 GO:0016772 GO:0016773 GO:0016787 GO:0016788 GO:0016791 GO:0019205 GO:0019219 GO:0019222 GO:0019637 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031400 GO:0031974 GO:0031981 GO:0032204 GO:0032206 GO:0032210 GO:0032212 GO:0032268 GO:0032269 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0042578 GO:0042769 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045935 GO:0046403 GO:0046404 GO:0046483 GO:0046939 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051338 GO:0051347 GO:0051606 GO:0051716 GO:0051731 GO:0051733 GO:0051734 GO:0051972 GO:0051973 GO:0055086 GO:0060255 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0098501 GO:0098502 GO:0098503 GO:0098504 GO:0098506 GO:0098518 GO:1901360 GO:1901363 GO:1904353 GO:1904355 GO:1904356 GO:1904358 GO:2000112 GO:2000278 GO:2000573 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNK3P zf-PARP

Protein Analysis

118

Amino Acids

13.66

Weight (kDa)

7.05

Isoelectric Point (pI)

41.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PNK3P PF08645 28 - 92 1.7e-15 Polynucleotide kinase 3 phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 43
AcsI RAATTY 1 cut(s) 4
AfaI GTAC 2 cut(s) 104, 296
AfiI CCNNNNNNNGG 2 cut(s) 164, 165
AflII CTTAAG 1 cut(s) 280
AgsI TTSAA 1 cut(s) 196
AjnI CCWGG 1 cut(s) 63
AluBI AGCT 1 cut(s) 119
AluI AGCT 1 cut(s) 119
AlwNI CAGNNNCTG 1 cut(s) 86
ApeKI GCWGC 1 cut(s) 245
ApoI RAATTY 1 cut(s) 4
AsuC2I CCSGG 1 cut(s) 165
AsuHPI GGTGA 1 cut(s) 251
BarI GAAGNNNNNNTAC 2 cut(s) 86, 118
BbsI GAAGAC 1 cut(s) 147
BbvI GCAGC 1 cut(s) 232
BciT130I CCWGG 1 cut(s) 65
BclI TGATCA 1 cut(s) 31
BcnI CCSGG 1 cut(s) 165
BfrI CTTAAG 1 cut(s) 280
BfuAI ACCTGC 1 cut(s) 43
BisI GCNGC 1 cut(s) 246
BlsI GCNGC 1 cut(s) 247
Bme1390I CCNGG 2 cut(s) 65, 165
BmrFI CCNGG 2 cut(s) 65, 165
BmsI GCATC 2 cut(s) 232, 262
BpiI GAAGAC 1 cut(s) 147
BpuMI CCSGG 1 cut(s) 165
BsaJI CCNNGG 1 cut(s) 164
Bsc4I CCNNNNNNNGG 2 cut(s) 164, 165
Bse3DI GCAATG 1 cut(s) 265
BseBI CCWGG 1 cut(s) 65
BseDI CCNNGG 1 cut(s) 164
BseLI CCNNNNNNNGG 2 cut(s) 164, 165
BseMI GCAATG 1 cut(s) 265
BseXI GCAGC 1 cut(s) 232
BsiSI CCGG 1 cut(s) 164
BslFI GGGAC 1 cut(s) 139
BslI CCNNNNNNNGG 2 cut(s) 164, 165
BsmFI GGGAC 1 cut(s) 139
Bsp143I GATC 1 cut(s) 31
BspMI ACCTGC 1 cut(s) 43
BspTI CTTAAG 1 cut(s) 280
BsrDI GCAATG 1 cut(s) 265
BssECI CCNNGG 1 cut(s) 164
BssMI GATC 1 cut(s) 31
Bst2UI CCWGG 1 cut(s) 65
Bst4CI ACNGT 1 cut(s) 269
BstAFI CTTAAG 1 cut(s) 280
BstKTI GATC 1 cut(s) 34
