Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007903.1

Orthogroup ID

OG0005030

Physical Location & Seq

Genomic Coordinates Forward (+)

22895 .. 25860

Gene Structure 2966 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007903.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

atgagtgtcgcaatcgaggagagaggggcttggtcttgctcttggcctcggcgtattggttccagtatttcgcgacggtggggacgggatcaggaactgctcgtagatctgcgccgcctccgagatcggcaaactgcgggcctgaatggcgtggtggctgaccattgtatttgggattatggtgaggtatctaacctagaaatatccttttcagtgtctaatgtgaaggacaattacaaggttttcatagcttgtgggacgagtcaaggagaagacccctttcgcaaacccaaaccggggttgtggcatatgttggaacaaaacttcaactctggcatttccattgatatgaaacaatctttttattttggtgatgctgctggaagaagcaatgatcacagtgatgctgtcttaagtttgcagaggccaatggtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0006979 GO:0008150 GO:0008152 GO:0009117 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010638 GO:0010835 GO:0010836 GO:0016301 GO:0016310 GO:0016311 GO:0016740 GO:0016772 GO:0016773 GO:0016787 GO:0016788 GO:0016791 GO:0019205 GO:0019219 GO:0019222 GO:0019637 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031400 GO:0031974 GO:0031981 GO:0032204 GO:0032206 GO:0032210 GO:0032212 GO:0032268 GO:0032269 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0042578 GO:0042769 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045935 GO:0046403 GO:0046404 GO:0046483 GO:0046939 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051338 GO:0051347 GO:0051606 GO:0051716 GO:0051731 GO:0051733 GO:0051734 GO:0051972 GO:0051973 GO:0055086 GO:0060255 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0098501 GO:0098502 GO:0098503 GO:0098504 GO:0098506 GO:0098518 GO:1901360 GO:1901363 GO:1904353 GO:1904355 GO:1904356 GO:1904358 GO:2000112 GO:2000278 GO:2000573 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PNK3P zf-PARP

Protein Analysis

145

Amino Acids

16.43

Weight (kDa)

6.82

Isoelectric Point (pI)

