Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002232

Physical Location & Seq

Genomic Coordinates Forward (+)

21697916 .. 21699617

Gene Structure 1702 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48390

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGAGAGAGTTGGAAAGGGAAGCTTTACGAATAGCAAGAGAAATTGAGGGTGAGGATACCCAGGATCTGCATGCAGCAGAGGAAAGAGGCATGCAGCCGTATGAAAATTTTGATATTGATGAGGAGACCAGATACTCCTCTGTTTATCGGGGTGAGGTAGTTGATGATAGTGGATACGATGAAGATGAGGATATTTTATTGGATTCACGTAATACTGAGACCTTTGGAGGTTCTCCTGGTTCTGAGCAAAAGAGTTCAATCGATTGGACCAGTGGAAAAGGCAACCATGGAGTTCAGGTGCCTTCAAGCTCTTCATCTGTGGATTACACACACTATTCTGAATCAAATGTCGCCCCAGAGTTATATCGTTCTGGATCTTATGACCATGCTAGGCAGCTGGCATCAGAACCACCTAATAAAAGTTTTGCCAGTACAGCCGGTGAAAGCAGTGAACATGTAGATACCGACAGTGCTACTGACTCTGTAGAAAAGCATATGCTGGCCGGGGACAGTCAAACGTCAAAACCAGATGGTGAGTGCCATTCTATGTGCTTCTTCCTTAGACATCTAAAGGGAGGTTTTTATTATATGTGGTTTTCTAAAGTTGAGCTAACTATGAATTTTTGTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009987 GO:0010494 GO:0010603 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0032991 GO:0033043 GO:0034063 GO:0034622 GO:0035770 GO:0036464 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051128 GO:0065003 GO:0065007 GO:0070925 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1902115 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LsmAD PAM2 SM-ATX

Protein Analysis

210

Amino Acids

23.56

Weight (kDa)

4.49

Isoelectric Point (pI)

