Rw1G007780

Polynucleotide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0005030
Physical Location & Seq
Reverse (-)
16577589 .. 16578272
684 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G007780.1

Sequence Viewer

Length: 450 bp
ATGAGTTATGACCAACATTCTTTCTGTGTATCTTTTGTTGCAGACTTGGACTCGTTAAGACTTGTTAAACAAGCTTTTAGTATGAATTCTTTTAGTTCTTATCATCAACTTGATCATTCTGTATTTTACTTGCAGGTATCTAACCTGGAAATATCCTTTTCAGTGTCTGATGTGAAGGACAAGTTCAAGGTTTTCATAGCTTGTGGGACGAGTCAAGGAGAAGACCCCTTTCGCAAACCCAAACTGGGGTTGTGGCATATGTTGGAACAACACTTCAACTCTGGCATTTCCATTGATATGAAACAGTTATTGAACTCCTATTTTTATTTTTTTCCTGGGATTACACATCAGTACTTTTCACATAGATTCATTAGAAATGCTACCTTACTAAGTTTAGTTTGTTTGTCTTCTTCTTCTTTTTTCTTTTTCTCTATTGCATTTGTTATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0006979 GO:0008150 GO:0008152 GO:0009117 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010638 GO:0010835 GO:0010836 GO:0016301 GO:0016310 GO:0016311 GO:0016740 GO:0016772 GO:0016773 GO:0016787 GO:0016788 GO:0016791 GO:0019205 GO:0019219 GO:0019222 GO:0019637 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031400 GO:0031974 GO:0031981 GO:0032204 GO:0032206 GO:0032210 GO:0032212 GO:0032268 GO:0032269 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0042578 GO:0042769 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045935 GO:0046403 GO:0046404 GO:0046483 GO:0046939 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051338 GO:0051347 GO:0051606 GO:0051716 GO:0051731 GO:0051733 GO:0051734 GO:0051972 GO:0051973 GO:0055086 GO:0060255 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0098501 GO:0098502 GO:0098503 GO:0098504 GO:0098506 GO:0098518 GO:1901360 GO:1901363 GO:1904353 GO:1904355 GO:1904356 GO:1904358 GO:2000112 GO:2000278 GO:2000573 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNK3P zf-PARP

Protein Analysis

149

Amino Acids

17.27

Weight (kDa)

7.04

Isoelectric Point (pI)

