Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0001794

Physical Location & Seq

Genomic Coordinates Forward (+)

27543646 .. 27545987

Gene Structure 2342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGAGTCGTCTCTGCGAGTTCGAAGATTGAACGAAGTTCCTTCGGCCACAGACTTCGCATCTCGGATCGAATCCGAGAACGTTCCCGCCGTTTTCAGCGGCTGCGTCACAGATTGGAAAGCTTTCTCCAATTGGAATCCATGTAATGGCGGTCTCGATTATTTGCAGGAGCGGGTTGGATTGTGTGTTGTGGAAGCTATGCTATCTGATTCAGCACCTGTATTCAATGGTGATATTAGAAGCCATGAGAGGGTACCGCTGCAATTTTCTGCATTCATTGGTCTATGTAAGAAACGCATGCATCATTCGGAGGATGGTTCCGGTGTTGAATCAGATCGGCATGGGCTACTGGAGTCTTCATCTGAGTATGACAGTAAGCCCTATGAGGATGCTCCTCAACAAATCTATTTAGCACAGATCCCAATAATCAATACTGAAACTGAAGAGAGGGTTCAACTAGGATCTTTGAGGGAAGATATCCAAACGCCTGTATTTTTGGAGGACAAAGTAATAGTTTCTATCAACTTGTGGATGAACAATGCTCAAGCTAGATCAAGTACTCACTATGATCCACACCATAACCTTCTCTGCGTAGTCTCTGGCGGCAAACAAGTGGTTTTATGGCCTCCTTCAGCAAGTCCTATGTTATACCCTAGGCCAATATATGGGGAGGCATCAAATCACAGTTCTGTTCCTTTAGAGAACCCAAACTTTTCAAATTATCCAAGAGCACAATGTTTAATGCAGCACTCGCAGAAGCTTACTCTTCAGCCAGGTGACGCCCTTTTCATTCCTGAAGGCTGGTTCCACCAGGTGGATAGTGATGATCGACCATTGCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000278 GO:0003674 GO:0003682 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007049 GO:0008150 GO:0008152 GO:0008214 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016491 GO:0016569 GO:0016570 GO:0016577 GO:0016705 GO:0016706 GO:0019219 GO:0019222 GO:0019538 GO:0022402 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032451 GO:0032452 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051213 GO:0051252 GO:0051254 GO:0051276 GO:0051864 GO:0055114 GO:0060255 GO:0065007 GO:0070076 GO:0070544 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:1902680 GO:1903047 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_8

Protein Analysis

281

Amino Acids

31.41

Weight (kDa)

5.09

Isoelectric Point (pI)

