pycom12419g00210

Polyadenylate-binding protein-interacting protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00012419
Physical Location & Seq
Forward (+)
432117 .. 435731
3615 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12419g00210.5

Sequence Viewer

Length: 1098 bp
ATGGCAGAGGAAAGAGGCATTCACCTTCGTGGGGATATTGATGAGGAGACAAGATTCTCCTCTGTTTATCGGGGGGAAGTAGTTGATGATAGTGGATATCATGAAGATGAGGATATTTTGTTGGATACACTTAATACTGAAACCTTTGGAGATTCTACTGGTTCTTTAAGGAAGAGTTCAATTGACTGGACCACTGGGAAAAGAAACGATGGGGCGCCATCAAGCTCTTCATTTGTTGTGGATTACACACAATGTTCTGAGTCAAATGGTGCCCCAGATTTAGGCTGCTCTGGATCTTATGACCATGCTAGACAGCTGGCATCAGAAACACCTTTCAAGAGCTTCCCCTGTACAGCTGGTGAAAGAAGTGAAAGTAGAGAGGTAGACGGTGCCAGTGAGTCTGTAGTAAAGCCGAAGCTAGCTGAAGACAATCAAACGTCAGAACCAGACGATTCACAGCCATCATTGATTGGGAAGGAAGATGCGTTTGATAAAGGGGGATTATCCTCCAGTGCCACCTCTTATGCTTCTGCTCAGACTTCATCAAAAGGTCATGAGAAGACGGGTTCTAGTGACCTAGTAACTGGCAAATCACATGTTCAAACACAGACAGTAAATTCGCATGGACGACCTGGTAGTTCTGCATCTTCCAATTCGGAATTCCCAGCTGCTGTCTCTTCTTCTGGTGGACCTGGTTTATCACCGAGCTCATCTATGGGTTCGTTGTCCTCTGAGAAGTCAACATTGAATCCCCATGCAAAGGAATTCAAATTCAATCCGCATGCAAAGAGTTTTGTTCCATCTCAAGCGCCTGTTAGGCCTCCATCCCCTGTGTCTGATGGCTCCTTCTATTATCCAACTAACGCACCTGCTGTACCACATATGCCGGGCATGCCTGTTGGCATTGGAGGTGGGCCCTCTTTCGGACACCAACCTGTTATGTTTAATCCACAGACAATGCAAGCGCCCCAAGCCTTTTTTCATCCAAATGGGCCTCACCCTCAGTATGGGCAACAGATGCTTCTTGGCCATCCTAGGCAAGTCTTATACATGCCAAACTACCAACCTGAAATGCCTTACAAAGGACGAGATTATTAA

Protein Analysis

366

Amino Acids

38.91

Weight (kDa)

5.19

Isoelectric Point (pI)

