Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8381907.1

Orthogroup ID

OG0005030

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 868

Gene Structure 868 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8381907.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

atgtcttcttcttcttcttcgacccatgtcaccgccgagtacgccaagtccaacaggtcctcttgcaagaagtgctcgaaaaagatcgaggccaaagctctgaggctgggcttggtcaccagagacgcgcgtgggtttgacgcgatcaagtggcaccacctgggttgcttcagttttgggtccgagttggttgcttcggttgacaagattaaagggtttcagtctctgaagagcagtgatcaggaagctttgaagaatttggtggatgaatttgagaaatccaaagaggaggattcaaatggaaagaaaggttctcaaaaacaaaaggtttgtgaagtagatgaagatgaaaatgaagtaggggaaagggatttgaagaaagcgaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003950 GO:0006464 GO:0006471 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016740 GO:0016757 GO:0016763 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0070212 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03410 ko04210 ko04212 ko04214 ko04217 map03410 map04210 map04212 map04214 map04217

Pfam Domains

Protein Families

BRCT PADR1 PARP PARP_reg WGR zf-PARP

Protein Analysis

129

Amino Acids

14.29

Weight (kDa)

8.62

Isoelectric Point (pI)

40.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14890 AT3G14890
fragaria_vesca	FvH4_3g18270 FvH4_3g18270 FvH4_3g18270 FvH4_3g18270 FvH4_3g18270 FvH4_3g18270
malus_domestica	MD11G1263900.v1.1
prunus_persica	Prupe.4G164600_v2.0.a1
pyrus_communis	pycom11g23240
rosa_chinensis	RchiOBHm_Chr1g0352751 RchiOBHm_Chr5g0030901
rosa_laevigata	RLG00000033264
rosa_multiflora	Rmu_co8379571.1_g000001 Rmu_co8381907.1_g000001 Rmu_sc0001974.1_g000024 Rmu_sc0007903.1_g000004
rosa_roxburghii	Rroxscaffold_1G00049370
rosa_rugosa	Rorug05G0121400
rosa_samantha	Rh2AG245900 Rh2DG254200 Rh5AG214500 Rh5AG510900 Rh5BG213500 Rh5CG237400 Rh5DG218000
rosa_wichuraiana	Rw1G007780 Rw4G027950 Rw5G019610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	153
AccII	CGCG	3 cut(s)	128, 130, 143
AciI	CCGC	1 cut(s)	33
AcsI	RAATTY	2 cut(s)	256, 269
AcuI	CTGAAG	2 cut(s)	154, 248
AfaI	GTAC	1 cut(s)	41
AgsI	TTSAA	3 cut(s)	253, 297, 376
AjnI	CCWGG	1 cut(s)	159
AluBI	AGCT	2 cut(s)	98, 248
AluI	AGCT	2 cut(s)	98, 248
Alw21I	GWGCWC	1 cut(s)	77
Alw26I	GTCTC	2 cut(s)	117, 228
AlwNI	CAGNNNCTG	1 cut(s)	226
AoxI	GGCC	1 cut(s)	90
ApoI	RAATTY	2 cut(s)	256, 269
AspLEI	GCGC	1 cut(s)	130
AspS9I	GGNCC	2 cut(s)	57, 180
AsuHPI	GGTGA	2 cut(s)	22, 109
AvaII	GGWCC	2 cut(s)	57, 180
