Rmu_sc0001974.1_g000024

Polynucleotide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001974.1
OG0005030
Physical Location & Seq
Forward (+)
93240 .. 97454
4215 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001974.1_g000024.1.cds

Sequence Viewer

Length: 1008 bp
atgtcttcttcttcttcttcgacccatgtcaccgccgagtacgccaagtccaacaggtcctcttgcaagaagtgctcgaaaaagatcgaggccaaagctctgaggctgggcttggtcaccagagacgcgcgtgggtttgacgcgatcaagtggcaccacctgggttgcttcagttttgggtccgagttggttgcttcggttgacaagattaaagggtttcagtctctgaagagcagtgatcaggaagctttgaagaatttggtggatgaatttgagaaatccaaagaggaggattcaaatggaaagaaaggttctcaaaaacaaaaggtttgtgaagtagatgaagatgaaaatgaagtaggggaaagggatttgaagaaagcgaaggtatctaacctggaaatatccttttcagtgtctgatgtgaaggacaagtacaaggaagcaactcttccacctaaatggaaggcatttcagactatcatatttcttgaaagggatgatggtctgcatgattcaagtaaaattgctgcttttgattttgatggatgtcttgcaaatactgatgttaggagagtcggtgctgatgcttggtccctaatgtatccttctatacctgataaactacggagcttgtatgaggatggctacaagctggtaatcttcacgaatgaagccaacattgagcgctggaaaaataagagacaagtagctgtggactcaaaaattggacgtctcaacgattttattaaggaagtgaaggtcccaattcaggttttcatagcttgtggcacaagccaaggagaagacccctttcgcaaacccaaaccggggttgtggcatatgttggaacaacacttcaactctggcatttccattgatatgaatcaatctttttatgttggtgatgctgctggaagaagcaatgatcacagtgatgctgatattaagtttgcagaggccaatggtttaaagttttatgtcccagaggatttctttgaagcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0006979 GO:0008150 GO:0008152 GO:0009117 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010638 GO:0010835 GO:0010836 GO:0016301 GO:0016310 GO:0016311 GO:0016740 GO:0016772 GO:0016773 GO:0016787 GO:0016788 GO:0016791 GO:0019205 GO:0019219 GO:0019222 GO:0019637 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031400 GO:0031974 GO:0031981 GO:0032204 GO:0032206 GO:0032210 GO:0032212 GO:0032268 GO:0032269 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0042578 GO:0042769 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045935 GO:0046403 GO:0046404 GO:0046483 GO:0046939 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051338 GO:0051347 GO:0051606 GO:0051716 GO:0051731 GO:0051733 GO:0051734 GO:0051972 GO:0051973 GO:0055086 GO:0060255 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0098501 GO:0098502 GO:0098503 GO:0098504 GO:0098506 GO:0098518 GO:1901360 GO:1901363 GO:1904353 GO:1904355 GO:1904356 GO:1904358 GO:2000112 GO:2000278 GO:2000573 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNK3P zf-PARP

Protein Analysis

335

Amino Acids

37.65

Weight (kDa)

6.22

Isoelectric Point (pI)

