Rmu_co8379571.1_g000001

Polynucleotide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8379571.1
OG0005030
Physical Location & Seq
Forward (+)
1 .. 949
949 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8379571.1_g000001.1.cds

Sequence Viewer

Length: 423 bp
gattcttcttcgtcccatgtcgaagccgagtacgccaagtccagcaagtcctcgtgcaacaagtgctcgaaacctatcgagaagaaagctctgaggctgggcaccaaagacgcgcgtggttataccaagtggcaccacttgggttgcttcagttttgggtccgacccggttgtttcggttgacaagatcaaaggatttcagtctctggagagtagtgatcaggaagctttgaggaatttggtggatgaatttgagaaatctaaagaggattcaaatggtaagagaagttctcaaaaacgaaaggttcttgaattagatgaagatgaagatgaagatgaagatgaagaggaagatgaagatgaagatgaagatgaagatgaatatgaagtaggggaaagggagttaaagaaagcgaaggtatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0006979 GO:0008150 GO:0008152 GO:0009117 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010638 GO:0010835 GO:0010836 GO:0016301 GO:0016310 GO:0016311 GO:0016740 GO:0016772 GO:0016773 GO:0016787 GO:0016788 GO:0016791 GO:0019205 GO:0019219 GO:0019222 GO:0019637 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031400 GO:0031974 GO:0031981 GO:0032204 GO:0032206 GO:0032210 GO:0032212 GO:0032268 GO:0032269 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0042578 GO:0042769 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045935 GO:0046403 GO:0046404 GO:0046483 GO:0046939 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051338 GO:0051347 GO:0051606 GO:0051716 GO:0051731 GO:0051733 GO:0051734 GO:0051972 GO:0051973 GO:0055086 GO:0060255 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0098501 GO:0098502 GO:0098503 GO:0098504 GO:0098506 GO:0098518 GO:1901360 GO:1901363 GO:1904353 GO:1904355 GO:1904356 GO:1904358 GO:2000112 GO:2000278 GO:2000573 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNK3P zf-PARP

Protein Analysis

140

Amino Acids

15.94

Weight (kDa)

4.58

Isoelectric Point (pI)