57.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_8	PF13621	17 - 276	2.9e-47	Cupin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001794)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26135 AT5G19840 AT5G19840
fragaria_vesca	FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940 FvH4_2g22940
malus_domestica	MD03G1258000.v1.1 MD03G1258100.v1.1 MD11G1278700.v1.1
prunus_persica	Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1 Prupe.8G234700_v2.0.a1
pyrus_communis	pycom03g20440 pycom11g24620 pycom11g24630
rosa_chinensis	RchiOBHm_Chr6g0289901 RchiOBHm_Chr6g0289911 RchiOBHm_Chr6g0289951
rosa_laevigata	RLG00000012257
rosa_multiflora	Rmu_sc0001312.1_g000002 Rmu_sc0023926.1_g000002
rosa_roxburghii	Rroxscaffold_7G00177480
rosa_rugosa	Rorug06G0208000
rosa_samantha	Rh6AG319300 Rh6BG326300 Rh6BG326400 Rh6CG332300 Rh6DG318000 Rh6DG318100
rosa_wichuraiana	Rw0G009780 Rw0G009800 Rw6G027540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	253
AccB1I	GGYRCC	1 cut(s)	253
AccB7I	CCANNNNNTGG	3 cut(s)	146, 665, 814
AccBSI	CCGCTC	1 cut(s)	172
AciI	CCGC	6 cut(s)	87, 99, 150, 172, 257, 603
AclI	AACGTT	1 cut(s)	81
AclWI	GGATC	4 cut(s)	74, 412, 469, 563
AcoI	YGGCCR	1 cut(s)	45
AcuI	CTGAAG	4 cut(s)	462, 615, 752, 816
AcyI	GRCGYC	1 cut(s)	780
AdeI	CACNNNGTG	1 cut(s)	814
AfaI	GTAC	2 cut(s)	255, 559
AfiI	CCNNNNNNNGG	4 cut(s)	146, 250, 665, 814
AgsI	TTSAA	5 cut(s)	31, 226, 329, 455, 717
AjnI	CCWGG	2 cut(s)	772, 810
AluBI	AGCT	4 cut(s)	122, 197, 548, 760
AluI	AGCT	4 cut(s)	122, 197, 548, 760
Alw21I	GWGCWC	1 cut(s)	733
Alw26I	GTCTC	3 cut(s)	15, 158, 601
AlwI	GGATC	4 cut(s)	74, 412, 469, 563
AlwNI	CAGNNNCTG	2 cut(s)	102, 218
AoxI	GGCC	3 cut(s)	45, 623, 656
ApeKI	GCWGC	3 cut(s)	102, 259, 745
Asp700I	GAANNNNTTC	1 cut(s)	122
Asp718I	GGTACC	1 cut(s)	253
AspA2I	CCTAGG	1 cut(s)	653
AsuHPI	GGTGA	2 cut(s)	242, 788
AsuII	TTCGAA	1 cut(s)	22
AvrII	CCTAGG	1 cut(s)	653
BanI	GGYRCC	1 cut(s)	253
BbsI	GAAGAC	1 cut(s)	348
Bbv12I	GWGCWC	1 cut(s)	733
BbvI	GCAGC	3 cut(s)	89, 246, 757
BccI	CCATC	1 cut(s)	308
BceAI	ACGGC	2 cut(s)	74, 823
BciT130I	CCWGG	2 cut(s)	774, 812
BcoDI	GTCTC	3 cut(s)	15, 158, 601
BfaI	CTAG	3 cut(s)	458, 549, 654
BisI	GCNGC	5 cut(s)	100, 103, 260, 604, 746
BlnI	CCTAGG	1 cut(s)	653
BlsI	GCNGC	5 cut(s)	101, 104, 261, 605, 747
BmcAI	AGTACT	1 cut(s)	559
Bme1390I	CCNGG	2 cut(s)	774, 812
BmiI	GGNNCC	3 cut(s)	255, 319, 806
BmrFI	CCNGG	2 cut(s)	774, 812
