Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00012419

Orthogroup ID

OG0002232

Physical Location & Seq

Genomic Coordinates Forward (+)

429624 .. 431129

Gene Structure 1506 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12419g00200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGAATACACAACAAGCTTTCCATCCTAAATCTTCTGCTAACGGTTTTGGCCGTCGAAGAGGTGCAAGGGAAGGGGGTCTTAGGGTTGAGAATAAGTCAAAGTCTGGAACAGCAAACCACGGCAGATTAACAAGCAGAAAATCTGGAAACACTGAGAGTCCTTCACGTGATCGATTAGTATACATGACCACATGTCTTATTGGGCATAATGTGGAAGTACAGGTGGAAAATGGATCTGTATACTCTGGAATATTTCATGCAACAAACGCTGAAAGGGACTTTGGAATCATCTTGAAAATGGCACGAATGATAAAGGATGGTTCTGTATGTGGACAAAAGTCTACGACAGAGTCAGTTAGCAAGGCTCCTTCCAAGACTTTAATTATACCTGCCAAGGAACTTGTCCAAGTTATTGCAAAGGGTGTCTCAATAACGAGGGATGGATTGTTAAATGAGGTTCAGCATGAAAAACATCAGGACCTTATGATAGATTCCTTCATATCACAATCCCACCGTGGTGAGATGGATAGAGAGCTGGAACCGTGGGTACCTGATGAAGATGATCCACGTTGTCCTGAATTGGAAAATATATTTGATGGACAATGGAATAGGTTGTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009987 GO:0010494 GO:0010603 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0032991 GO:0033043 GO:0034063 GO:0034622 GO:0035770 GO:0036464 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051128 GO:0065003 GO:0065007 GO:0070925 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1902115 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LsmAD PAM2 SM-ATX

Protein Analysis

207

Amino Acids

22.95

Weight (kDa)

7.79

Isoelectric Point (pI)