41.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 736
AccB1I GGYRCC 1 cut(s) 153
AccII CGCG 3 cut(s) 128, 130, 143
AciI CCGC 1 cut(s) 33
AcsI RAATTY 2 cut(s) 256, 269
AcuI CTGAAG 2 cut(s) 154, 248
AcyI GRCGYC 1 cut(s) 733
AfaI GTAC 2 cut(s) 41, 437
AfeI AGCGCT 1 cut(s) 689
AfiI CCNNNNNNNGG 3 cut(s) 772, 830, 831
AgsI TTSAA 7 cut(s) 253, 297, 376, 494, 519, 862, 1001
AjnI CCWGG 2 cut(s) 159, 396
AluBI AGCT 7 cut(s) 98, 248, 633, 655, 713, 785, 1004
AluI AGCT 7 cut(s) 98, 248, 633, 655, 713, 785, 1004
Alw21I GWGCWC 1 cut(s) 77
Alw26I GTCTC 4 cut(s) 117, 228, 697, 740
AlwNI CAGNNNCTG 2 cut(s) 226, 419
Aor51HI AGCGCT 1 cut(s) 689
AoxI GGCC 2 cut(s) 90, 960
ApeKI GCWGC 2 cut(s) 530, 911
ApoI RAATTY 2 cut(s) 256, 269
AspLEI GCGC 2 cut(s) 130, 690
AspS9I GGNCC 4 cut(s) 57, 180, 594, 763
AsuC2I CCSGG 1 cut(s) 831
AsuHPI GGTGA 3 cut(s) 22, 109, 917
AvaII GGWCC 4 cut(s) 57, 180, 594, 763
BanI GGYRCC 1 cut(s) 153
BarI GAAGNNNNNNTAC 2 cut(s) 419, 451
BbsI GAAGAC 1 cut(s) 813
Bbv12I GWGCWC 1 cut(s) 77
BbvI GCAGC 2 cut(s) 517, 898
BccI CCATC 3 cut(s) 497, 539, 638
BcgI CGANNNNNNTGC 2 cut(s) 173, 207
BciT130I CCWGG 2 cut(s) 161, 398
BciVI GTATCC 1 cut(s) 615
BclI TGATCA 2 cut(s) 238, 928
BcnI CCSGG 1 cut(s) 831
BcoDI GTCTC 4 cut(s) 117, 228, 697, 740
BfoI RGCGCY 1 cut(s) 691
BfuI GTATCC 1 cut(s) 615
BisI GCNGC 2 cut(s) 531, 912
BlsI GCNGC 2 cut(s) 532, 913
Bme1390I CCNGG 3 cut(s) 161, 398, 831
Bme18I GGWCC 4 cut(s) 57, 180, 594, 763
BmgT120I GGNCC 4 cut(s) 57, 180, 594, 763
BmiI GGNNCC 4 cut(s) 155, 181, 596, 765
BmrFI CCNGG 3 cut(s) 161, 398, 831
BmsI GCATC 3 cut(s) 577, 898, 928
BoxI GACNNNNGTC 1 cut(s) 26
BpiI GAAGAC 1 cut(s) 813
BpuMI CCSGG 1 cut(s) 831
BsaBI GATNNNNATC 1 cut(s) 885
BsaHI GRCGYC 1 cut(s) 733
BsaJI CCNNGG 3 cut(s) 160, 799, 830
BsaXI ACNNNNNCTCC 2 cut(s) 565, 595
Bsc4I CCNNNNNNNGG 3 cut(s) 772, 830, 831
Bse3DI GCAATG 1 cut(s) 931
Bse8I GATNNNNATC 1 cut(s) 885
BseBI CCWGG 2 cut(s) 161, 398
BseDI CCNNGG 3 cut(s) 160, 799, 830
BseGI GGATG 4 cut(s) 271, 505, 554, 649
BseJI GATNNNNATC 1 cut(s) 885
BseLI CCNNNNNNNGG 3 cut(s) 772, 830, 831
BseMI GCAATG 1 cut(s) 931
BseMII CTCAG 1 cut(s) 92
BseRI GAGGAG 1 cut(s) 302