54.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LsmAD	PF06741	2 - 50	2.1e-12	LsmAD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54170 AT3G14010 AT3G14010 AT3G14010 AT3G14010 AT3G14010
fragaria_vesca	FvH4_6g34380 FvH4_6g34380 FvH4_6g34380 FvH4_6g34380 FvH4_6g34380 FvH4_6g34380 FvH4_6g34380
malus_domestica	MD09G1186100.v1.1 MD17G1171000.v1.1
prunus_persica	Prupe.7G067500_v2.0.a1 Prupe.7G067500_v2.0.a1 Prupe.7G067500_v2.0.a1
pyrus_communis	pycom09g10330 pycom12419g00200 pycom12419g00210
rosa_chinensis	RchiOBHm_Chr2g0110201 RchiOBHm_Chr2g0144721
rosa_laevigata	RLG00000020103
rosa_multiflora	Rmu_co8157946.1_g000001 Rmu_sc0013504.1_g000008 Rmu_sc0020351.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101040 Rroxscaffold_3G00222660 Rroxscaffold_7G00205460
rosa_rugosa	Rorug02G0389100 Rorug02G0389100 Rorug02G0389200 Rorug02G0389300
rosa_samantha	Rh2AG440900 Rh2BG451300 Rh2CG220200 Rh2CG428200 Rh2DG461300 Rh3DG266300
rosa_wichuraiana	Rw2G021150 Rw2G036070 Rw7G020140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	298
AclWI	GGATC	2 cut(s)	72, 382
AcoI	YGGCCR	1 cut(s)	501
AcsI	RAATTY	2 cut(s)	106, 619
AfaI	GTAC	1 cut(s)	433
AflIII	ACRYGT	1 cut(s)	454
AgsI	TTSAA	2 cut(s)	258, 306
AjnI	CCWGG	2 cut(s)	60, 235
AluBI	AGCT	4 cut(s)	23, 309, 397, 610
AluI	AGCT	4 cut(s)	23, 309, 397, 610
Alw26I	GTCTC	2 cut(s)	119, 212
AlwI	GGATC	2 cut(s)	72, 382
AlwNI	CAGNNNCTG	1 cut(s)	67
AoxI	GGCC	1 cut(s)	501
ApeKI	GCWGC	3 cut(s)	74, 94, 394
ApoI	RAATTY	2 cut(s)	106, 619
AspS9I	GGNCC	1 cut(s)	267
AsuC2I	CCSGG	1 cut(s)	505
AsuHPI	GGTGA	4 cut(s)	62, 164, 452, 545
AvaII	GGWCC	1 cut(s)	267
BanI	GGYRCC	1 cut(s)	298
BbvI	GCAGC	3 cut(s)	86, 106, 406
BccI	CCATC	1 cut(s)	524
BceAI	ACGGC	1 cut(s)	82
BciT130I	CCWGG	2 cut(s)	62, 237
BciVI	GTATCC	2 cut(s)	49, 167
BcnI	CCSGG	1 cut(s)	505
BcoDI	GTCTC	2 cut(s)	119, 212
BfaI	CTAG	1 cut(s)	390
BfmI	CTRYAG	1 cut(s)	483
BfuI	GTATCC	2 cut(s)	49, 167
BisI	GCNGC	3 cut(s)	75, 95, 395
BlsI	GCNGC	3 cut(s)	76, 96, 396
Bme1390I	CCNGG	3 cut(s)	62, 237, 505
Bme18I	GGWCC	1 cut(s)	267
BmgT120I	GGNCC	1 cut(s)	267
BmiI	GGNNCC	1 cut(s)	300
BmrFI	CCNGG	3 cut(s)	62, 237, 505
BmsI	GCATC	1 cut(s)	410
BpuMI	CCSGG	1 cut(s)	505
Bsa29I	ATCGAT	1 cut(s)	261
BsaAI	YACGTR	1 cut(s)	209
BsaI	GGTCTC	2 cut(s)	119, 212
BsaJI	CCNNGG	3 cut(s)	60, 286, 504
BsaXI	ACNNNNNCTCC	2 cut(s)	282, 312
Bse118I	RCCGGY	1 cut(s)	437
Bse1I	ACTGG	2 cut(s)	270, 429
BseBI	CCWGG	2 cut(s)	62, 237
BseCI	ATCGAT	1 cut(s)	261
BseDI	CCNNGG	3 cut(s)	60, 286, 504
BseMII	CTCAG	2 cut(s)	207, 234
BseNI	ACTGG	2 cut(s)	270, 429
BseRI	GAGGAG	2 cut(s)	127, 137
BseXI	GCAGC	3 cut(s)	86, 106, 406