39.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SM-ATX	PF14438	56 - 140	1.9e-28	Ataxin 2 SM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54170 AT3G14010 AT3G14010 AT3G14010 AT3G14010 AT3G14010
fragaria_vesca	FvH4_6g34380 FvH4_6g34380 FvH4_6g34380 FvH4_6g34380 FvH4_6g34380 FvH4_6g34380 FvH4_6g34380
malus_domestica	MD09G1186100.v1.1 MD17G1171000.v1.1
prunus_persica	Prupe.7G067500_v2.0.a1 Prupe.7G067500_v2.0.a1 Prupe.7G067500_v2.0.a1
pyrus_communis	pycom09g10330 pycom12419g00200 pycom12419g00210
rosa_chinensis	RchiOBHm_Chr2g0110201 RchiOBHm_Chr2g0144721
rosa_laevigata	RLG00000020103
rosa_multiflora	Rmu_co8157946.1_g000001 Rmu_sc0013504.1_g000008 Rmu_sc0020351.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101040 Rroxscaffold_3G00222660 Rroxscaffold_7G00205460
rosa_rugosa	Rorug02G0389100 Rorug02G0389100 Rorug02G0389200 Rorug02G0389300
rosa_samantha	Rh2AG440900 Rh2BG451300 Rh2CG220200 Rh2CG428200 Rh2DG461300 Rh3DG266300
rosa_wichuraiana	Rw2G021150 Rw2G036070 Rw7G020140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	397
Acc65I	GGTACC	1 cut(s)	547
AccB1I	GGYRCC	1 cut(s)	547
AccI	GTMKAC	3 cut(s)	180, 240, 341
AclWI	GGATC	2 cut(s)	241, 557
AcoI	YGGCCR	1 cut(s)	49
AcvI	CACGTG	1 cut(s)	167
AfaI	GTAC	2 cut(s)	219, 549
AflIII	ACRYGT	1 cut(s)	191
AgsI	TTSAA	1 cut(s)	295
AhdI	GACNNNNNGTC	1 cut(s)	192
AjuI	GAANNNNNNNTTGG	2 cut(s)	264, 296
AleI	CACNNNNGTG	1 cut(s)	516
AluBI	AGCT	2 cut(s)	17, 535
AluI	AGCT	2 cut(s)	17, 535
Alw26I	GTCTC	1 cut(s)	430
AlwI	GGATC	2 cut(s)	241, 557
AoxI	GGCC	1 cut(s)	49
Asp718I	GGTACC	1 cut(s)	547
AspS9I	GGNCC	1 cut(s)	478
AsuHPI	GGTGA	1 cut(s)	530
AvaII	GGWCC	1 cut(s)	478
BanI	GGYRCC	1 cut(s)	547
BbrPI	CACGTG	1 cut(s)	167
BccI	CCATC	5 cut(s)	30, 311, 434, 517, 590
BceAI	ACGGC	2 cut(s)	36, 136
BcoDI	GTCTC	1 cut(s)	430
BfuAI	ACCTGC	1 cut(s)	397
Bme18I	GGWCC	1 cut(s)	478
BmeRI	GACNNNNNGTC	1 cut(s)	192
BmgT120I	GGNCC	1 cut(s)	478
BmiI	GGNNCC	3 cut(s)	366, 540, 549
BoxI	GACNNNNGTC	1 cut(s)	337
Bsa29I	ATCGAT	1 cut(s)	172
BsaAI	YACGTR	1 cut(s)	167
BsaJI	CCNNGG	4 cut(s)	118, 393, 514, 542
BseCI	ATCGAT	1 cut(s)	172
BseDI	CCNNGG	4 cut(s)	118, 393, 514, 542
BseGI	GGATG	3 cut(s)	22, 322, 445
BseMII	CTCAG	1 cut(s)	144
BshFI	GGCC	1 cut(s)	51
BshNI	GGYRCC	1 cut(s)	547
BshVI	ATCGAT	1 cut(s)	172
BslFI	GGGAC	1 cut(s)	290
BsmAI	GTCTC	1 cut(s)	430
BsmFI	GGGAC	1 cut(s)	290
BsnI	GGCC	1 cut(s)	51
Bsp143I	GATC	3 cut(s)	169, 233, 562
BspANI	GGCC	1 cut(s)	51
BspCNI	CTCAG	1 cut(s)	145
BspDI	ATCGAT	1 cut(s)	172
BspLI	GGNNCC	3 cut(s)	366, 540, 549
BspMI	ACCTGC	1 cut(s)	397
BspPI	GGATC	2 cut(s)	241, 557
BspT107I	GGYRCC	1 cut(s)	547
BssECI	CCNNGG	4 cut(s)	118, 393, 514, 542
BssMI	GATC	3 cut(s)	169, 233, 562
BssNAI	GTATAC	2 cut(s)	181, 241
BssT1I	CCWWGG	1 cut(s)	393
Bst1107I	GTATAC	2 cut(s)	181, 241
Bst4CI	ACNGT	3 cut(s)	44, 515, 543
Bst6I	CTCTTC	1 cut(s)	52
BstBAI	YACGTR	1 cut(s)	167
BstDEI	CTNAG	2 cut(s)	80, 153
BstDSI	CCRYGG	3 cut(s)	118, 514, 542
BstF5I	GGATG	3 cut(s)	22, 322, 445
BstKTI	GATC	3 cut(s)	172, 236, 565
BstMAI	GTCTC	1 cut(s)	430
BstMBI	GATC	3 cut(s)	169, 233, 562
BstMWI	GCNNNNNNNGC	1 cut(s)	266
BstNSI	RCATGY	1 cut(s)	195
BstPAI	GACNNNNGTC	1 cut(s)	337
BstX2I	RGATCY	1 cut(s)	233
BstYI	RGATCY	1 cut(s)	233
BstZ17I	GTATAC	2 cut(s)	181, 241
Bsu15I	ATCGAT	1 cut(s)	172
BsuRI	GGCC	1 cut(s)	51
BsuTUI	ATCGAT	1 cut(s)	172
BtgI	CCRYGG	3 cut(s)	118, 514, 542
BtsCI	GGATG	3 cut(s)	22, 322, 445
BtsIMutI	CAGTG	1 cut(s)	150
BveI	ACCTGC	1 cut(s)	397
Cfr13I	GGNCC	1 cut(s)	478
