Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0005030

Physical Location & Seq

Genomic Coordinates Forward (+)

86358999 .. 86361359

Gene Structure 2361 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG510900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGAATTCTTTTAGTTCTTATCATCAACTTGATCATTCTGTATTTCACTTGCAGGTATCTAACCTGGAAATATCCTTTTCAGTGTCTGATGTGAAGGACAAGTACAAGGTTTTCATAGCTTGTGGGACGAGTCAAGGAGAAGACCCCTTTCGCAAACCCAAACCGGGGTTGTGGCATATGTTGGAACAACACTTCAACTCTGGCATTTCCATTGATATGAAACAGTTATTGAACTCCTTTTTTTTTTTTTCCTGGGATTACACATCACTAGTTTTCACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0006979 GO:0008150 GO:0008152 GO:0009117 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010638 GO:0010835 GO:0010836 GO:0016301 GO:0016310 GO:0016311 GO:0016740 GO:0016772 GO:0016773 GO:0016787 GO:0016788 GO:0016791 GO:0019205 GO:0019219 GO:0019222 GO:0019637 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031400 GO:0031974 GO:0031981 GO:0032204 GO:0032206 GO:0032210 GO:0032212 GO:0032268 GO:0032269 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0042578 GO:0042769 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045935 GO:0046403 GO:0046404 GO:0046483 GO:0046939 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051338 GO:0051347 GO:0051606 GO:0051716 GO:0051731 GO:0051733 GO:0051734 GO:0051972 GO:0051973 GO:0055086 GO:0060255 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0098501 GO:0098502 GO:0098503 GO:0098504 GO:0098506 GO:0098518 GO:1901360 GO:1901363 GO:1904353 GO:1904355 GO:1904356 GO:1904358 GO:2000112 GO:2000278 GO:2000573 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PNK3P zf-PARP

Protein Analysis

93

Amino Acids

10.85

Weight (kDa)

6.15

Isoelectric Point (pI)