BshFI	GGCC	1 cut(s)	503
BshNI	GGYRCC	1 cut(s)	298
BshVI	ATCGAT	1 cut(s)	261
BsiSI	CCGG	2 cut(s)	438, 504
BslFI	GGGAC	1 cut(s)	521
BsmAI	GTCTC	2 cut(s)	119, 212
BsmFI	GGGAC	1 cut(s)	521
BsnI	GGCC	1 cut(s)	503
Bso31I	GGTCTC	2 cut(s)	119, 212
Bsp143I	GATC	2 cut(s)	64, 374
Bsp19I	CCATGG	1 cut(s)	286
BspANI	GGCC	1 cut(s)	503
BspCNI	CTCAG	2 cut(s)	208, 235
BspDI	ATCGAT	1 cut(s)	261
BspLI	GGNNCC	1 cut(s)	300
BspPI	GGATC	2 cut(s)	72, 382
BspQI	GCTCTTC	1 cut(s)	316
BspT107I	GGYRCC	1 cut(s)	298
BspTNI	GGTCTC	2 cut(s)	119, 212
BsrFI	RCCGGY	1 cut(s)	437
BsrI	ACTGG	2 cut(s)	270, 429
BssAI	RCCGGY	1 cut(s)	437
BssECI	CCNNGG	3 cut(s)	60, 286, 504
BssMI	GATC	2 cut(s)	64, 374
BssT1I	CCWWGG	1 cut(s)	286
Bst2UI	CCWGG	2 cut(s)	62, 237
Bst4CI	ACNGT	2 cut(s)	470, 512
Bst6I	CTCTTC	1 cut(s)	316
BstBAI	YACGTR	1 cut(s)	209
BstC8I	GCNNGC	4 cut(s)	72, 92, 399, 501
BstDEI	CTNAG	3 cut(s)	216, 243, 560
BstDSI	CCRYGG	1 cut(s)	286
BstKTI	GATC	2 cut(s)	67, 377
BstMAI	GTCTC	2 cut(s)	119, 212
BstMBI	GATC	2 cut(s)	64, 374
BstMWI	GCNNNNNNNGC	1 cut(s)	434
BstNI	CCWGG	2 cut(s)	62, 237
BstNSI	RCATGY	3 cut(s)	74, 94, 458
BstSCI	CCNGG	3 cut(s)	60, 235, 503
BstSFI	CTRYAG	1 cut(s)	483
BstV1I	GCAGC	3 cut(s)	86, 106, 406
BstX2I	RGATCY	2 cut(s)	64, 374
BstYI	RGATCY	2 cut(s)	64, 374
Bsu15I	ATCGAT	1 cut(s)	261
BsuI	GTATCC	2 cut(s)	49, 167
BsuRI	GGCC	1 cut(s)	503
BsuTUI	ATCGAT	1 cut(s)	261
BtgI	CCRYGG	1 cut(s)	286
BtsI	GCAGTG	1 cut(s)	454
BtsIMutI	CAGTG	3 cut(s)	277, 454, 475
Cac8I	GCNNGC	4 cut(s)	72, 92, 399, 501
CaiI	CAGNNNCTG	1 cut(s)	67
Cfr10I	RCCGGY	1 cut(s)	437
Cfr13I	GGNCC	1 cut(s)	267
ClaI	ATCGAT	1 cut(s)	261
Csp6I	GTAC	1 cut(s)	432
CviAII	CATG	5 cut(s)	71, 91, 287, 386, 455
CviJI	RGCY	7 cut(s)	23, 97, 309, 397, 437, 503, 610
CviKI_1	RGCY	7 cut(s)	23, 97, 309, 397, 437, 503, 610
CviQI	GTAC	1 cut(s)	432
DdeI	CTNAG	3 cut(s)	216, 243, 560
DpnI	GATC	2 cut(s)	66, 376
DpnII	GATC	2 cut(s)	64, 374
EaeI	YGGCCR	1 cut(s)	501
Eam1104I	CTCTTC	1 cut(s)	316
EarI	CTCTTC	1 cut(s)	316
Eco130I	CCWWGG	1 cut(s)	286
Eco31I	GGTCTC	2 cut(s)	119, 212
Eco47I	GGWCC	1 cut(s)	267
EcoRII	CCWGG	2 cut(s)	60, 235
EcoT14I	CCWWGG	1 cut(s)	286
ErhI	CCWWGG	1 cut(s)	286
FaeI	CATG	5 cut(s)	74, 94, 290, 389, 458
FalI	AAGNNNNNCTT	2 cut(s)	7, 39
FaqI	GGGAC	1 cut(s)	521
FatI	CATG	5 cut(s)	70, 90, 286, 385, 454
FauNDI	CATATG	1 cut(s)	495
Fnu4HI	GCNGC	3 cut(s)	75, 95, 395
Fsp4HI	GCNGC	3 cut(s)	75, 95, 395
FspBI	CTAG	1 cut(s)	390
GluI	GCNGC	3 cut(s)	75, 95, 395
HaeIII	GGCC	1 cut(s)	503
HapII	CCGG	2 cut(s)	438, 504
Hin1II	CATG	5 cut(s)	74, 94, 290, 389, 458
HindIII	AAGCTT	1 cut(s)	21
HinfI	GANTC	3 cut(s)	203, 341, 479