BseXI GCAGC 2 cut(s) 517, 898
BseYI CCCAGC 1 cut(s) 106
Bsh1236I CGCG 3 cut(s) 128, 130, 143
BshFI GGCC 2 cut(s) 92, 962
BshNI GGYRCC 1 cut(s) 153
BsiHKAI GWGCWC 1 cut(s) 77
BsiSI CCGG 1 cut(s) 830
BslFI GGGAC 3 cut(s) 580, 749, 968
BslI CCNNNNNNNGG 3 cut(s) 772, 830, 831
BsmAI GTCTC 4 cut(s) 117, 228, 697, 740
BsmBI CGTCTC 2 cut(s) 117, 740
BsmFI GGGAC 3 cut(s) 580, 749, 968
BsnI GGCC 2 cut(s) 92, 962
Bsp1286I GDGCHC 1 cut(s) 77
Bsp143I GATC 4 cut(s) 84, 144, 238, 928
BspACI CCGC 1 cut(s) 33
BspANI GGCC 2 cut(s) 92, 962
BspCNI CTCAG 1 cut(s) 93
BspFNI CGCG 3 cut(s) 128, 130, 143
BspLI GGNNCC 4 cut(s) 155, 181, 596, 765
BspQI GCTCTTC 1 cut(s) 224
BspT107I GGYRCC 1 cut(s) 153
BsrDI GCAATG 1 cut(s) 931
BssECI CCNNGG 3 cut(s) 160, 799, 830
BssMI GATC 4 cut(s) 84, 144, 238, 928
BssNI GRCGYC 1 cut(s) 733
BssT1I CCWWGG 1 cut(s) 799
Bst2UI CCWGG 2 cut(s) 161, 398
Bst4CI ACNGT 1 cut(s) 935
Bst6I CTCTTC 2 cut(s) 224, 456
BstACI GRCGYC 1 cut(s) 733
BstAPI GCANNNNNTGC 1 cut(s) 72
BstDEI CTNAG 1 cut(s) 101
BstEII GGTNACC 1 cut(s) 115
BstF5I GGATG 4 cut(s) 271, 505, 554, 649
BstFNI CGCG 3 cut(s) 128, 130, 143
BstH2I RGCGCY 1 cut(s) 691
BstHHI GCGC 2 cut(s) 130, 690
BstKTI GATC 4 cut(s) 87, 147, 241, 931
BstMAI GTCTC 4 cut(s) 117, 228, 697, 740
BstMBI GATC 4 cut(s) 84, 144, 238, 928
BstMWI GCNNNNNNNGC 2 cut(s) 41, 72
BstNI CCWGG 2 cut(s) 161, 398
BstPAI GACNNNNGTC 1 cut(s) 26
BstPI GGTNACC 1 cut(s) 115
BstSCI CCNGG 3 cut(s) 159, 396, 829
BstUI CGCG 3 cut(s) 128, 130, 143
BstV1I GCAGC 2 cut(s) 517, 898
BstV2I GAAGAC 1 cut(s) 813
BstXI CCANNNNNNTGG 1 cut(s) 462
BsuI GTATCC 1 cut(s) 615
BsuRI GGCC 2 cut(s) 92, 962
BtsCI GGATG 4 cut(s) 271, 505, 554, 649
BtsI GCAGTG 1 cut(s) 241
BtsIMutI CAGTG 3 cut(s) 241, 420, 940
CaiI CAGNNNCTG 2 cut(s) 226, 419
CfoI GCGC 2 cut(s) 130, 690
Cfr13I GGNCC 4 cut(s) 57, 180, 594, 763
CseI GACGC 2 cut(s) 134, 149
Csp6I GTAC 2 cut(s) 40, 436
CspCI CAANNNNNGTGG 2 cut(s) 146, 181
CviAII CATG 2 cut(s) 26, 512
CviQI GTAC 2 cut(s) 40, 436
DdeI CTNAG 1 cut(s) 101
DpnI GATC 4 cut(s) 86, 146, 240, 930
DpnII GATC 4 cut(s) 84, 144, 238, 928
DraI TTTAAA 1 cut(s) 972
Eam1104I CTCTTC 2 cut(s) 224, 456
EarI CTCTTC 2 cut(s) 224, 456