54.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 877
Acc36I ACCTGC 1 cut(s) 877
AccB1I GGYRCC 3 cut(s) 214, 269, 389
AccI GTMKAC 1 cut(s) 384
AciI CCGC 1 cut(s) 779
AclWI GGATC 1 cut(s) 301
AcoI YGGCCR 1 cut(s) 1027
AcsI RAATTY 4 cut(s) 616, 659, 764, 770
AcuI CTGAAG 1 cut(s) 444
AcyI GRCGYC 1 cut(s) 215
AfaI GTAC 2 cut(s) 352, 876
AfiI CCNNNNNNNGG 6 cut(s) 31, 281, 760, 923, 1007, 1082
AflIII ACRYGT 1 cut(s) 595
AgsI TTSAA 6 cut(s) 180, 337, 602, 748, 769, 775
AjnI CCWGG 2 cut(s) 631, 691
AjuI GAANNNNNNNTTGG 4 cut(s) 644, 676, 963, 995
AleI CACNNNNGTG 1 cut(s) 27
AluBI AGCT 8 cut(s) 225, 316, 342, 356, 418, 422, 668, 708
AluI AGCT 8 cut(s) 225, 316, 342, 356, 418, 422, 668, 708
Alw21I GWGCWC 1 cut(s) 710
Alw26I GTCTC 2 cut(s) 41, 679
AlwI GGATC 1 cut(s) 301
AlwNI CAGNNNCTG 1 cut(s) 671
AoxI GGCC 4 cut(s) 818, 914, 992, 1027
ApaI GGGCCC 1 cut(s) 918
ApeKI GCWGC 2 cut(s) 285, 668
ApoI RAATTY 4 cut(s) 616, 659, 764, 770
ArsI GACNNNNNNTTYG 2 cut(s) 601, 633
AspA2I CCTAGG 1 cut(s) 1034
AspLEI GCGC 3 cut(s) 217, 811, 967
AspS9I GGNCC 5 cut(s) 189, 689, 914, 915, 992
AsuC2I CCSGG 1 cut(s) 888
AsuHPI GGTGA 4 cut(s) 14, 371, 693, 989
AsuNHI GCTAGC 1 cut(s) 418
AvaII GGWCC 2 cut(s) 189, 689
AvrII CCTAGG 1 cut(s) 1034
BaeGI GKGCMC 2 cut(s) 274, 918
BalI TGGCCA 1 cut(s) 1029
BanI GGYRCC 3 cut(s) 214, 269, 389
BanII GRGCYC 2 cut(s) 710, 918
BbsI GAAGAC 2 cut(s) 432, 566
Bbv12I GWGCWC 1 cut(s) 710
BbvI GCAGC 2 cut(s) 272, 655
BccI CCATC 7 cut(s) 203, 226, 469, 808, 832, 833, 1038
BciT130I CCWGG 2 cut(s) 633, 693
BciVI GTATCC 1 cut(s) 118
BcnI CCSGG 1 cut(s) 888
BcoDI GTCTC 2 cut(s) 41, 679
BfaI CTAG 5 cut(s) 309, 419, 570, 578, 1035
BfmI CTRYAG 1 cut(s) 402
BfoI RGCGCY 3 cut(s) 218, 812, 968
BfuAI ACCTGC 1 cut(s) 877
BfuI GTATCC 1 cut(s) 118
BglI GCCNNNNNGGC 1 cut(s) 817
BisI GCNGC 2 cut(s) 286, 669
BlnI CCTAGG 1 cut(s) 1034
BlsI GCNGC 2 cut(s) 287, 670
Bme1390I CCNGG 3 cut(s) 633, 693, 888
Bme18I GGWCC 2 cut(s) 189, 689
BmgT120I GGNCC 5 cut(s) 189, 689, 914, 915, 992
BmiI GGNNCC 5 cut(s) 216, 271, 391, 844, 916
BmrFI CCNGG 3 cut(s) 633, 693, 888
BmrI ACTGGG 1 cut(s) 204
BmsI GCATC 4 cut(s) 329, 472, 653, 1008
BmtI GCTAGC 1 cut(s) 422
BmuI ACTGGG 1 cut(s) 204
BpiI GAAGAC 2 cut(s) 432, 566
