Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020351.1

Orthogroup ID

OG0002232

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 840

Gene Structure 840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020351.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 177 bp

atgagagagttggaaagggaagctttacgaatagcaagagaaattgagggtgaggatacccaggatctgcatgcagcagaggaaagaggcatgcagccgtatgaaaattttgatattgatgaggagaccagatactcctctgtttatcataacgaagcttcaatttcatttcctgtg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009987 GO:0010494 GO:0010603 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0032991 GO:0033043 GO:0034063 GO:0034622 GO:0035770 GO:0036464 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051128 GO:0065003 GO:0065007 GO:0070925 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1902115 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LsmAD PAM2 SM-ATX

Protein Analysis

59

Amino Acids

6.97

Weight (kDa)

4.36

Isoelectric Point (pI)

47.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54170 AT3G14010 AT3G14010 AT3G14010 AT3G14010 AT3G14010
fragaria_vesca	FvH4_6g34380 FvH4_6g34380 FvH4_6g34380 FvH4_6g34380 FvH4_6g34380 FvH4_6g34380 FvH4_6g34380
malus_domestica	MD09G1186100.v1.1 MD17G1171000.v1.1
prunus_persica	Prupe.7G067500_v2.0.a1 Prupe.7G067500_v2.0.a1 Prupe.7G067500_v2.0.a1
pyrus_communis	pycom09g10330 pycom12419g00200 pycom12419g00210
rosa_chinensis	RchiOBHm_Chr2g0110201 RchiOBHm_Chr2g0144721
rosa_laevigata	RLG00000020103
rosa_multiflora	Rmu_co8157946.1_g000001 Rmu_sc0013504.1_g000008 Rmu_sc0020351.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101040 Rroxscaffold_3G00222660 Rroxscaffold_7G00205460
rosa_rugosa	Rorug02G0389100 Rorug02G0389100 Rorug02G0389200 Rorug02G0389300
rosa_samantha	Rh2AG440900 Rh2BG451300 Rh2CG220200 Rh2CG428200 Rh2DG461300 Rh3DG266300
rosa_wichuraiana	Rw2G021150 Rw2G036070 Rw7G020140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	72
AcsI	RAATTY	1 cut(s)	106
AgsI	TTSAA	1 cut(s)	162
AjnI	CCWGG	1 cut(s)	60
AluBI	AGCT	2 cut(s)	23, 158
AluI	AGCT	2 cut(s)	23, 158
Alw26I	GTCTC	1 cut(s)	119
AlwI	GGATC	1 cut(s)	72
AlwNI	CAGNNNCTG	1 cut(s)	67
ApeKI	GCWGC	2 cut(s)	74, 94
ApoI	RAATTY	1 cut(s)	106
AsuHPI	GGTGA	1 cut(s)	62
BbvI	GCAGC	2 cut(s)	86, 106
BceAI	ACGGC	1 cut(s)	82
BciT130I	CCWGG	1 cut(s)	62
BciVI	GTATCC	1 cut(s)	49
BcoDI	GTCTC	1 cut(s)	119
BfuI	GTATCC	1 cut(s)	49
BisI	GCNGC	2 cut(s)	75, 95
BlsI	GCNGC	2 cut(s)	76, 96
Bme1390I	CCNGG	1 cut(s)	62
BmrFI	CCNGG	1 cut(s)	62
BsaI	GGTCTC	1 cut(s)	119
BsaJI	CCNNGG	1 cut(s)	60
BseBI	CCWGG	1 cut(s)	62
BseDI	CCNNGG	1 cut(s)	60
BseRI	GAGGAG	2 cut(s)	127, 137
BseXI	GCAGC	2 cut(s)	86, 106
BsmAI	GTCTC	1 cut(s)	119
Bso31I	GGTCTC	1 cut(s)	119
Bsp143I	GATC	1 cut(s)	64
BspPI	GGATC	1 cut(s)	72
BspTNI	GGTCTC	1 cut(s)	119
BssECI	CCNNGG	1 cut(s)	60
BssMI	GATC	1 cut(s)	64
Bst2UI	CCWGG	1 cut(s)	62
BstC8I	GCNNGC	2 cut(s)	72, 92
BstKTI	GATC	1 cut(s)	67
BstMAI	GTCTC	1 cut(s)	119
BstMBI	GATC	1 cut(s)	64
BstNI	CCWGG	1 cut(s)	62
BstNSI	RCATGY	2 cut(s)	74, 94
BstSCI	CCNGG	1 cut(s)	60
BstV1I	GCAGC	2 cut(s)	86, 106
BstX2I	RGATCY	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	64
BsuI	GTATCC	1 cut(s)	49
Cac8I	GCNNGC	2 cut(s)	72, 92
CaiI	CAGNNNCTG	1 cut(s)	67
CviAII	CATG	2 cut(s)	71, 91
CviJI	RGCY	3 cut(s)	23, 97, 158
CviKI_1	RGCY	3 cut(s)	23, 97, 158
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
Eco31I	GGTCTC	1 cut(s)	119
EcoRII	CCWGG	1 cut(s)	60
FaeI	CATG	2 cut(s)	74, 94
FaiI	YATR	4 cut(s)	72, 92, 102, 150
FalI	AAGNNNNNCTT	2 cut(s)	7, 39
FatI	CATG	2 cut(s)	70, 90
Fnu4HI	GCNGC	2 cut(s)	75, 95
Fsp4HI	GCNGC	2 cut(s)	75, 95
GluI	GCNGC	2 cut(s)	75, 95
Hin1II	CATG	2 cut(s)	74, 94
HindIII	AAGCTT	2 cut(s)	21, 156
HphI	GGTGA	1 cut(s)	62
HpyCH4V	TGCA	3 cut(s)	70, 74, 94
Hsp92II	CATG	2 cut(s)	74, 94
Kzo9I	GATC	1 cut(s)	64
LpnPI	CCDG	3 cut(s)	47, 74, 142
Lsp1109I	GCAGC	2 cut(s)	86, 106
MalI	GATC	1 cut(s)	66
MboI	GATC	1 cut(s)	64
MflI	RGATCY	1 cut(s)	64
MluCI	AATT	3 cut(s)	42, 106, 162
MnlI	CCTC	6 cut(s)	40, 46, 73, 80, 115, 148
MspR9I	CCNGG	1 cut(s)	62
MvaI	CCWGG	1 cut(s)	62
NdeII	GATC	1 cut(s)	64
NlaIII	CATG	2 cut(s)	74, 94
NspI	RCATGY	2 cut(s)	74, 94
PaeI	GCATGC	2 cut(s)	74, 94
PkrI	GCNGC	2 cut(s)	76, 96
Psp6I	CCWGG	1 cut(s)	60
PspGI	CCWGG	1 cut(s)	60
PstNI	CAGNNNCTG	1 cut(s)	67
PsuI	RGATCY	1 cut(s)	64
SatI	GCNGC	2 cut(s)	75, 95
Sau3AI	GATC	1 cut(s)	64
ScrFI	CCNGG	1 cut(s)	62
SetI	ASST	2 cut(s)	25, 160
SgeI	CNNG	6 cut(s)	48, 73, 74, 83, 103, 141
SphI	GCATGC	2 cut(s)	74, 94
Sse9I	AATT	3 cut(s)	42, 106, 162
StyD4I	CCNGG	1 cut(s)	60
TasI	AATT	3 cut(s)	42, 106, 162
TseI	GCWGC	2 cut(s)	74, 94
TspDTI	ATGAA	2 cut(s)	117, 156
XapI	RAATTY	1 cut(s)	106
XceI	RCATGY	2 cut(s)	74, 94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.