BmsI	GCATC	4 cut(s)	68, 310, 379, 683
BpiI	GAAGAC	1 cut(s)	348
BpmI	CTGGAG	1 cut(s)	371
Bpu14I	TTCGAA	1 cut(s)	22
BpuEI	CTTGAG	1 cut(s)	528
BsaHI	GRCGYC	1 cut(s)	780
BsaI	GGTCTC	1 cut(s)	158
BsaJI	CCNNGG	1 cut(s)	653
BsaWI	WCCGGW	1 cut(s)	320
Bsc4I	CCNNNNNNNGG	4 cut(s)	146, 250, 665, 814
Bse1I	ACTGG	1 cut(s)	354
Bse3DI	GCAATG	1 cut(s)	833
BseBI	CCWGG	2 cut(s)	774, 812
BseDI	CCNNGG	1 cut(s)	653
BseGI	GGATG	3 cut(s)	319, 394, 537
BseLI	CCNNNNNNNGG	4 cut(s)	146, 250, 665, 814
BseMI	GCAATG	1 cut(s)	833
BseMII	CTCAG	1 cut(s)	354
BseNI	ACTGG	1 cut(s)	354
BseRI	GAGGAG	1 cut(s)	384
BseXI	GCAGC	3 cut(s)	89, 246, 757
BshFI	GGCC	3 cut(s)	47, 625, 658
BshNI	GGYRCC	1 cut(s)	253
BsiHKAI	GWGCWC	1 cut(s)	733
BsiSI	CCGG	1 cut(s)	321
BslI	CCNNNNNNNGG	4 cut(s)	146, 250, 665, 814
BsmAI	GTCTC	3 cut(s)	15, 158, 601
BsmBI	CGTCTC	1 cut(s)	15
BsmI	GAATGC	1 cut(s)	272
BsnI	GGCC	3 cut(s)	47, 625, 658
Bso31I	GGTCTC	1 cut(s)	158
Bsp119I	TTCGAA	1 cut(s)	22
Bsp1286I	GDGCHC	1 cut(s)	733
Bsp143I	GATC	7 cut(s)	66, 334, 417, 461, 551, 568, 826
BspACI	CCGC	6 cut(s)	87, 99, 150, 172, 257, 603
BspANI	GGCC	3 cut(s)	47, 625, 658
BspCNI	CTCAG	1 cut(s)	355
BspLI	GGNNCC	3 cut(s)	255, 319, 806
BspPI	GGATC	4 cut(s)	74, 412, 469, 563
BspT104I	TTCGAA	1 cut(s)	22
BspT107I	GGYRCC	1 cut(s)	253
BspTNI	GGTCTC	1 cut(s)	158
BsrBI	CCGCTC	1 cut(s)	172
BsrDI	GCAATG	1 cut(s)	833
BsrI	ACTGG	1 cut(s)	354
BssECI	CCNNGG	1 cut(s)	653
BssMI	GATC	7 cut(s)	66, 334, 417, 461, 551, 568, 826
BssNI	GRCGYC	1 cut(s)	780
BssT1I	CCWWGG	1 cut(s)	653
Bst2UI	CCWGG	2 cut(s)	774, 812
Bst4CI	ACNGT	2 cut(s)	374, 686
Bst6I	CTCTTC	2 cut(s)	438, 771
BstACI	GRCGYC	1 cut(s)	780
BstBI	TTCGAA	1 cut(s)	22
BstC8I	GCNNGC	1 cut(s)	299
BstDEI	CTNAG	1 cut(s)	363
BstF5I	GGATG	3 cut(s)	319, 394, 537
BstKTI	GATC	7 cut(s)	69, 337, 420, 464, 554, 571, 829
BstMAI	GTCTC	3 cut(s)	15, 158, 601
BstMBI	GATC	7 cut(s)	66, 334, 417, 461, 551, 568, 826
BstMWI	GCNNNNNNNGC	1 cut(s)	751
BstNI	CCWGG	2 cut(s)	774, 812
BstNSI	RCATGY	1 cut(s)	301
BstSCI	CCNGG	2 cut(s)	772, 810
BstV1I	GCAGC	3 cut(s)	89, 246, 757
BstV2I	GAAGAC	1 cut(s)	348
BstX2I	RGATCY	2 cut(s)	417, 461
BstYI	RGATCY	2 cut(s)	417, 461
BsuRI	GGCC	3 cut(s)	47, 625, 658
BtsCI	GGATG	3 cut(s)	319, 394, 537
Cac8I	GCNNGC	1 cut(s)	299
CaiI	CAGNNNCTG	2 cut(s)	102, 218
CseI	GACGC	2 cut(s)	94, 788
CsiI	ACCWGGT	1 cut(s)	810
Csp6I	GTAC	2 cut(s)	254, 558
CviAII	CATG	4 cut(s)	141, 245, 298, 341