BpmI CTGGAG 1 cut(s) 493
BpuEI CTTGAG 1 cut(s) 789
BpuMI CCSGG 1 cut(s) 888
BsaHI GRCGYC 1 cut(s) 215
BsaJI CCNNGG 1 cut(s) 1034
Bsc4I CCNNNNNNNGG 6 cut(s) 31, 281, 760, 923, 1007, 1082
Bse1I ACTGG 6 cut(s) 163, 191, 199, 393, 510, 589
BseBI CCWGG 2 cut(s) 633, 693
BseDI CCNNGG 1 cut(s) 1034
BseGI GGATG 3 cut(s) 824, 982, 1030
BseLI CCNNNNNNNGG 6 cut(s) 31, 281, 760, 923, 1007, 1082
BseMII CTCAG 4 cut(s) 249, 548, 723, 1016
BseNI ACTGG 6 cut(s) 163, 191, 199, 393, 510, 589
BseRI GAGGAG 2 cut(s) 49, 59
BseSI GKGCMC 2 cut(s) 274, 918
BseXI GCAGC 2 cut(s) 272, 655
BseYI CCCAGC 1 cut(s) 664
BshFI GGCC 4 cut(s) 820, 916, 994, 1029
BshNI GGYRCC 3 cut(s) 214, 269, 389
BsiHKAI GWGCWC 1 cut(s) 710
BsiSI CCGG 1 cut(s) 887
BslI CCNNNNNNNGG 6 cut(s) 31, 281, 760, 923, 1007, 1082
BsmAI GTCTC 2 cut(s) 41, 679
BsmI GAATGC 1 cut(s) 18
BsnI GGCC 4 cut(s) 820, 916, 994, 1029
Bsp120I GGGCCC 1 cut(s) 914
Bsp1286I GDGCHC 3 cut(s) 274, 710, 918
Bsp1407I TGTACA 1 cut(s) 350
Bsp143I GATC 1 cut(s) 293
BspACI CCGC 1 cut(s) 779
BspANI GGCC 4 cut(s) 820, 916, 994, 1029
BspCNI CTCAG 4 cut(s) 250, 547, 724, 1015
BspHI TCATGA 2 cut(s) 100, 553
BspLI GGNNCC 5 cut(s) 216, 271, 391, 844, 916
BspMI ACCTGC 1 cut(s) 877
BspOI GCTAGC 1 cut(s) 422
BspPI GGATC 1 cut(s) 301
BspQI GCTCTTC 1 cut(s) 232
BspT107I GGYRCC 3 cut(s) 214, 269, 389
BsrGI TGTACA 1 cut(s) 350
BsrI ACTGG 6 cut(s) 163, 191, 199, 393, 510, 589
BssECI CCNNGG 1 cut(s) 1034
BssMI GATC 1 cut(s) 293
BssNI GRCGYC 1 cut(s) 215
BssT1I CCWWGG 1 cut(s) 1034
Bst2UI CCWGG 2 cut(s) 633, 693
Bst4CI ACNGT 2 cut(s) 389, 613
Bst6I CTCTTC 3 cut(s) 167, 232, 682
BstACI GRCGYC 1 cut(s) 215
BstAPI GCANNNNNTGC 1 cut(s) 1018
BstAUI TGTACA 1 cut(s) 350
BstC8I GCNNGC 5 cut(s) 318, 420, 783, 893, 963
BstDEI CTNAG 4 cut(s) 258, 534, 732, 1002
BstENI CCTNNNNNAGG 1 cut(s) 1080
BstF5I GGATG 3 cut(s) 824, 982, 1030
BstH2I RGCGCY 3 cut(s) 218, 812, 968
BstHHI GCGC 3 cut(s) 217, 811, 967
BstKTI GATC 1 cut(s) 296
BstMAI GTCTC 2 cut(s) 41, 679
BstMBI GATC 1 cut(s) 293
BstMWI GCNNNNNNNGC 4 cut(s) 817, 892, 971, 1018
BstNI CCWGG 2 cut(s) 633, 693
BstNSI RCATGY 4 cut(s) 599, 785, 895, 1054
BstSCI CCNGG 3 cut(s) 631, 691, 886
BstSFI CTRYAG 1 cut(s) 402
BstSLI GKGCMC 2 cut(s) 274, 918