58.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14890 AT3G14890
fragaria_vesca	FvH4_3g18270 FvH4_3g18270 FvH4_3g18270 FvH4_3g18270 FvH4_3g18270 FvH4_3g18270
malus_domestica	MD11G1263900.v1.1
prunus_persica	Prupe.4G164600_v2.0.a1
pyrus_communis	pycom11g23240
rosa_chinensis	RchiOBHm_Chr1g0352751 RchiOBHm_Chr5g0030901
rosa_laevigata	RLG00000033264
rosa_multiflora	Rmu_co8379571.1_g000001 Rmu_co8381907.1_g000001 Rmu_sc0001974.1_g000024 Rmu_sc0007903.1_g000004
rosa_roxburghii	Rroxscaffold_1G00049370
rosa_rugosa	Rorug05G0121400
rosa_samantha	Rh2AG245900 Rh2DG254200 Rh5AG214500 Rh5AG510900 Rh5BG213500 Rh5CG237400 Rh5DG218000
rosa_wichuraiana	Rw1G007780 Rw4G027950 Rw5G019610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	73
AciI	CCGC	2 cut(s)	115, 137
AclWI	GGATC	1 cut(s)	96
AfiI	CCNNNNNNNGG	2 cut(s)	296, 297
AflII	CTTAAG	1 cut(s)	412
AgsI	TTSAA	1 cut(s)	328
AluBI	AGCT	1 cut(s)	251
AluI	AGCT	1 cut(s)	251
AlwI	GGATC	1 cut(s)	96
AlwNI	CAGNNNCTG	1 cut(s)	97
AoxI	GGCC	3 cut(s)	44, 139, 425
ApeKI	GCWGC	1 cut(s)	377
AspLEI	GCGC	1 cut(s)	114
AspS9I	GGNCC	1 cut(s)	139
AsuC2I	CCSGG	1 cut(s)	297
AsuHPI	GGTGA	2 cut(s)	194, 383
BarI	GAAGNNNNNNTAC	2 cut(s)	218, 250
BbsI	GAAGAC	1 cut(s)	279
BbvI	GCAGC	1 cut(s)	364
BclI	TGATCA	1 cut(s)	394
BcnI	CCSGG	1 cut(s)	297
BfaI	CTAG	1 cut(s)	197
BfrI	CTTAAG	1 cut(s)	412
BglI	GCCNNNNNGGC	1 cut(s)	147
BglII	AGATCT	1 cut(s)	106
BisI	GCNGC	2 cut(s)	115, 378
BlsI	GCNGC	2 cut(s)	116, 379
Bme1390I	CCNGG	1 cut(s)	297
BmgT120I	GGNCC	1 cut(s)	139
BmiI	GGNNCC	1 cut(s)	61
BmrFI	CCNGG	1 cut(s)	297
BmsI	GCATC	2 cut(s)	364, 394
BpiI	GAAGAC	1 cut(s)	279
BpuMI	CCSGG	1 cut(s)	297
BsaJI	CCNNGG	2 cut(s)	47, 296
Bsc4I	CCNNNNNNNGG	2 cut(s)	296, 297
Bse1I	ACTGG	1 cut(s)	63
Bse3DI	GCAATG	1 cut(s)	397
BseDI	CCNNGG	2 cut(s)	47, 296
BseLI	CCNNNNNNNGG	2 cut(s)	296, 297
BseMI	GCAATG	1 cut(s)	397
BseNI	ACTGG	1 cut(s)	63
BseRI	GAGGAG	1 cut(s)	32
BseXI	GCAGC	1 cut(s)	364
Bsh1236I	CGCG	1 cut(s)	73
BshFI	GGCC	3 cut(s)	46, 141, 427
BsiSI	CCGG	1 cut(s)	296
BslFI	GGGAC	2 cut(s)	96, 271
BslI	CCNNNNNNNGG	2 cut(s)	296, 297
BsmFI	GGGAC	2 cut(s)	96, 271
BsnI	GGCC	3 cut(s)	46, 141, 427
Bsp143I	GATC	4 cut(s)	88, 106, 124, 394
Bsp68I	TCGCGA	1 cut(s)	73
BspACI	CCGC	2 cut(s)	115, 137
BspANI	GGCC	3 cut(s)	46, 141, 427
BspFNI	CGCG	1 cut(s)	73
BspLI	GGNNCC	1 cut(s)	61
BspPI	GGATC	1 cut(s)	96
BspTI	CTTAAG	1 cut(s)	412
BsrDI	GCAATG	1 cut(s)	397
BsrI	ACTGG	1 cut(s)	63
BssECI	CCNNGG	2 cut(s)	47, 296
BssMI	GATC	4 cut(s)	88, 106, 124, 394
Bst4CI	ACNGT	2 cut(s)	78, 401
BstAFI	CTTAAG	1 cut(s)	412
BstC8I	GCNNGC	1 cut(s)	139
BstFNI	CGCG	1 cut(s)	73
BstHHI	GCGC	1 cut(s)	114
BstKTI	GATC	4 cut(s)	91, 109, 127, 397
BstMBI	GATC	4 cut(s)	88, 106, 124, 394
BstMWI	GCNNNNNNNGC	1 cut(s)	147
BstSCI	CCNGG	1 cut(s)	295
BstUI	CGCG	1 cut(s)	73
BstV1I	GCAGC	1 cut(s)	364
BstV2I	GAAGAC	1 cut(s)	279
BstX2I	RGATCY	1 cut(s)	106
BstYI	RGATCY	1 cut(s)	106