CviQI	GTAC	2 cut(s)	254, 558
DdeI	CTNAG	1 cut(s)	363
DpnI	GATC	7 cut(s)	68, 336, 419, 463, 553, 570, 828
DpnII	GATC	7 cut(s)	66, 334, 417, 461, 551, 568, 826
DraIII	CACNNNGTG	1 cut(s)	814
EaeI	YGGCCR	1 cut(s)	45
Eam1104I	CTCTTC	2 cut(s)	438, 771
EarI	CTCTTC	2 cut(s)	438, 771
Eco130I	CCWWGG	1 cut(s)	653
Eco31I	GGTCTC	1 cut(s)	158
Eco32I	GATATC	1 cut(s)	478
Eco57I	CTGAAG	4 cut(s)	462, 615, 752, 816
EcoRII	CCWGG	2 cut(s)	772, 810
EcoRV	GATATC	1 cut(s)	478
EcoT14I	CCWWGG	1 cut(s)	653
EcoT22I	ATGCAT	1 cut(s)	303
ErhI	CCWWGG	1 cut(s)	653
Esp3I	CGTCTC	1 cut(s)	15
FaeI	CATG	4 cut(s)	144, 248, 301, 344
FatI	CATG	4 cut(s)	140, 244, 297, 340
FauI	CCCGC	2 cut(s)	94, 165
Fnu4HI	GCNGC	5 cut(s)	100, 103, 260, 604, 746
FokI	GGATG	3 cut(s)	326, 401, 544
Fsp4HI	GCNGC	5 cut(s)	100, 103, 260, 604, 746
FspBI	CTAG	3 cut(s)	458, 549, 654
GluI	GCNGC	5 cut(s)	100, 103, 260, 604, 746
GsuI	CTGGAG	1 cut(s)	371
HaeIII	GGCC	3 cut(s)	47, 625, 658
HapII	CCGG	1 cut(s)	321
HgaI	GACGC	2 cut(s)	94, 788
Hin1I	GRCGYC	1 cut(s)	780
Hin1II	CATG	4 cut(s)	144, 248, 301, 344
HindIII	AAGCTT	2 cut(s)	120, 758
HinfI	GANTC	6 cut(s)	5, 71, 136, 209, 329, 353
HpaII	CCGG	1 cut(s)	321
HphI	GGTGA	2 cut(s)	242, 788
Hpy188I	TCNGA	6 cut(s)	66, 76, 208, 310, 334, 364
Hpy188III	TCNNGA	2 cut(s)	155, 794
HpyAV	CCTTC	4 cut(s)	51, 593, 639, 791
HpyCH4III	ACNGT	2 cut(s)	374, 686
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	5 cut(s)	166, 262, 272, 301, 745
HpyF10VI	GCNNNNNNNGC	1 cut(s)	751
HpyF3I	CTNAG	1 cut(s)	363
HpySE526I	ACGT	1 cut(s)	81
Hsp92I	GRCGYC	1 cut(s)	780
Hsp92II	CATG	4 cut(s)	144, 248, 301, 344
KpnI	GGTACC	1 cut(s)	257
Kzo9I	GATC	7 cut(s)	66, 334, 417, 461, 551, 568, 826
LmnI	GCTCC	2 cut(s)	169, 397
Lsp1109I	GCAGC	3 cut(s)	89, 246, 757
LweI	GCATC	4 cut(s)	68, 310, 379, 683
MabI	ACCWGGT	1 cut(s)	810
MaeI	CTAG	3 cut(s)	458, 549, 654
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	2 cut(s)	106, 776
MalI	GATC	7 cut(s)	68, 336, 419, 463, 553, 570, 828
MbiI	CCGCTC	1 cut(s)	172
MboI	GATC	7 cut(s)	66, 334, 417, 461, 551, 568, 826
MboII	GAAGA	5 cut(s)	36, 348, 455, 485, 758
MfeI	CAATTG	1 cut(s)	130
MflI	RGATCY	2 cut(s)	417, 461
MhlI	GDGCHC	1 cut(s)	733
MluCI	AATT	3 cut(s)	130, 263, 718
MlyI	GAGTC	2 cut(s)	14, 362
MmeI	TCCRAC	1 cut(s)	157
MnlI	CCTC	9 cut(s)	243, 304, 379, 405, 441, 462, 493, 636, 664
Mph1103I	ATGCAT	1 cut(s)	303
MroXI	GAANNNNTTC	1 cut(s)	122