BstV1I GCAGC 2 cut(s) 272, 655
BstV2I GAAGAC 2 cut(s) 432, 566
BstX2I RGATCY 1 cut(s) 293
BstYI RGATCY 1 cut(s) 293
BsuI GTATCC 1 cut(s) 118
BsuRI GGCC 4 cut(s) 820, 916, 994, 1029
BtsCI GGATG 3 cut(s) 824, 982, 1030
BtsIMutI CAGTG 3 cut(s) 192, 400, 517
BveI ACCTGC 1 cut(s) 877
Cac8I GCNNGC 5 cut(s) 318, 420, 783, 893, 963
CaiI CAGNNNCTG 1 cut(s) 671
CciI TCATGA 2 cut(s) 100, 553
CfoI GCGC 3 cut(s) 217, 811, 967
Cfr13I GGNCC 5 cut(s) 189, 689, 914, 915, 992
CsiI ACCWGGT 2 cut(s) 631, 691
Csp6I GTAC 2 cut(s) 351, 875
CviAII CATG 9 cut(s) 101, 305, 554, 596, 623, 755, 782, 892, 1051
CviQI GTAC 2 cut(s) 351, 875
DdeI CTNAG 4 cut(s) 258, 534, 732, 1002
DinI GGCGCC 1 cut(s) 216
DpnI GATC 1 cut(s) 295
DpnII GATC 1 cut(s) 293
EaeI YGGCCR 1 cut(s) 1027
Eam1104I CTCTTC 3 cut(s) 167, 232, 682
EarI CTCTTC 3 cut(s) 167, 232, 682
Ecl136II GAGCTC 1 cut(s) 708
Eco130I CCWWGG 1 cut(s) 1034
Eco147I AGGCCT 1 cut(s) 820
Eco24I GRGCYC 2 cut(s) 710, 918
Eco32I GATATC 1 cut(s) 98
Eco47I GGWCC 2 cut(s) 189, 689
Eco53kI GAGCTC 1 cut(s) 708
Eco57I CTGAAG 1 cut(s) 444
EcoICRI GAGCTC 1 cut(s) 708
EcoNI CCTNNNNNAGG 1 cut(s) 1080
EcoO109I RGGNCCY 1 cut(s) 915
EcoRI GAATTC 2 cut(s) 659, 764
EcoRII CCWGG 2 cut(s) 631, 691
EcoRV GATATC 1 cut(s) 98
EcoT14I CCWWGG 1 cut(s) 1034
EcoT38I GRGCYC 2 cut(s) 710, 918
EgeI GGCGCC 1 cut(s) 216
EheI GGCGCC 1 cut(s) 216
ErhI CCWWGG 1 cut(s) 1034
FaeI CATG 9 cut(s) 104, 308, 557, 599, 626, 758, 785, 895, 1054
FatI CATG 9 cut(s) 100, 304, 553, 595, 622, 754, 781, 891, 1050
FauNDI CATATG 1 cut(s) 882
FblI GTMKAC 1 cut(s) 384
Fnu4HI GCNGC 2 cut(s) 286, 669
FokI GGATG 3 cut(s) 811, 969, 1017
FriOI GRGCYC 2 cut(s) 710, 918
Fsp4HI GCNGC 2 cut(s) 286, 669
FspBI CTAG 5 cut(s) 309, 419, 570, 578, 1035
GlaI GCGC 3 cut(s) 216, 810, 966
GluI GCNGC 2 cut(s) 286, 669
GsaI CCCAGC 1 cut(s) 668
GsuI CTGGAG 1 cut(s) 493
HaeII RGCGCY 3 cut(s) 218, 812, 968
HaeIII GGCC 4 cut(s) 820, 916, 994, 1029
HapII CCGG 1 cut(s) 887
HhaI GCGC 3 cut(s) 217, 811, 967
Hin1I GRCGYC 1 cut(s) 215
Hin1II CATG 9 cut(s) 104, 308, 557, 599, 626, 758, 785, 895, 1054
Hin6I GCGC 3 cut(s) 215, 809, 965
HinP1I GCGC 3 cut(s) 215, 809, 965
HincII GTYRAC 1 cut(s) 741
HindII GTYRAC 1 cut(s) 741