ClaI	ATCGAT	1 cut(s)	172
Csp6I	GTAC	2 cut(s)	218, 548
CviAII	CATG	4 cut(s)	184, 192, 257, 464
CviJI	RGCY	4 cut(s)	17, 51, 365, 535
CviKI_1	RGCY	4 cut(s)	17, 51, 365, 535
CviQI	GTAC	2 cut(s)	218, 548
DdeI	CTNAG	2 cut(s)	80, 153
DpnI	GATC	3 cut(s)	171, 235, 564
DpnII	GATC	3 cut(s)	169, 233, 562
DriI	GACNNNNNGTC	1 cut(s)	192
EaeI	YGGCCR	1 cut(s)	49
Eam1104I	CTCTTC	1 cut(s)	52
Eam1105I	GACNNNNNGTC	1 cut(s)	192
EarI	CTCTTC	1 cut(s)	52
Eco130I	CCWWGG	1 cut(s)	393
Eco47I	GGWCC	1 cut(s)	478
Eco72I	CACGTG	1 cut(s)	167
EcoO109I	RGGNCCY	1 cut(s)	478
EcoT14I	CCWWGG	1 cut(s)	393
ErhI	CCWWGG	1 cut(s)	393
FaeI	CATG	4 cut(s)	187, 195, 260, 467
FalI	AAGNNNNNCTT	2 cut(s)	63, 95
FaqI	GGGAC	1 cut(s)	290
FatI	CATG	4 cut(s)	183, 191, 256, 463
FblI	GTMKAC	3 cut(s)	180, 240, 341
FokI	GGATG	3 cut(s)	9, 329, 452
HaeIII	GGCC	1 cut(s)	51
Hin1II	CATG	4 cut(s)	187, 195, 260, 467
HindIII	AAGCTT	1 cut(s)	15
HinfI	GANTC	4 cut(s)	157, 285, 350, 491
HphI	GGTGA	1 cut(s)	530
Hpy166II	GTNNAC	4 cut(s)	181, 241, 332, 342
Hpy188III	TCNNGA	6 cut(s)	105, 144, 246, 292, 476, 575
Hpy8I	GTNNAC	4 cut(s)	181, 241, 332, 342
Hpy99I	CGWCG	1 cut(s)	57
HpyAV	CCTTC	4 cut(s)	65, 171, 378, 505
HpyCH4III	ACNGT	3 cut(s)	44, 515, 543
HpyCH4IV	ACGT	2 cut(s)	166, 568
HpyCH4V	TGCA	3 cut(s)	65, 260, 416
HpyF10VI	GCNNNNNNNGC	1 cut(s)	266
HpyF3I	CTNAG	2 cut(s)	80, 153
HpySE526I	ACGT	2 cut(s)	166, 568
Hsp92II	CATG	4 cut(s)	187, 195, 260, 467
KpnI	GGTACC	1 cut(s)	551
Kzo9I	GATC	3 cut(s)	169, 233, 562
LmnI	GCTCC	1 cut(s)	370
LpnPI	CCDG	9 cut(s)	90, 129, 206, 231, 402, 461, 521, 564, 588
MaeII	ACGT	2 cut(s)	166, 568
MalI	GATC	3 cut(s)	171, 235, 564
MboI	GATC	3 cut(s)	169, 233, 562
MboII	GAAGA	3 cut(s)	24, 69, 569
MflI	RGATCY	1 cut(s)	233
MluCI	AATT	2 cut(s)	381, 578
MlyI	GAGTC	2 cut(s)	166, 359
MnlI	CCTC	3 cut(s)	53, 429, 448
MseI	TTAA	3 cut(s)	128, 380, 449
MslI	CAYNNNNRTG	1 cut(s)	516
MwoI	GCNNNNNNNGC	1 cut(s)	266
NdeII	GATC	3 cut(s)	169, 233, 562
NlaIII	CATG	4 cut(s)	187, 195, 260, 467
NlaIV	GGNNCC	3 cut(s)	366, 540, 549
NspI	RCATGY	1 cut(s)	195
OliI	CACNNNNGTG	1 cut(s)	516
PciI	ACATGT	1 cut(s)	191
PfeI	GAWTC	2 cut(s)	285, 491
PflFI	GACNNNGTC	1 cut(s)	349
PleI	GAGTC	2 cut(s)	165, 358
PmaCI	CACGTG	1 cut(s)	167
PmlI	CACGTG	1 cut(s)	167
PpsI	GAGTC	2 cut(s)	165, 358
Ppu21I	YACGTR	1 cut(s)	167
PpuMI	RGGWCCY	1 cut(s)	478
PscI	ACATGT	1 cut(s)	191
PshAI	GACNNNNGTC	1 cut(s)	337
Psp5II	RGGWCCY	1 cut(s)	478
PspCI	CACGTG	1 cut(s)	167
PspN4I	GGNNCC	3 cut(s)	366, 540, 549
PspPI	GGNCC	1 cut(s)	478
PspPPI	RGGWCCY	1 cut(s)	478
PsrI	GAACNNNNNNTAC	2 cut(s)	531, 563
PsuI	RGATCY	1 cut(s)	233
PsyI	GACNNNGTC	1 cut(s)	349
RsaI	GTAC	2 cut(s)	219, 549
RsaNI	GTAC	2 cut(s)	218, 548
RseI	CAYNNNNRTG	1 cut(s)	516
SaqAI	TTAA	3 cut(s)	128, 380, 449
Sau3AI	GATC	3 cut(s)	169, 233, 562
Sau96I	GGNCC	1 cut(s)	478
SchI	GAGTC	2 cut(s)	166, 359
SinI	GGWCC	1 cut(s)	478
SmiMI	CAYNNNNRTG	1 cut(s)	516
Sse9I	AATT	2 cut(s)	381, 578
SspI	AATATT	1 cut(s)	252
StyI	CCWWGG	1 cut(s)	393
TaaI	ACNGT	3 cut(s)	44, 515, 543
TaiI	ACGT	2 cut(s)	169, 571
TaqI	TCGA	2 cut(s)	55, 172
TasI	AATT	2 cut(s)	381, 578
TatI	WGTACW	1 cut(s)	217
TfiI	GAWTC	2 cut(s)	285, 491
Tru1I	TTAA	3 cut(s)	128, 380, 449
Tru9I	TTAA	3 cut(s)	128, 380, 449
TscAI	CASTG	1 cut(s)	157
TspDTI	ATGAA	5 cut(s)	17, 245, 480, 487, 570
TspRI	CASTG	1 cut(s)	157
Tth111I	GACNNNGTC	1 cut(s)	349
VpaK11BI	GGWCC	1 cut(s)	478
XceI	RCATGY	1 cut(s)	195
XmiI	GTMKAC	3 cut(s)	180, 240, 341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.