HpaII	CCGG	2 cut(s)	438, 504
HphI	GGTGA	4 cut(s)	62, 164, 452, 545
Hpy166II	GTNNAC	1 cut(s)	452
Hpy188I	TCNGA	3 cut(s)	244, 340, 406
Hpy188III	TCNNGA	1 cut(s)	372
Hpy8I	GTNNAC	1 cut(s)	452
HpyAV	CCTTC	1 cut(s)	312
HpyCH4III	ACNGT	2 cut(s)	470, 512
HpyCH4IV	ACGT	2 cut(s)	208, 518
HpyCH4V	TGCA	3 cut(s)	70, 74, 94
HpyF10VI	GCNNNNNNNGC	1 cut(s)	434
HpyF3I	CTNAG	3 cut(s)	216, 243, 560
HpySE526I	ACGT	2 cut(s)	208, 518
Hsp92II	CATG	5 cut(s)	74, 94, 290, 389, 458
Kzo9I	GATC	2 cut(s)	64, 374
LguI	GCTCTTC	1 cut(s)	316
Lsp1109I	GCAGC	3 cut(s)	86, 106, 406
LweI	GCATC	1 cut(s)	410
MaeI	CTAG	1 cut(s)	390
MaeII	ACGT	2 cut(s)	208, 518
MalI	GATC	2 cut(s)	66, 376
MboI	GATC	2 cut(s)	64, 374
MboII	GAAGA	3 cut(s)	194, 303, 547
MflI	RGATCY	2 cut(s)	64, 374
MluCI	AATT	3 cut(s)	42, 106, 619
MlyI	GAGTC	1 cut(s)	473
MseI	TTAA	1 cut(s)	631
MspA1I	CMGCKG	1 cut(s)	397
MspI	CCGG	2 cut(s)	438, 504
MspR9I	CCNGG	3 cut(s)	62, 237, 505
MvaI	CCWGG	2 cut(s)	62, 237
MwoI	GCNNNNNNNGC	1 cut(s)	434
NciI	CCSGG	1 cut(s)	505
NcoI	CCATGG	1 cut(s)	286
NdeI	CATATG	1 cut(s)	495
NdeII	GATC	2 cut(s)	64, 374
NlaIII	CATG	5 cut(s)	74, 94, 290, 389, 458
NlaIV	GGNNCC	1 cut(s)	300
NspI	RCATGY	3 cut(s)	74, 94, 458
PaeI	GCATGC	2 cut(s)	74, 94
PciI	ACATGT	1 cut(s)	454
PciSI	GCTCTTC	1 cut(s)	316
PfeI	GAWTC	2 cut(s)	203, 341
PkrI	GCNGC	3 cut(s)	76, 96, 396
PleI	GAGTC	1 cut(s)	473
PpsI	GAGTC	1 cut(s)	473
Ppu21I	YACGTR	1 cut(s)	209
PscI	ACATGT	1 cut(s)	454
Psp6I	CCWGG	2 cut(s)	60, 235
PspGI	CCWGG	2 cut(s)	60, 235
PspN4I	GGNNCC	1 cut(s)	300
PspPI	GGNCC	1 cut(s)	267
PstNI	CAGNNNCTG	1 cut(s)	67
PsuI	RGATCY	2 cut(s)	64, 374
PvuII	CAGCTG	1 cut(s)	397
RsaI	GTAC	1 cut(s)	433
RsaNI	GTAC	1 cut(s)	432
SapI	GCTCTTC	1 cut(s)	316
SaqAI	TTAA	1 cut(s)	631
SatI	GCNGC	3 cut(s)	75, 95, 395
Sau3AI	GATC	2 cut(s)	64, 374
Sau96I	GGNCC	1 cut(s)	267
SchI	GAGTC	1 cut(s)	473
ScrFI	CCNGG	3 cut(s)	62, 237, 505
SfaNI	GCATC	1 cut(s)	410
SfcI	CTRYAG	1 cut(s)	483
SinI	GGWCC	1 cut(s)	267
SphI	GCATGC	2 cut(s)	74, 94
Sse9I	AATT	3 cut(s)	42, 106, 619
SspMI	CTAG	1 cut(s)	390
StyD4I	CCNGG	3 cut(s)	60, 235, 503
StyI	CCWWGG	1 cut(s)	286
TaaI	ACNGT	2 cut(s)	470, 512
TaiI	ACGT	2 cut(s)	211, 521
TaqI	TCGA	1 cut(s)	261
TasI	AATT	3 cut(s)	42, 106, 619
TatI	WGTACW	1 cut(s)	431
TfiI	GAWTC	2 cut(s)	203, 341
Tru1I	TTAA	1 cut(s)	631
Tru9I	TTAA	1 cut(s)	631
TscAI	CASTG	3 cut(s)	277, 454, 475
TseI	GCWGC	3 cut(s)	74, 94, 394
TspDTI	ATGAA	4 cut(s)	117, 195, 303, 632
TspRI	CASTG	3 cut(s)	277, 454, 475
VpaK11BI	GGWCC	1 cut(s)	267
XapI	RAATTY	2 cut(s)	106, 619
XceI	RCATGY	3 cut(s)	74, 94, 458
XspI	CTAG	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.