BsuRI	GGCC	3 cut(s)	46, 141, 427
BtsIMutI	CAGTG	2 cut(s)	219, 406
BtuMI	TCGCGA	1 cut(s)	73
Cac8I	GCNNGC	1 cut(s)	139
CaiI	CAGNNNCTG	1 cut(s)	97
CfoI	GCGC	1 cut(s)	114
Cfr13I	GGNCC	1 cut(s)	139
CviJI	RGCY	6 cut(s)	29, 46, 141, 158, 251, 427
CviKI_1	RGCY	6 cut(s)	29, 46, 141, 158, 251, 427
DpnI	GATC	4 cut(s)	90, 108, 126, 396
DpnII	GATC	4 cut(s)	88, 106, 124, 394
FaiI	YATR	5 cut(s)	180, 248, 309, 311, 350
FaqI	GGGAC	2 cut(s)	96, 271
FauI	CCCGC	1 cut(s)	130
FauNDI	CATATG	1 cut(s)	309
FbaI	TGATCA	1 cut(s)	394
Fnu4HI	GCNGC	2 cut(s)	115, 378
Fsp4HI	GCNGC	2 cut(s)	115, 378
FspBI	CTAG	1 cut(s)	197
GlaI	GCGC	1 cut(s)	113
GluI	GCNGC	2 cut(s)	115, 378
HaeIII	GGCC	3 cut(s)	46, 141, 427
HapII	CCGG	1 cut(s)	296
HhaI	GCGC	1 cut(s)	114
Hin6I	GCGC	1 cut(s)	112
HinP1I	GCGC	1 cut(s)	112
HinfI	GANTC	1 cut(s)	262
HpaII	CCGG	1 cut(s)	296
HphI	GGTGA	2 cut(s)	194, 383
Hpy188I	TCNGA	1 cut(s)	122
Hpy188III	TCNNGA	2 cut(s)	72, 92
Hpy99I	CGWCG	1 cut(s)	78
HpyAV	CCTTC	1 cut(s)	220
HpyCH4III	ACNGT	2 cut(s)	78, 401
HpyCH4V	TGCA	1 cut(s)	421
HpyF10VI	GCNNNNNNNGC	1 cut(s)	147
HspAI	GCGC	1 cut(s)	112
Ksp22I	TGATCA	1 cut(s)	394
Kzo9I	GATC	4 cut(s)	88, 106, 124, 394
LpnPI	CCDG	6 cut(s)	76, 77, 155, 309, 318, 366
Lsp1109I	GCAGC	1 cut(s)	364
LweI	GCATC	2 cut(s)	364, 394
MaeI	CTAG	1 cut(s)	197
MalI	GATC	4 cut(s)	90, 108, 126, 396
MboI	GATC	4 cut(s)	88, 106, 124, 394
MboII	GAAGA	2 cut(s)	284, 396
MflI	RGATCY	1 cut(s)	106
MluCI	AATT	1 cut(s)	232
MlyI	GAGTC	1 cut(s)	271
MmeI	TCCRAC	1 cut(s)	294
MnlI	CCTC	6 cut(s)	10, 17, 57, 128, 178, 417
MseI	TTAA	1 cut(s)	413
MslI	CAYNNNNRTG	2 cut(s)	347, 402
MspCI	CTTAAG	1 cut(s)	412
MspI	CCGG	1 cut(s)	296
MspR9I	CCNGG	1 cut(s)	297
MvnI	CGCG	1 cut(s)	73
MwoI	GCNNNNNNNGC	1 cut(s)	147
NciI	CCSGG	1 cut(s)	297
NdeI	CATATG	1 cut(s)	309
NdeII	GATC	4 cut(s)	88, 106, 124, 394
NlaIV	GGNNCC	1 cut(s)	61
NmeAIII	GCCGAG	1 cut(s)	28
NruI	TCGCGA	1 cut(s)	73
PkrI	GCNGC	2 cut(s)	116, 379
PleI	GAGTC	1 cut(s)	270
PpsI	GAGTC	1 cut(s)	270
PspN4I	GGNNCC	1 cut(s)	61
PspPI	GGNCC	1 cut(s)	139
PstNI	CAGNNNCTG	1 cut(s)	97
PsuI	RGATCY	1 cut(s)	106
RruI	TCGCGA	1 cut(s)	73
RseI	CAYNNNNRTG	2 cut(s)	347, 402
SaqAI	TTAA	1 cut(s)	413
SatI	GCNGC	2 cut(s)	115, 378
Sau3AI	GATC	4 cut(s)	88, 106, 124, 394
Sau96I	GGNCC	1 cut(s)	139
SchI	GAGTC	1 cut(s)	271
ScrFI	CCNGG	1 cut(s)	297
SetI	ASST	4 cut(s)	189, 198, 243, 253
SfaNI	GCATC	2 cut(s)	364, 394
SmiMI	CAYNNNNRTG	2 cut(s)	347, 402
SmlI	CTYRAG	1 cut(s)	412
SmoI	CTYRAG	1 cut(s)	412
Sse9I	AATT	1 cut(s)	232
SsiI	CCGC	2 cut(s)	115, 137
SspMI	CTAG	1 cut(s)	197
StyD4I	CCNGG	1 cut(s)	295
TaaI	ACNGT	2 cut(s)	78, 401
TaqI	TCGA	1 cut(s)	15
TasI	AATT	1 cut(s)	232
TauI	GCSGC	1 cut(s)	117
Tru1I	TTAA	1 cut(s)	413
Tru9I	TTAA	1 cut(s)	413
TscAI	CASTG	2 cut(s)	219, 406
TseI	GCWGC	1 cut(s)	377
TspDTI	ATGAA	2 cut(s)	235, 365
TspRI	CASTG	2 cut(s)	219, 406
Vha464I	CTTAAG	1 cut(s)	412
XspI	CTAG	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.