HinfI GANTC 6 cut(s) 54, 152, 260, 398, 452, 748
HpaII CCGG 1 cut(s) 887
HphI GGTGA 4 cut(s) 14, 371, 693, 989
Hpy166II GTNNAC 3 cut(s) 385, 689, 741
Hpy188I TCNGA 8 cut(s) 259, 325, 442, 537, 658, 733, 838, 926
Hpy188III TCNNGA 4 cut(s) 101, 291, 337, 554
Hpy8I GTNNAC 3 cut(s) 385, 689, 741
HpyAV CCTTC 3 cut(s) 35, 469, 856
HpyCH4III ACNGT 2 cut(s) 389, 613
HpyCH4IV ACGT 1 cut(s) 437
HpyCH4V TGCA 4 cut(s) 644, 758, 785, 961
HpyF10VI GCNNNNNNNGC 4 cut(s) 817, 892, 971, 1018
HpyF3I CTNAG 4 cut(s) 258, 534, 732, 1002
HpySE526I ACGT 1 cut(s) 437
Hsp92I GRCGYC 1 cut(s) 215
Hsp92II CATG 9 cut(s) 104, 308, 557, 599, 626, 758, 785, 895, 1054
HspAI GCGC 3 cut(s) 215, 809, 965
KasI GGCGCC 1 cut(s) 214
Kzo9I GATC 1 cut(s) 293
LguI GCTCTTC 1 cut(s) 232
LmnI GCTCC 1 cut(s) 848
Lsp1109I GCAGC 2 cut(s) 272, 655
LweI GCATC 4 cut(s) 329, 472, 653, 1008
MabI ACCWGGT 2 cut(s) 631, 691
MaeI CTAG 5 cut(s) 309, 419, 570, 578, 1035
MaeII ACGT 1 cut(s) 437
MaeIII GTNAC 2 cut(s) 572, 580
MalI GATC 1 cut(s) 295
MboI GATC 1 cut(s) 293
MboII GAAGA 9 cut(s) 116, 184, 219, 437, 491, 571, 639, 669, 672
MfeI CAATTG 1 cut(s) 180
MflI RGATCY 1 cut(s) 293
MhlI GDGCHC 3 cut(s) 274, 710, 918
MlsI TGGCCA 1 cut(s) 1029
MluCI AATT 6 cut(s) 180, 616, 652, 659, 764, 770
MluNI TGGCCA 1 cut(s) 1029
Mly113I GGCGCC 1 cut(s) 215
MlyI GAGTC 2 cut(s) 269, 407
MmeI TCCRAC 2 cut(s) 102, 881
Mox20I TGGCCA 1 cut(s) 1029
MscI TGGCCA 1 cut(s) 1029
MseI TTAA 4 cut(s) 132, 167, 945, 1096
MslI CAYNNNNRTG 3 cut(s) 27, 105, 987
Msp20I TGGCCA 1 cut(s) 1029
MspA1I CMGCKG 3 cut(s) 316, 356, 668
MspI CCGG 1 cut(s) 887
MspR9I CCNGG 3 cut(s) 633, 693, 888
MunI CAATTG 1 cut(s) 180
Mva1269I GAATGC 1 cut(s) 18
MvaI CCWGG 2 cut(s) 633, 693
MwoI GCNNNNNNNGC 4 cut(s) 817, 892, 971, 1018
NarI GGCGCC 1 cut(s) 215
NciI CCSGG 1 cut(s) 888
NdeI CATATG 1 cut(s) 882
NdeII GATC 1 cut(s) 293
NheI GCTAGC 1 cut(s) 418
NlaIII CATG 9 cut(s) 104, 308, 557, 599, 626, 758, 785, 895, 1054
NlaIV GGNNCC 5 cut(s) 216, 271, 391, 844, 916
NmuCI GTSAC 1 cut(s) 572
NspI RCATGY 4 cut(s) 599, 785, 895, 1054
OliI CACNNNNGTG 1 cut(s) 27
PaeI GCATGC 2 cut(s) 785, 895
PagI TCATGA 2 cut(s) 100, 553
PaqCI CACCTGC 1 cut(s) 877
PceI AGGCCT 1 cut(s) 820
PciI ACATGT 1 cut(s) 595