Eco130I CCWWGG 1 cut(s) 799
Eco47I GGWCC 4 cut(s) 57, 180, 594, 763
Eco47III AGCGCT 1 cut(s) 689
Eco57I CTGAAG 2 cut(s) 154, 248
Eco91I GGTNACC 1 cut(s) 115
EcoO109I RGGNCCY 2 cut(s) 57, 763
EcoO65I GGTNACC 1 cut(s) 115
EcoRII CCWGG 2 cut(s) 159, 396
EcoT14I CCWWGG 1 cut(s) 799
ErhI CCWWGG 1 cut(s) 799
Esp3I CGTCTC 2 cut(s) 117, 740
FaeI CATG 2 cut(s) 29, 515
FalI AAGNNNNNCTT 2 cut(s) 435, 467
FaqI GGGAC 3 cut(s) 580, 749, 968
FatI CATG 2 cut(s) 25, 511
FauNDI CATATG 1 cut(s) 843
FbaI TGATCA 2 cut(s) 238, 928
Fnu4HI GCNGC 2 cut(s) 531, 912
FokI GGATG 4 cut(s) 278, 512, 561, 656
Fsp4HI GCNGC 2 cut(s) 531, 912
GlaI GCGC 2 cut(s) 129, 689
GluI GCNGC 2 cut(s) 531, 912
GsaI CCCAGC 1 cut(s) 110
HaeII RGCGCY 1 cut(s) 691
HaeIII GGCC 2 cut(s) 92, 962
HapII CCGG 1 cut(s) 830
HgaI GACGC 2 cut(s) 134, 149
HhaI GCGC 2 cut(s) 130, 690
Hin1I GRCGYC 1 cut(s) 733
Hin1II CATG 2 cut(s) 29, 515
Hin6I GCGC 2 cut(s) 128, 688
HinP1I GCGC 2 cut(s) 128, 688
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HindIII AAGCTT 2 cut(s) 246, 1002
HinfI GANTC 5 cut(s) 293, 515, 576, 719, 886
HpaII CCGG 1 cut(s) 830
HphI GGTGA 3 cut(s) 22, 109, 917
Hpy166II GTNNAC 2 cut(s) 202, 718
Hpy188I TCNGA 5 cut(s) 102, 184, 228, 421, 477
Hpy188III TCNNGA 3 cut(s) 242, 491, 667
Hpy8I GTNNAC 2 cut(s) 202, 718
HpyAV CCTTC 5 cut(s) 379, 421, 460, 618, 754
HpyCH4III ACNGT 1 cut(s) 935
HpyCH4IV ACGT 1 cut(s) 733
HpyCH4V TGCA 4 cut(s) 66, 511, 557, 956
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 72
HpyF3I CTNAG 1 cut(s) 101
HpySE526I ACGT 1 cut(s) 733
Hsp92I GRCGYC 1 cut(s) 733
Hsp92II CATG 2 cut(s) 29, 515
HspAI GCGC 2 cut(s) 128, 688
Ksp22I TGATCA 2 cut(s) 238, 928
Kzo9I GATC 4 cut(s) 84, 144, 238, 928
LguI GCTCTTC 1 cut(s) 224
LmnI GCTCC 1 cut(s) 630
Lsp1109I GCAGC 2 cut(s) 517, 898
LweI GCATC 3 cut(s) 577, 898, 928
MaeII ACGT 1 cut(s) 733
MaeIII GTNAC 2 cut(s) 28, 115
MalI GATC 4 cut(s) 86, 146, 240, 930
MboI GATC 4 cut(s) 84, 144, 238, 928
MhlI GDGCHC 1 cut(s) 77
MluCI AATT 5 cut(s) 256, 269, 525, 726, 768
MlyI GAGTC 2 cut(s) 585, 713
MmeI TCCRAC 2 cut(s) 75, 828
MnlI CCTC 8 cut(s) 70, 82, 96, 280, 283, 634, 952, 982
MseI TTAA 4 cut(s) 210, 750, 948, 971