30.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PNK3P	PF08645	28 - 76	2.6e-06	Polynucleotide kinase 3 phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14890 AT3G14890
fragaria_vesca	FvH4_3g18270 FvH4_3g18270 FvH4_3g18270 FvH4_3g18270 FvH4_3g18270 FvH4_3g18270
malus_domestica	MD11G1263900.v1.1
prunus_persica	Prupe.4G164600_v2.0.a1
pyrus_communis	pycom11g23240
rosa_chinensis	RchiOBHm_Chr1g0352751 RchiOBHm_Chr5g0030901
rosa_laevigata	RLG00000033264
rosa_multiflora	Rmu_co8379571.1_g000001 Rmu_co8381907.1_g000001 Rmu_sc0001974.1_g000024 Rmu_sc0007903.1_g000004
rosa_roxburghii	Rroxscaffold_1G00049370
rosa_rugosa	Rorug05G0121400
rosa_samantha	Rh2AG245900 Rh2DG254200 Rh5AG214500 Rh5AG510900 Rh5BG213500 Rh5CG237400 Rh5DG218000
rosa_wichuraiana	Rw1G007780 Rw4G027950 Rw5G019610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	43
AcsI	RAATTY	1 cut(s)	4
AfaI	GTAC	1 cut(s)	104
AfiI	CCNNNNNNNGG	2 cut(s)	164, 165
AgsI	TTSAA	2 cut(s)	196, 232
AhlI	ACTAGT	1 cut(s)	268
AjnI	CCWGG	2 cut(s)	63, 251
AluBI	AGCT	1 cut(s)	119
AluI	AGCT	1 cut(s)	119
AlwNI	CAGNNNCTG	1 cut(s)	86
ApoI	RAATTY	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	165
BarI	GAAGNNNNNNTAC	2 cut(s)	86, 118
BbsI	GAAGAC	1 cut(s)	147
BciT130I	CCWGG	2 cut(s)	65, 253
BclI	TGATCA	1 cut(s)	31
BcnI	CCSGG	1 cut(s)	165
BcuI	ACTAGT	1 cut(s)	268
BfaI	CTAG	1 cut(s)	269
BfuAI	ACCTGC	1 cut(s)	43
Bme1390I	CCNGG	3 cut(s)	65, 165, 253
BmrFI	CCNGG	3 cut(s)	65, 165, 253
BpiI	GAAGAC	1 cut(s)	147
BpuMI	CCSGG	1 cut(s)	165
BsaJI	CCNNGG	2 cut(s)	164, 252
Bsc4I	CCNNNNNNNGG	2 cut(s)	164, 165
BseBI	CCWGG	2 cut(s)	65, 253
BseDI	CCNNGG	2 cut(s)	164, 252
BseLI	CCNNNNNNNGG	2 cut(s)	164, 165
BsiSI	CCGG	1 cut(s)	164
BslFI	GGGAC	1 cut(s)	139
BslI	CCNNNNNNNGG	2 cut(s)	164, 165
BsmFI	GGGAC	1 cut(s)	139
Bsp143I	GATC	1 cut(s)	31
BspMI	ACCTGC	1 cut(s)	43
BssECI	CCNNGG	2 cut(s)	164, 252
BssMI	GATC	1 cut(s)	31
Bst2UI	CCWGG	2 cut(s)	65, 253
Bst4CI	ACNGT	1 cut(s)	225
BstKTI	GATC	1 cut(s)	34
BstMBI	GATC	1 cut(s)	31
BstNI	CCWGG	2 cut(s)	65, 253
BstSCI	CCNGG	3 cut(s)	63, 163, 251
BstV2I	GAAGAC	1 cut(s)	147
BtsIMutI	CAGTG	1 cut(s)	87
BveI	ACCTGC	1 cut(s)	43
CaiI	CAGNNNCTG	1 cut(s)	86
Csp6I	GTAC	1 cut(s)	103
CviJI	RGCY	1 cut(s)	119
CviKI_1	RGCY	1 cut(s)	119
CviQI	GTAC	1 cut(s)	103
DpnI	GATC	1 cut(s)	33
DpnII	GATC	1 cut(s)	31
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	2 cut(s)	63, 251
FaiI	YATR	5 cut(s)	116, 177, 179, 218, 280
FaqI	GGGAC	1 cut(s)	139
FauNDI	CATATG	1 cut(s)	177
FbaI	TGATCA	1 cut(s)	31
FspBI	CTAG	1 cut(s)	269
HapII	CCGG	1 cut(s)	164
HinfI	GANTC	1 cut(s)	130
HpaII	CCGG	1 cut(s)	164
Hpy188I	TCNGA	1 cut(s)	88
HpyAV	CCTTC	1 cut(s)	88
HpyCH4III	ACNGT	1 cut(s)	225
HpyCH4V	TGCA	1 cut(s)	52
Ksp22I	TGATCA	1 cut(s)	31
Kzo9I	GATC	1 cut(s)	31
LpnPI	CCDG	7 cut(s)	38, 50, 77, 177, 186, 238, 265
MaeI	CTAG	1 cut(s)	269
MalI	GATC	1 cut(s)	33
MboI	GATC	1 cut(s)	31
MboII	GAAGA	1 cut(s)	152
MluCI	AATT	1 cut(s)	4
MlyI	GAGTC	1 cut(s)	139
MmeI	TCCRAC	1 cut(s)	162
MslI	CAYNNNNRTG	1 cut(s)	215
MspI	CCGG	1 cut(s)	164
MspR9I	CCNGG	3 cut(s)	65, 165, 253
MvaI	CCWGG	2 cut(s)	65, 253
NciI	CCSGG	1 cut(s)	165
NdeI	CATATG	1 cut(s)	177
NdeII	GATC	1 cut(s)	31
PleI	GAGTC	1 cut(s)	138
PpsI	GAGTC	1 cut(s)	138
Psp6I	CCWGG	2 cut(s)	63, 251
PspGI	CCWGG	2 cut(s)	63, 251
PstNI	CAGNNNCTG	1 cut(s)	86
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
RseI	CAYNNNNRTG	1 cut(s)	215
Sau3AI	GATC	1 cut(s)	31
SchI	GAGTC	1 cut(s)	139
ScrFI	CCNGG	3 cut(s)	65, 165, 253
SetI	ASST	4 cut(s)	57, 66, 111, 121
SmiMI	CAYNNNNRTG	1 cut(s)	215
SpeI	ACTAGT	1 cut(s)	268
Sse9I	AATT	1 cut(s)	4
SspMI	CTAG	1 cut(s)	269
StyD4I	CCNGG	3 cut(s)	63, 163, 251
TaaI	ACNGT	1 cut(s)	225
TasI	AATT	1 cut(s)	4
TatI	WGTACW	1 cut(s)	102
TscAI	CASTG	1 cut(s)	87
TspDTI	ATGAA	3 cut(s)	17, 103, 233
TspRI	CASTG	1 cut(s)	87
XapI	RAATTY	1 cut(s)	4
XspI	CTAG	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.