40.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PNK3P PF08645 51 - 103 2.6e-06 Polynucleotide kinase 3 phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 124
AcsI RAATTY 1 cut(s) 85
AfaI GTAC 1 cut(s) 353
AfiI CCNNNNNNNGG 2 cut(s) 245, 246
AgsI TTSAA 3 cut(s) 187, 277, 313
AjnI CCWGG 2 cut(s) 144, 334
AluBI AGCT 2 cut(s) 74, 200
AluI AGCT 2 cut(s) 74, 200
AlwNI CAGNNNCTG 1 cut(s) 167
ApoI RAATTY 1 cut(s) 85
BbsI GAAGAC 2 cut(s) 228, 399
BciT130I CCWGG 2 cut(s) 146, 336
BclI TGATCA 1 cut(s) 112
BfuAI ACCTGC 1 cut(s) 124
BmcAI AGTACT 1 cut(s) 353
Bme1390I CCNGG 2 cut(s) 146, 336
BmrFI CCNGG 2 cut(s) 146, 336
BmrI ACTGGG 1 cut(s) 254
BmuI ACTGGG 1 cut(s) 254
BpiI GAAGAC 2 cut(s) 228, 399
BsaJI CCNNGG 1 cut(s) 335
Bsc4I CCNNNNNNNGG 2 cut(s) 245, 246
Bse1I ACTGG 1 cut(s) 249
BseBI CCWGG 2 cut(s) 146, 336
BseDI CCNNGG 1 cut(s) 335
BseLI CCNNNNNNNGG 2 cut(s) 245, 246
BseNI ACTGG 1 cut(s) 249
BslFI GGGAC 1 cut(s) 220
BslI CCNNNNNNNGG 2 cut(s) 245, 246
BsmFI GGGAC 1 cut(s) 220
Bsp143I GATC 1 cut(s) 112
BspMI ACCTGC 1 cut(s) 124
BsrI ACTGG 1 cut(s) 249
BssECI CCNNGG 1 cut(s) 335
BssMI GATC 1 cut(s) 112
Bst2UI CCWGG 2 cut(s) 146, 336
Bst4CI ACNGT 1 cut(s) 306
BstDEI CTNAG 1 cut(s) 389
BstKTI GATC 1 cut(s) 115
BstMBI GATC 1 cut(s) 112
BstNI CCWGG 2 cut(s) 146, 336
BstSCI CCNGG 2 cut(s) 144, 334
BstV2I GAAGAC 2 cut(s) 228, 399
BtsIMutI CAGTG 1 cut(s) 168
BveI ACCTGC 1 cut(s) 124
CaiI CAGNNNCTG 1 cut(s) 167
Csp6I GTAC 1 cut(s) 352
CviJI RGCY 2 cut(s) 74, 200
CviKI_1 RGCY 2 cut(s) 74, 200
CviQI GTAC 1 cut(s) 352
DdeI CTNAG 1 cut(s) 389
DpnI GATC 1 cut(s) 114
DpnII GATC 1 cut(s) 112
EcoRI GAATTC 1 cut(s) 85
EcoRII CCWGG 2 cut(s) 144, 334
FaiI YATR 7 cut(s) 9, 83, 197, 258, 260, 299, 363
FaqI GGGAC 1 cut(s) 220
FauNDI CATATG 1 cut(s) 258
FbaI TGATCA 1 cut(s) 112
HindIII AAGCTT 1 cut(s) 72
HinfI GANTC 3 cut(s) 50, 211, 366
Hpy188I TCNGA 1 cut(s) 169
HpyAV CCTTC 1 cut(s) 169
HpyCH4III ACNGT 1 cut(s) 306
HpyCH4V TGCA 3 cut(s) 41, 133, 437
HpyF3I CTNAG 1 cut(s) 389
Ksp22I TGATCA 1 cut(s) 112
Kzo9I GATC 1 cut(s) 112
LpnPI CCDG 7 cut(s) 119, 131, 158, 230, 267, 321, 348
MalI GATC 1 cut(s) 114
MboI GATC 1 cut(s) 112
MboII GAAGA 4 cut(s) 233, 399, 402, 405
MluCI AATT 1 cut(s) 85
MlyI GAGTC 2 cut(s) 44, 220
MmeI TCCRAC 1 cut(s) 243
MseI TTAA 3 cut(s) 56, 66, 448
MslI CAYNNNNRTG 1 cut(s) 296
MspR9I CCNGG 2 cut(s) 146, 336
MvaI CCWGG 2 cut(s) 146, 336
NdeI CATATG 1 cut(s) 258
NdeII GATC 1 cut(s) 112
PfeI GAWTC 1 cut(s) 366
PleI GAGTC 2 cut(s) 44, 219
PpsI GAGTC 2 cut(s) 44, 219
Psp6I CCWGG 2 cut(s) 144, 334
PspGI CCWGG 2 cut(s) 144, 334
PstNI CAGNNNCTG 1 cut(s) 167
RsaI GTAC 1 cut(s) 353
RsaNI GTAC 1 cut(s) 352
RseI CAYNNNNRTG 1 cut(s) 296
SaqAI TTAA 3 cut(s) 56, 66, 448
Sau3AI GATC 1 cut(s) 112
ScaI AGTACT 1 cut(s) 353
SchI GAGTC 2 cut(s) 44, 220
ScrFI CCNGG 2 cut(s) 146, 336
SetI ASST 6 cut(s) 76, 138, 147, 192, 202, 386
SmiMI CAYNNNNRTG 1 cut(s) 296
Sse9I AATT 1 cut(s) 85
StyD4I CCNGG 2 cut(s) 144, 334
TaaI ACNGT 1 cut(s) 306
TasI AATT 1 cut(s) 85
TatI WGTACW 1 cut(s) 351
TfiI GAWTC 1 cut(s) 366
Tru1I TTAA 3 cut(s) 56, 66, 448
Tru9I TTAA 3 cut(s) 56, 66, 448
TscAI CASTG 1 cut(s) 168
TspDTI ATGAA 4 cut(s) 98, 184, 314, 358
TspRI CASTG 1 cut(s) 168
XapI RAATTY 1 cut(s) 85
ZrmI AGTACT 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.