MslI CAYNNNNRTG 3 cut(s) 460, 881, 936
MspI CCGG 1 cut(s) 830
MspR9I CCNGG 3 cut(s) 161, 398, 831
MvaI CCWGG 2 cut(s) 161, 398
MvnI CGCG 3 cut(s) 128, 130, 143
MwoI GCNNNNNNNGC 2 cut(s) 41, 72
NciI CCSGG 1 cut(s) 831
NdeI CATATG 1 cut(s) 843
NdeII GATC 4 cut(s) 84, 144, 238, 928
NlaIII CATG 2 cut(s) 29, 515
NlaIV GGNNCC 4 cut(s) 155, 181, 596, 765
NmeAIII GCCGAG 1 cut(s) 61
NmuCI GTSAC 2 cut(s) 28, 115
PciSI GCTCTTC 1 cut(s) 224
PfeI GAWTC 3 cut(s) 293, 515, 886
PkrI GCNGC 2 cut(s) 532, 913
PleI GAGTC 2 cut(s) 584, 713
PpsI GAGTC 2 cut(s) 584, 713
PpuMI RGGWCCY 2 cut(s) 57, 763
PshAI GACNNNNGTC 1 cut(s) 26
Psp5II RGGWCCY 2 cut(s) 57, 763
Psp6I CCWGG 2 cut(s) 159, 396
PspEI GGTNACC 1 cut(s) 115
PspFI CCCAGC 1 cut(s) 106
PspGI CCWGG 2 cut(s) 159, 396
PspN4I GGNNCC 4 cut(s) 155, 181, 596, 765
PspPI GGNCC 4 cut(s) 57, 180, 594, 763
PspPPI RGGWCCY 2 cut(s) 57, 763
PstNI CAGNNNCTG 2 cut(s) 226, 419
RsaI GTAC 2 cut(s) 41, 437
RsaNI GTAC 2 cut(s) 40, 436
RseI CAYNNNNRTG 3 cut(s) 460, 881, 936
SapI GCTCTTC 1 cut(s) 224
SaqAI TTAA 4 cut(s) 210, 750, 948, 971
SatI GCNGC 2 cut(s) 531, 912
Sau3AI GATC 4 cut(s) 84, 144, 238, 928
Sau96I GGNCC 4 cut(s) 57, 180, 594, 763
SchI GAGTC 2 cut(s) 585, 713
ScrFI CCNGG 3 cut(s) 161, 398, 831
SduI GDGCHC 1 cut(s) 77
SfaNI GCATC 3 cut(s) 577, 898, 928
SinI GGWCC 4 cut(s) 57, 180, 594, 763
SmiMI CAYNNNNRTG 3 cut(s) 460, 881, 936
Sse9I AATT 5 cut(s) 256, 269, 525, 726, 768
SsiI CCGC 1 cut(s) 33
StyD4I CCNGG 3 cut(s) 159, 396, 829
StyI CCWWGG 1 cut(s) 799
TaaI ACNGT 1 cut(s) 935
TaiI ACGT 1 cut(s) 736
TaqI TCGA 3 cut(s) 20, 77, 87
TasI AATT 5 cut(s) 256, 269, 525, 726, 768
TatI WGTACW 1 cut(s) 435
TfiI GAWTC 3 cut(s) 293, 515, 886
Tru1I TTAA 4 cut(s) 210, 750, 948, 971
Tru9I TTAA 4 cut(s) 210, 750, 948, 971
TscAI CASTG 3 cut(s) 241, 420, 940
TseFI GTSAC 2 cut(s) 28, 115
TseI GCWGC 2 cut(s) 530, 911
Tsp45I GTSAC 2 cut(s) 28, 115
TspDTI ATGAA 7 cut(s) 282, 357, 363, 369, 687, 769, 899
TspGWI ACGGA 1 cut(s) 643
TspRI CASTG 3 cut(s) 241, 420, 940
VpaK11BI GGWCC 4 cut(s) 57, 180, 594, 763
XapI RAATTY 2 cut(s) 256, 269
ZraI GACGTC 1 cut(s) 734
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.