Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8157946.1

Orthogroup ID

OG0002232

Physical Location & Seq

Genomic Coordinates Forward (+)

45 .. 658

Gene Structure 614 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8157946.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 418 bp

atgcaaccagctgtccattctaaatcatctgctaatggttttggtcgtcgaagaagtgaaagagaagggggtgctagggtcgagaataagtcgcagtcggggaaggcaaaccatagcaaatcaagcagcaaagctggtaactatgagagtccttcgcgtgatcgcgtagtatttttaactacatgtcttattggacatcatgtggaggttcaggtgaaaaatggatccatatacaccggaatatttcatgcaacgaatgctgataaagattttggaatcatattgaaaatggctcgcatgataaaggatggttccttacgagggcagaagtctatgtcagattcagttagcaaggctcctttaaagacattaattataccttccaaagaacttgtgcaagtgatagcaaaggtattgc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009987 GO:0010494 GO:0010603 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0032991 GO:0033043 GO:0034063 GO:0034622 GO:0035770 GO:0036464 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051128 GO:0065003 GO:0065007 GO:0070925 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1902115 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LsmAD PAM2 SM-ATX

Protein Analysis

139

Amino Acids

15.08

Weight (kDa)

10.21

Isoelectric Point (pI)

43.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54170 AT3G14010 AT3G14010 AT3G14010 AT3G14010 AT3G14010
fragaria_vesca	FvH4_6g34380 FvH4_6g34380 FvH4_6g34380 FvH4_6g34380 FvH4_6g34380 FvH4_6g34380 FvH4_6g34380
malus_domestica	MD09G1186100.v1.1 MD17G1171000.v1.1
prunus_persica	Prupe.7G067500_v2.0.a1 Prupe.7G067500_v2.0.a1 Prupe.7G067500_v2.0.a1
pyrus_communis	pycom09g10330 pycom12419g00200 pycom12419g00210
rosa_chinensis	RchiOBHm_Chr2g0110201 RchiOBHm_Chr2g0144721
rosa_laevigata	RLG00000020103
rosa_multiflora	Rmu_co8157946.1_g000001 Rmu_sc0013504.1_g000008 Rmu_sc0020351.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101040 Rroxscaffold_3G00222660 Rroxscaffold_7G00205460
rosa_rugosa	Rorug02G0389100 Rorug02G0389100 Rorug02G0389200 Rorug02G0389300
rosa_samantha	Rh2AG440900 Rh2BG451300 Rh2CG220200 Rh2CG428200 Rh2DG461300 Rh3DG266300
rosa_wichuraiana	Rw2G021150 Rw2G036070 Rw7G020140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	157, 165
AclWI	GGATC	2 cut(s)	219, 232
AfiI	CCNNNNNNNGG	1 cut(s)	321
AflIII	ACRYGT	1 cut(s)	182
AgsI	TTSAA	1 cut(s)	286
AluBI	AGCT	2 cut(s)	11, 134
AluI	AGCT	2 cut(s)	11, 134
AlwI	GGATC	2 cut(s)	219, 232
ApeKI	GCWGC	1 cut(s)	126
AseI	ATTAAT	1 cut(s)	371
AsuHPI	GGTGA	1 cut(s)	226
BamHI	GGATCC	1 cut(s)	224
BbvI	GCAGC	1 cut(s)	138
BccI	CCATC	1 cut(s)	302
BfaI	CTAG	1 cut(s)	75
BisI	GCNGC	1 cut(s)	127
BlsI	GCNGC	1 cut(s)	128
BmiI	GGNNCC	3 cut(s)	226, 313, 357
BsaWI	WCCGGW	1 cut(s)	236
Bsc4I	CCNNNNNNNGG	1 cut(s)	321
BseGI	GGATG	1 cut(s)	313
BseLI	CCNNNNNNNGG	1 cut(s)	321
BseXI	GCAGC	1 cut(s)	138
Bsh1236I	CGCG	2 cut(s)	157, 165
BsiSI	CCGG	1 cut(s)	237