BstMBI GATC 1 cut(s) 31
BstNI CCWGG 1 cut(s) 65
BstSCI CCNGG 2 cut(s) 63, 163
BstV1I GCAGC 1 cut(s) 232
BstV2I GAAGAC 1 cut(s) 147
BtsIMutI CAGTG 2 cut(s) 87, 274
BveI ACCTGC 1 cut(s) 43
CaiI CAGNNNCTG 1 cut(s) 86
Csp6I GTAC 2 cut(s) 103, 295
CviJI RGCY 1 cut(s) 119
CviKI_1 RGCY 1 cut(s) 119
CviQI GTAC 2 cut(s) 103, 295
DpnI GATC 1 cut(s) 33
DpnII GATC 1 cut(s) 31
EcoRI GAATTC 1 cut(s) 4
EcoRII CCWGG 1 cut(s) 63
FaiI YATR 8 cut(s) 116, 177, 179, 218, 234, 319, 326, 351
FaqI GGGAC 1 cut(s) 139
FauNDI CATATG 1 cut(s) 177
FbaI TGATCA 1 cut(s) 31
Fnu4HI GCNGC 1 cut(s) 246
Fsp4HI GCNGC 1 cut(s) 246
GluI GCNGC 1 cut(s) 246
HapII CCGG 1 cut(s) 164
HinfI GANTC 1 cut(s) 130
HpaII CCGG 1 cut(s) 164
HphI GGTGA 1 cut(s) 251
Hpy188I TCNGA 1 cut(s) 88
HpyAV CCTTC 1 cut(s) 88
HpyCH4III ACNGT 1 cut(s) 269
HpyCH4V TGCA 3 cut(s) 52, 289, 349
Ksp22I TGATCA 1 cut(s) 31
Kzo9I GATC 1 cut(s) 31
LmnI GCTCC 1 cut(s) 333
LpnPI CCDG 6 cut(s) 38, 50, 77, 177, 186, 234
Lsp1109I GCAGC 1 cut(s) 232
LweI GCATC 2 cut(s) 232, 262
MalI GATC 1 cut(s) 33
MboI GATC 1 cut(s) 31
MboII GAAGA 2 cut(s) 152, 264
MfeI CAATTG 1 cut(s) 332
MluCI AATT 3 cut(s) 4, 299, 332
MlyI GAGTC 1 cut(s) 139
MmeI TCCRAC 1 cut(s) 162
MnlI CCTC 1 cut(s) 285
MseI TTAA 3 cut(s) 281, 302, 355
MslI CAYNNNNRTG 2 cut(s) 215, 270
MspCI CTTAAG 1 cut(s) 280
MspI CCGG 1 cut(s) 164
MspR9I CCNGG 2 cut(s) 65, 165
MunI CAATTG 1 cut(s) 332
MvaI CCWGG 1 cut(s) 65
NciI CCSGG 1 cut(s) 165
NdeI CATATG 1 cut(s) 177
NdeII GATC 1 cut(s) 31
PkrI GCNGC 1 cut(s) 247
PleI GAGTC 1 cut(s) 138
PpsI GAGTC 1 cut(s) 138
Psp6I CCWGG 1 cut(s) 63
PspGI CCWGG 1 cut(s) 63
PstNI CAGNNNCTG 1 cut(s) 86
RsaI GTAC 2 cut(s) 104, 296
RsaNI GTAC 2 cut(s) 103, 295
RseI CAYNNNNRTG 2 cut(s) 215, 270
SaqAI TTAA 3 cut(s) 281, 302, 355
SatI GCNGC 1 cut(s) 246
Sau3AI GATC 1 cut(s) 31
SchI GAGTC 1 cut(s) 139
ScrFI CCNGG 2 cut(s) 65, 165
SetI ASST 5 cut(s) 57, 66, 111, 121, 296
SfaNI GCATC 2 cut(s) 232, 262
SmiMI CAYNNNNRTG 2 cut(s) 215, 270
SmlI CTYRAG 1 cut(s) 280
SmoI CTYRAG 1 cut(s) 280
Sse9I AATT 3 cut(s) 4, 299, 332
StyD4I CCNGG 2 cut(s) 63, 163
TaaI ACNGT 1 cut(s) 269
TasI AATT 3 cut(s) 4, 299, 332
TatI WGTACW 1 cut(s) 102
Tru1I TTAA 3 cut(s) 281, 302, 355
Tru9I TTAA 3 cut(s) 281, 302, 355
TscAI CASTG 2 cut(s) 87, 274
TseI GCWGC 1 cut(s) 245
TspDTI ATGAA 4 cut(s) 17, 103, 233, 330
TspRI CASTG 2 cut(s) 87, 274
Vha464I CTTAAG 1 cut(s) 280
XapI RAATTY 1 cut(s) 4
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.