58.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 101, 132
AccII CGCG 2 cut(s) 113, 115
AcsI RAATTY 2 cut(s) 235, 248
AcuI CTGAAG 1 cut(s) 133
AfaI GTAC 1 cut(s) 32
AgsI TTSAA 2 cut(s) 273, 311
AluBI AGCT 2 cut(s) 89, 227
AluI AGCT 2 cut(s) 89, 227
Alw21I GWGCWC 1 cut(s) 68
Alw26I GTCTC 1 cut(s) 207
AlwNI CAGNNNCTG 1 cut(s) 205
ApoI RAATTY 2 cut(s) 235, 248
AspLEI GCGC 1 cut(s) 115
AspS9I GGNCC 1 cut(s) 159
AsuC2I CCSGG 1 cut(s) 167
AvaII GGWCC 1 cut(s) 159
BaeGI GKGCMC 1 cut(s) 104
BanI GGYRCC 2 cut(s) 101, 132
BauI CACGAG 1 cut(s) 52
Bbv12I GWGCWC 1 cut(s) 68
BclI TGATCA 1 cut(s) 217
BcnI CCSGG 1 cut(s) 167
BcoDI GTCTC 1 cut(s) 207
Bme1390I CCNGG 1 cut(s) 167
Bme18I GGWCC 1 cut(s) 159
BmgT120I GGNCC 1 cut(s) 159
BmiI GGNNCC 3 cut(s) 103, 134, 160
BmrFI CCNGG 1 cut(s) 167
BplI GAGNNNNNCTC 2 cut(s) 274, 306
BpmI CTGGAG 1 cut(s) 227
BpuMI CCSGG 1 cut(s) 167
BseGI GGATG 1 cut(s) 250
BseMII CTCAG 1 cut(s) 83
BseSI GKGCMC 1 cut(s) 104
BseYI CCCAGC 1 cut(s) 97
Bsh1236I CGCG 2 cut(s) 113, 115
BshNI GGYRCC 2 cut(s) 101, 132
BsiHKAI GWGCWC 1 cut(s) 68
BsiSI CCGG 1 cut(s) 167
BsmAI GTCTC 1 cut(s) 207
Bsp1286I GDGCHC 2 cut(s) 68, 104
Bsp143I GATC 2 cut(s) 186, 217
BspCNI CTCAG 1 cut(s) 84
BspFNI CGCG 2 cut(s) 113, 115
BspLI GGNNCC 3 cut(s) 103, 134, 160
BspT107I GGYRCC 2 cut(s) 101, 132
BssMI GATC 2 cut(s) 186, 217
BssSI CACGAG 1 cut(s) 52
Bst2BI CACGAG 1 cut(s) 52
Bst6I CTCTTC 1 cut(s) 339
BstAPI GCANNNNNTGC 1 cut(s) 63
BstDEI CTNAG 1 cut(s) 92
BstF5I GGATG 1 cut(s) 250
BstFNI CGCG 2 cut(s) 113, 115
BstHHI GCGC 1 cut(s) 115
BstKTI GATC 2 cut(s) 189, 220
BstMAI GTCTC 1 cut(s) 207
BstMBI GATC 2 cut(s) 186, 217
BstMWI GCNNNNNNNGC 2 cut(s) 32, 63
BstSCI CCNGG 1 cut(s) 165
BstSLI GKGCMC 1 cut(s) 104
BstUI CGCG 2 cut(s) 113, 115
BtsCI GGATG 1 cut(s) 250
CaiI CAGNNNCTG 1 cut(s) 205
CfoI GCGC 1 cut(s) 115
Cfr13I GGNCC 1 cut(s) 159
CseI GACGC 1 cut(s) 119
Csp6I GTAC 1 cut(s) 31
CspCI CAANNNNNGTGG 2 cut(s) 125, 160
CviAII CATG 1 cut(s) 17
CviJI RGCY 4 cut(s) 26, 89, 97, 227
CviKI_1 RGCY 4 cut(s) 26, 89, 97, 227
CviQI GTAC 1 cut(s) 31
DdeI CTNAG 1 cut(s) 92
DpnI GATC 2 cut(s) 188, 219
DpnII GATC 2 cut(s) 186, 217
Eam1104I CTCTTC 1 cut(s) 339
EarI CTCTTC 1 cut(s) 339
Eco47I GGWCC 1 cut(s) 159
Eco57I CTGAAG 1 cut(s) 133
FaeI CATG 1 cut(s) 20
FaiI YATR 4 cut(s) 18, 123, 384, 421
FatI CATG 1 cut(s) 16
FbaI TGATCA 1 cut(s) 217
FokI GGATG 1 cut(s) 257
GlaI GCGC 1 cut(s) 114
GsaI CCCAGC 1 cut(s) 101
GsuI CTGGAG 1 cut(s) 227
HapII CCGG 1 cut(s) 167
HgaI GACGC 1 cut(s) 119
HhaI GCGC 1 cut(s) 115
Hin1II CATG 1 cut(s) 20
Hin6I GCGC 1 cut(s) 113
HinP1I GCGC 1 cut(s) 113
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HindIII AAGCTT 1 cut(s) 225
HinfI GANTC 2 cut(s) 2, 269
HpaII CCGG 1 cut(s) 167
Hpy166II GTNNAC 1 cut(s) 181
Hpy188I TCNGA 2 cut(s) 93, 163
Hpy188III TCNNGA 4 cut(s) 79, 206, 221, 308
Hpy8I GTNNAC 1 cut(s) 181
HpyAV CCTTC 1 cut(s) 409
HpyCH4V TGCA 1 cut(s) 57
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 63
HpyF3I CTNAG 1 cut(s) 92
Hsp92II CATG 1 cut(s) 20
HspAI GCGC 1 cut(s) 113
Ksp22I TGATCA 1 cut(s) 217
Kzo9I GATC 2 cut(s) 186, 217
LpnPI CCDG 5 cut(s) 55, 83, 180, 191, 206
MalI GATC 2 cut(s) 188, 219
MboI GATC 2 cut(s) 186, 217
MhlI GDGCHC 2 cut(s) 68, 104
MluCI AATT 3 cut(s) 235, 248, 311
MmeI TCCRAC 1 cut(s) 186
MnlI CCTC 5 cut(s) 61, 87, 225, 259, 340
MseI TTAA 1 cut(s) 404
MspI CCGG 1 cut(s) 167
MspR9I CCNGG 1 cut(s) 167
MvnI CGCG 2 cut(s) 113, 115
MwoI GCNNNNNNNGC 2 cut(s) 32, 63
NciI CCSGG 1 cut(s) 167
NdeII GATC 2 cut(s) 186, 217
NlaIII CATG 1 cut(s) 20
NlaIV GGNNCC 3 cut(s) 103, 134, 160
NmeAIII GCCGAG 1 cut(s) 52
PfeI GAWTC 2 cut(s) 2, 269
PspFI CCCAGC 1 cut(s) 97
PspN4I GGNNCC 3 cut(s) 103, 134, 160
PspPI GGNCC 1 cut(s) 159
PsrI GAACNNNNNNTAC 2 cut(s) 271, 303
PstNI CAGNNNCTG 1 cut(s) 205
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
SaqAI TTAA 1 cut(s) 404
Sau3AI GATC 2 cut(s) 186, 217
Sau96I GGNCC 1 cut(s) 159
ScrFI CCNGG 1 cut(s) 167
SduI GDGCHC 2 cut(s) 68, 104
SetI ASST 5 cut(s) 76, 91, 229, 306, 420
SinI GGWCC 1 cut(s) 159
Sse9I AATT 3 cut(s) 235, 248, 311
StyD4I CCNGG 1 cut(s) 165
TaqI TCGA 3 cut(s) 21, 68, 78
TasI AATT 3 cut(s) 235, 248, 311
TfiI GAWTC 2 cut(s) 2, 269
Tru1I TTAA 1 cut(s) 404
Tru9I TTAA 1 cut(s) 404
VpaK11BI GGWCC 1 cut(s) 159
XapI RAATTY 2 cut(s) 235, 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.