BslI	CCNNNNNNNGG	1 cut(s)	321
BsmI	GAATGC	1 cut(s)	262
Bsp143I	GATC	2 cut(s)	160, 224
BspFNI	CGCG	2 cut(s)	157, 165
BspLI	GGNNCC	3 cut(s)	226, 313, 357
BspPI	GGATC	2 cut(s)	219, 232
BssMI	GATC	2 cut(s)	160, 224
BstAPI	GCANNNNNTGC	1 cut(s)	257
BstC8I	GCNNGC	1 cut(s)	295
BstF5I	GGATG	1 cut(s)	313
BstFNI	CGCG	2 cut(s)	157, 165
BstKTI	GATC	2 cut(s)	163, 227
BstMBI	GATC	2 cut(s)	160, 224
BstMWI	GCNNNNNNNGC	2 cut(s)	123, 257
BstNSI	RCATGY	1 cut(s)	186
BstUI	CGCG	2 cut(s)	157, 165
BstV1I	GCAGC	1 cut(s)	138
BstX2I	RGATCY	1 cut(s)	224
BstYI	RGATCY	1 cut(s)	224
BtsCI	GGATG	1 cut(s)	313
Cac8I	GCNNGC	1 cut(s)	295
CviAII	CATG	4 cut(s)	183, 200, 248, 298
CviJI	RGCY	4 cut(s)	11, 134, 293, 356
CviKI_1	RGCY	4 cut(s)	11, 134, 293, 356
DpnI	GATC	2 cut(s)	162, 226
DpnII	GATC	2 cut(s)	160, 224
DraI	TTTAAA	1 cut(s)	363
FaeI	CATG	4 cut(s)	186, 203, 251, 301
FatI	CATG	4 cut(s)	182, 199, 247, 297
Fnu4HI	GCNGC	1 cut(s)	127
FokI	GGATG	1 cut(s)	320
Fsp4HI	GCNGC	1 cut(s)	127
FspBI	CTAG	1 cut(s)	75
GluI	GCNGC	1 cut(s)	127
HapII	CCGG	1 cut(s)	237
Hin1II	CATG	4 cut(s)	186, 203, 251, 301
HinfI	GANTC	3 cut(s)	148, 276, 341
HpaII	CCGG	1 cut(s)	237
HphI	GGTGA	1 cut(s)	226
Hpy188I	TCNGA	1 cut(s)	340
Hpy188III	TCNNGA	1 cut(s)	82
Hpy99I	CGWCG	1 cut(s)	51
HpyAV	CCTTC	4 cut(s)	59, 97, 162, 390
HpyCH4V	TGCA	3 cut(s)	4, 251, 397
HpyF10VI	GCNNNNNNNGC	2 cut(s)	123, 257
Hsp92II	CATG	4 cut(s)	186, 203, 251, 301
Kzo9I	GATC	2 cut(s)	160, 224
LmnI	GCTCC	1 cut(s)	361
LpnPI	CCDG	4 cut(s)	21, 120, 197, 250
Lsp1109I	GCAGC	1 cut(s)	138
MaeI	CTAG	1 cut(s)	75
MaeIII	GTNAC	1 cut(s)	137
MalI	GATC	2 cut(s)	162, 226
MboI	GATC	2 cut(s)	160, 224
MboII	GAAGA	1 cut(s)	63
MflI	RGATCY	1 cut(s)	224
MluCI	AATT	1 cut(s)	372
MlyI	GAGTC	1 cut(s)	157
MnlI	CCTC	2 cut(s)	199, 314
MseI	TTAA	3 cut(s)	176, 362, 371
MspA1I	CMGCKG	1 cut(s)	11
MspI	CCGG	1 cut(s)	237
Mva1269I	GAATGC	1 cut(s)	262
MvnI	CGCG	2 cut(s)	157, 165
MwoI	GCNNNNNNNGC	2 cut(s)	123, 257
NdeII	GATC	2 cut(s)	160, 224
NlaIII	CATG	4 cut(s)	186, 203, 251, 301
NlaIV	GGNNCC	3 cut(s)	226, 313, 357
NspI	RCATGY	1 cut(s)	186
PciI	ACATGT	1 cut(s)	182
PctI	GAATGC	1 cut(s)	262
PfeI	GAWTC	2 cut(s)	276, 341
PkrI	GCNGC	1 cut(s)	128
PleI	GAGTC	1 cut(s)	156
PpsI	GAGTC	1 cut(s)	156
PscI	ACATGT	1 cut(s)	182
PshBI	ATTAAT	1 cut(s)	371
PspN4I	GGNNCC	3 cut(s)	226, 313, 357
PsuI	RGATCY	1 cut(s)	224
PvuII	CAGCTG	1 cut(s)	11
SaqAI	TTAA	3 cut(s)	176, 362, 371
SatI	GCNGC	1 cut(s)	127
Sau3AI	GATC	2 cut(s)	160, 224
SchI	GAGTC	1 cut(s)	157
SetI	ASST	6 cut(s)	13, 136, 210, 216, 382, 414
Sse9I	AATT	1 cut(s)	372
SspI	AATATT	1 cut(s)	243
SspMI	CTAG	1 cut(s)	75
TaqI	TCGA	2 cut(s)	49, 81
TasI	AATT	1 cut(s)	372
TfiI	GAWTC	2 cut(s)	276, 341
Tru1I	TTAA	3 cut(s)	176, 362, 371
Tru9I	TTAA	3 cut(s)	176, 362, 371
TseI	GCWGC	1 cut(s)	126
TspDTI	ATGAA	1 cut(s)	236
VspI	ATTAAT	1 cut(s)	371
XceI	RCATGY	1 cut(s)	186
XspI	CTAG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.