MseI	TTAA	1 cut(s)	740
MslI	CAYNNNNRTG	1 cut(s)	838
MspA1I	CMGCKG	2 cut(s)	99, 259
MspI	CCGG	1 cut(s)	321
MspR9I	CCNGG	2 cut(s)	774, 812
MunI	CAATTG	1 cut(s)	130
Mva1269I	GAATGC	1 cut(s)	272
MvaI	CCWGG	2 cut(s)	774, 812
MwoI	GCNNNNNNNGC	1 cut(s)	751
NdeII	GATC	7 cut(s)	66, 334, 417, 461, 551, 568, 826
NlaIII	CATG	4 cut(s)	144, 248, 301, 344
NlaIV	GGNNCC	3 cut(s)	255, 319, 806
NmuCI	GTSAC	2 cut(s)	106, 776
NsiI	ATGCAT	1 cut(s)	303
NspI	RCATGY	1 cut(s)	301
NspV	TTCGAA	1 cut(s)	22
PaeI	GCATGC	1 cut(s)	301
PcsI	WCGNNNNNNNCGW	1 cut(s)	87
PctI	GAATGC	1 cut(s)	272
PdmI	GAANNNNTTC	1 cut(s)	122
PfeI	GAWTC	4 cut(s)	71, 136, 209, 329
PflMI	CCANNNNNTGG	3 cut(s)	146, 665, 814
PkrI	GCNGC	5 cut(s)	101, 104, 261, 605, 747
PleI	GAGTC	2 cut(s)	13, 361
PpsI	GAGTC	2 cut(s)	13, 361
Psp1406I	AACGTT	1 cut(s)	81
Psp6I	CCWGG	2 cut(s)	772, 810
PspGI	CCWGG	2 cut(s)	772, 810
PspN4I	GGNNCC	3 cut(s)	255, 319, 806
PstNI	CAGNNNCTG	2 cut(s)	102, 218
PsuI	RGATCY	2 cut(s)	417, 461
RsaI	GTAC	2 cut(s)	255, 559
RsaNI	GTAC	2 cut(s)	254, 558
RseI	CAYNNNNRTG	1 cut(s)	838
SaqAI	TTAA	1 cut(s)	740
SatI	GCNGC	5 cut(s)	100, 103, 260, 604, 746
Sau3AI	GATC	7 cut(s)	66, 334, 417, 461, 551, 568, 826
ScaI	AGTACT	1 cut(s)	559
SchI	GAGTC	2 cut(s)	14, 362
ScrFI	CCNGG	2 cut(s)	774, 812
SduI	GDGCHC	1 cut(s)	733
SetI	ASST	9 cut(s)	84, 124, 199, 220, 550, 585, 762, 778, 816
SexAI	ACCWGGT	1 cut(s)	810
SfaNI	GCATC	4 cut(s)	68, 310, 379, 683
SfuI	TTCGAA	1 cut(s)	22
SmiMI	CAYNNNNRTG	1 cut(s)	838
SmlI	CTYRAG	1 cut(s)	543
SmoI	CTYRAG	1 cut(s)	543
SphI	GCATGC	1 cut(s)	301
Sse9I	AATT	3 cut(s)	130, 263, 718
SsiI	CCGC	6 cut(s)	87, 99, 150, 172, 257, 603
SspMI	CTAG	3 cut(s)	458, 549, 654
StyD4I	CCNGG	2 cut(s)	772, 810
StyI	CCWWGG	1 cut(s)	653
TaaI	ACNGT	2 cut(s)	374, 686
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	4 cut(s)	22, 69, 156, 829
TasI	AATT	3 cut(s)	130, 263, 718
TatI	WGTACW	1 cut(s)	557
TauI	GCSGC	2 cut(s)	102, 606
TfiI	GAWTC	4 cut(s)	71, 136, 209, 329
Tru1I	TTAA	1 cut(s)	740
Tru9I	TTAA	1 cut(s)	740
TseFI	GTSAC	2 cut(s)	106, 776
TseI	GCWGC	3 cut(s)	102, 259, 745
Tsp45I	GTSAC	2 cut(s)	106, 776
TspDTI	ATGAA	4 cut(s)	265, 348, 548, 778
Van91I	CCANNNNNTGG	3 cut(s)	146, 665, 814
XceI	RCATGY	1 cut(s)	301
XmaJI	CCTAGG	1 cut(s)	653
XmnI	GAANNNNTTC	1 cut(s)	122
XspI	CTAG	3 cut(s)	458, 549, 654
ZrmI	AGTACT	1 cut(s)	559
Zsp2I	ATGCAT	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.