BanI	GGYRCC	1 cut(s)	153
Bbv12I	GWGCWC	1 cut(s)	77
BcgI	CGANNNNNNTGC	2 cut(s)	173, 207
BciT130I	CCWGG	1 cut(s)	161
BclI	TGATCA	1 cut(s)	238
BcoDI	GTCTC	2 cut(s)	117, 228
Bme1390I	CCNGG	1 cut(s)	161
Bme18I	GGWCC	2 cut(s)	57, 180
BmgT120I	GGNCC	2 cut(s)	57, 180
BmiI	GGNNCC	2 cut(s)	155, 181
BmrFI	CCNGG	1 cut(s)	161
BoxI	GACNNNNGTC	1 cut(s)	26
BsaJI	CCNNGG	1 cut(s)	160
BseBI	CCWGG	1 cut(s)	161
BseDI	CCNNGG	1 cut(s)	160
BseGI	GGATG	1 cut(s)	271
BseMII	CTCAG	1 cut(s)	92
BseRI	GAGGAG	1 cut(s)	302
BseYI	CCCAGC	1 cut(s)	106
Bsh1236I	CGCG	3 cut(s)	128, 130, 143
BshFI	GGCC	1 cut(s)	92
BshNI	GGYRCC	1 cut(s)	153
BsiHKAI	GWGCWC	1 cut(s)	77
BsmAI	GTCTC	2 cut(s)	117, 228
BsmBI	CGTCTC	1 cut(s)	117
BsnI	GGCC	1 cut(s)	92
Bsp1286I	GDGCHC	1 cut(s)	77
Bsp143I	GATC	3 cut(s)	84, 144, 238
BspACI	CCGC	1 cut(s)	33
BspANI	GGCC	1 cut(s)	92
BspCNI	CTCAG	1 cut(s)	93
BspFNI	CGCG	3 cut(s)	128, 130, 143
BspLI	GGNNCC	2 cut(s)	155, 181
BspQI	GCTCTTC	1 cut(s)	224
BspT107I	GGYRCC	1 cut(s)	153
BssECI	CCNNGG	1 cut(s)	160
BssMI	GATC	3 cut(s)	84, 144, 238
Bst2UI	CCWGG	1 cut(s)	161
Bst6I	CTCTTC	1 cut(s)	224
BstAPI	GCANNNNNTGC	1 cut(s)	72
BstDEI	CTNAG	1 cut(s)	101
BstEII	GGTNACC	1 cut(s)	115
BstF5I	GGATG	1 cut(s)	271
BstFNI	CGCG	3 cut(s)	128, 130, 143
BstHHI	GCGC	1 cut(s)	130
BstKTI	GATC	3 cut(s)	87, 147, 241
BstMAI	GTCTC	2 cut(s)	117, 228
BstMBI	GATC	3 cut(s)	84, 144, 238
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 72
BstNI	CCWGG	1 cut(s)	161
BstPAI	GACNNNNGTC	1 cut(s)	26
BstPI	GGTNACC	1 cut(s)	115
BstSCI	CCNGG	1 cut(s)	159
BstUI	CGCG	3 cut(s)	128, 130, 143
BsuRI	GGCC	1 cut(s)	92
BtsCI	GGATG	1 cut(s)	271
BtsI	GCAGTG	1 cut(s)	241
BtsIMutI	CAGTG	1 cut(s)	241
CaiI	CAGNNNCTG	1 cut(s)	226
CfoI	GCGC	1 cut(s)	130
Cfr13I	GGNCC	2 cut(s)	57, 180
CseI	GACGC	2 cut(s)	134, 149
Csp6I	GTAC	1 cut(s)	40
CspCI	CAANNNNNGTGG	2 cut(s)	146, 181
CviAII	CATG	1 cut(s)	26
CviJI	RGCY	5 cut(s)	92, 98, 106, 111, 248
CviKI_1	RGCY	5 cut(s)	92, 98, 106, 111, 248
CviQI	GTAC	1 cut(s)	40
DdeI	CTNAG	1 cut(s)	101
DpnI	GATC	3 cut(s)	86, 146, 240
DpnII	GATC	3 cut(s)	84, 144, 238
Eam1104I	CTCTTC	1 cut(s)	224
EarI	CTCTTC	1 cut(s)	224
Eco47I	GGWCC	2 cut(s)	57, 180
Eco57I	CTGAAG	2 cut(s)	154, 248
Eco91I	GGTNACC	1 cut(s)	115
EcoO109I	RGGNCCY	1 cut(s)	57
EcoO65I	GGTNACC	1 cut(s)	115
EcoRII	CCWGG	1 cut(s)	159
Esp3I	CGTCTC	1 cut(s)	117
FaeI	CATG	1 cut(s)	29
FaiI	YATR	1 cut(s)	27
FatI	CATG	1 cut(s)	25
FbaI	TGATCA	1 cut(s)	238
FokI	GGATG	1 cut(s)	278