PciSI GCTCTTC 1 cut(s) 232
PctI GAATGC 1 cut(s) 18
PfeI GAWTC 4 cut(s) 54, 152, 452, 748
PkrI GCNGC 2 cut(s) 287, 670
PleI GAGTC 2 cut(s) 268, 406
PluTI GGCGCC 1 cut(s) 218
PpsI GAGTC 2 cut(s) 268, 406
PscI ACATGT 1 cut(s) 595
Psp124BI GAGCTC 1 cut(s) 710
Psp6I CCWGG 2 cut(s) 631, 691
PspFI CCCAGC 1 cut(s) 664
PspGI CCWGG 2 cut(s) 631, 691
PspN4I GGNNCC 5 cut(s) 216, 271, 391, 844, 916
PspOMI GGGCCC 1 cut(s) 914
PspPI GGNCC 5 cut(s) 189, 689, 914, 915, 992
PstNI CAGNNNCTG 1 cut(s) 671
PsuI RGATCY 1 cut(s) 293
PvuII CAGCTG 3 cut(s) 316, 356, 668
RsaI GTAC 2 cut(s) 352, 876
RsaNI GTAC 2 cut(s) 351, 875
RseI CAYNNNNRTG 3 cut(s) 27, 105, 987
SacI GAGCTC 1 cut(s) 710
SapI GCTCTTC 1 cut(s) 232
SaqAI TTAA 4 cut(s) 132, 167, 945, 1096
SatI GCNGC 2 cut(s) 286, 669
Sau3AI GATC 1 cut(s) 293
Sau96I GGNCC 5 cut(s) 189, 689, 914, 915, 992
SchI GAGTC 2 cut(s) 269, 407
ScrFI CCNGG 3 cut(s) 633, 693, 888
SduI GDGCHC 3 cut(s) 274, 710, 918
SexAI ACCWGGT 2 cut(s) 631, 691
SfaNI GCATC 4 cut(s) 329, 472, 653, 1008
SfcI CTRYAG 1 cut(s) 402
SfoI GGCGCC 1 cut(s) 216
SinI GGWCC 2 cut(s) 189, 689
SmiMI CAYNNNNRTG 3 cut(s) 27, 105, 987
SmlI CTYRAG 1 cut(s) 804
SmoI CTYRAG 1 cut(s) 804
SphI GCATGC 2 cut(s) 785, 895
Sse9I AATT 6 cut(s) 180, 616, 652, 659, 764, 770
SseBI AGGCCT 1 cut(s) 820
SsiI CCGC 1 cut(s) 779
SspDI GGCGCC 1 cut(s) 214
SspMI CTAG 5 cut(s) 309, 419, 570, 578, 1035
SstI GAGCTC 1 cut(s) 710
StuI AGGCCT 1 cut(s) 820
StyD4I CCNGG 3 cut(s) 631, 691, 886
StyI CCWWGG 1 cut(s) 1034
TaaI ACNGT 2 cut(s) 389, 613
TaiI ACGT 1 cut(s) 440
TasI AATT 6 cut(s) 180, 616, 652, 659, 764, 770
TatI WGTACW 1 cut(s) 350
TfiI GAWTC 4 cut(s) 54, 152, 452, 748
Tru1I TTAA 4 cut(s) 132, 167, 945, 1096
Tru9I TTAA 4 cut(s) 132, 167, 945, 1096
TscAI CASTG 3 cut(s) 199, 400, 517
TseFI GTSAC 1 cut(s) 572
TseI GCWGC 2 cut(s) 285, 668
Tsp45I GTSAC 1 cut(s) 572
TspDTI ATGAA 4 cut(s) 117, 219, 531, 971
TspRI CASTG 3 cut(s) 199, 400, 517
VpaK11BI GGWCC 2 cut(s) 189, 689
XagI CCTNNNNNAGG 1 cut(s) 1080
XapI RAATTY 4 cut(s) 616, 659, 764, 770
XceI RCATGY 4 cut(s) 599, 785, 895, 1054
XmaJI CCTAGG 1 cut(s) 1034
XmiI GTMKAC 1 cut(s) 384
XspI CTAG 5 cut(s) 309, 419, 570, 578, 1035
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.