GlaI	GCGC	1 cut(s)	129
GsaI	CCCAGC	1 cut(s)	110
HaeIII	GGCC	1 cut(s)	92
HgaI	GACGC	2 cut(s)	134, 149
HhaI	GCGC	1 cut(s)	130
Hin1II	CATG	1 cut(s)	29
Hin6I	GCGC	1 cut(s)	128
HinP1I	GCGC	1 cut(s)	128
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HindIII	AAGCTT	1 cut(s)	246
HinfI	GANTC	1 cut(s)	293
HphI	GGTGA	2 cut(s)	22, 109
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188I	TCNGA	3 cut(s)	102, 184, 228
Hpy188III	TCNNGA	1 cut(s)	242
Hpy8I	GTNNAC	1 cut(s)	202
HpyCH4V	TGCA	1 cut(s)	66
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 72
HpyF3I	CTNAG	1 cut(s)	101
Hsp92II	CATG	1 cut(s)	29
HspAI	GCGC	1 cut(s)	128
Ksp22I	TGATCA	1 cut(s)	238
Kzo9I	GATC	3 cut(s)	84, 144, 238
LguI	GCTCTTC	1 cut(s)	224
LpnPI	CCDG	6 cut(s)	40, 92, 133, 146, 173, 227
MaeIII	GTNAC	2 cut(s)	28, 115
MalI	GATC	3 cut(s)	86, 146, 240
MboI	GATC	3 cut(s)	84, 144, 238
MboII	GAAGA	6 cut(s)	3, 6, 9, 241, 265, 356
MhlI	GDGCHC	1 cut(s)	77
MluCI	AATT	2 cut(s)	256, 269
MmeI	TCCRAC	1 cut(s)	75
MnlI	CCTC	5 cut(s)	70, 82, 96, 280, 283
MseI	TTAA	1 cut(s)	210
MspR9I	CCNGG	1 cut(s)	161
MvaI	CCWGG	1 cut(s)	161
MvnI	CGCG	3 cut(s)	128, 130, 143
MwoI	GCNNNNNNNGC	2 cut(s)	41, 72
NdeII	GATC	3 cut(s)	84, 144, 238
NlaIII	CATG	1 cut(s)	29
NlaIV	GGNNCC	2 cut(s)	155, 181
NmeAIII	GCCGAG	1 cut(s)	61
NmuCI	GTSAC	2 cut(s)	28, 115
PciSI	GCTCTTC	1 cut(s)	224
PfeI	GAWTC	1 cut(s)	293
PpuMI	RGGWCCY	1 cut(s)	57
PshAI	GACNNNNGTC	1 cut(s)	26
Psp5II	RGGWCCY	1 cut(s)	57
Psp6I	CCWGG	1 cut(s)	159
PspEI	GGTNACC	1 cut(s)	115
PspFI	CCCAGC	1 cut(s)	106
PspGI	CCWGG	1 cut(s)	159
PspN4I	GGNNCC	2 cut(s)	155, 181
PspPI	GGNCC	2 cut(s)	57, 180
PspPPI	RGGWCCY	1 cut(s)	57
PstNI	CAGNNNCTG	1 cut(s)	226
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
SapI	GCTCTTC	1 cut(s)	224
SaqAI	TTAA	1 cut(s)	210
Sau3AI	GATC	3 cut(s)	84, 144, 238
Sau96I	GGNCC	2 cut(s)	57, 180
ScrFI	CCNGG	1 cut(s)	161
SduI	GDGCHC	1 cut(s)	77
SetI	ASST	6 cut(s)	59, 100, 162, 250, 313, 330
SinI	GGWCC	2 cut(s)	57, 180
Sse9I	AATT	2 cut(s)	256, 269
SsiI	CCGC	1 cut(s)	33
StyD4I	CCNGG	1 cut(s)	159
TaqI	TCGA	3 cut(s)	20, 77, 87
TasI	AATT	2 cut(s)	256, 269
TfiI	GAWTC	1 cut(s)	293
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TscAI	CASTG	1 cut(s)	241
TseFI	GTSAC	2 cut(s)	28, 115
Tsp45I	GTSAC	2 cut(s)	28, 115
TspDTI	ATGAA	4 cut(s)	282, 357, 363, 369
TspRI	CASTG	1 cut(s)	241
VpaK11BI	GGWCC	2 cut(s)	57, 180
XapI	RAATTY	2 cut(s)	256, 269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.