Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013504.1

Orthogroup ID

OG0002232

Physical Location & Seq

Genomic Coordinates Forward (+)

34177 .. 35313

Gene Structure 1137 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013504.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

atgctagattcctccatatcacaatctcgccgtggtgagatggagagagagctggagccgtggatccctgatgaagatgatccacgtcctgagttggaaaatatatttgatggacattggaataggaactgggatcaatttgaaacaaatgaagcattatttggggtaaaaagctcatttgatgaggaactttacacaacaaagcttgagaaaggtcctaaaatgagagagttggaaagggaagctttacgaatagcaagagaaattgagggtgaggatacccaggatctgcatgcagcagaggaaagaggcatgcagccgtatgaaaattttgatattgatgaggagaccagatactcctctgtttatcataatgaagcttcaatttcatttcctgtggttgcttgtaaatcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009987 GO:0010494 GO:0010603 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0032991 GO:0033043 GO:0034063 GO:0034622 GO:0035770 GO:0036464 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051128 GO:0065003 GO:0065007 GO:0070925 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1902115 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LsmAD PAM2 SM-ATX

Protein Analysis

138

Amino Acids

16.26

Weight (kDa)

4.41

Isoelectric Point (pI)

52.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54170 AT3G14010 AT3G14010 AT3G14010 AT3G14010 AT3G14010
fragaria_vesca	FvH4_6g34380 FvH4_6g34380 FvH4_6g34380 FvH4_6g34380 FvH4_6g34380 FvH4_6g34380 FvH4_6g34380
malus_domestica	MD09G1186100.v1.1 MD17G1171000.v1.1
prunus_persica	Prupe.7G067500_v2.0.a1 Prupe.7G067500_v2.0.a1 Prupe.7G067500_v2.0.a1
pyrus_communis	pycom09g10330 pycom12419g00200 pycom12419g00210
rosa_chinensis	RchiOBHm_Chr2g0110201 RchiOBHm_Chr2g0144721
rosa_laevigata	RLG00000020103
rosa_multiflora	Rmu_co8157946.1_g000001 Rmu_sc0013504.1_g000008 Rmu_sc0020351.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101040 Rroxscaffold_3G00222660 Rroxscaffold_7G00205460
rosa_rugosa	Rorug02G0389100 Rorug02G0389100 Rorug02G0389200 Rorug02G0389300
rosa_samantha	Rh2AG440900 Rh2BG451300 Rh2CG220200 Rh2CG428200 Rh2DG461300 Rh3DG266300
rosa_wichuraiana	Rw2G021150 Rw2G036070 Rw7G020140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	5 cut(s)	58, 71, 74, 141, 294
AcsI	RAATTY	1 cut(s)	328
AgsI	TTSAA	2 cut(s)	143, 384
AjiI	CACGTC	1 cut(s)	86
AjnI	CCWGG	1 cut(s)	282
AjuI	GAANNNNNNNTTGG	2 cut(s)	144, 176
AluBI	AGCT	5 cut(s)	52, 174, 205, 245, 380
AluI	AGCT	5 cut(s)	52, 174, 205, 245, 380
Alw26I	GTCTC	1 cut(s)	341
AlwI	GGATC	5 cut(s)	58, 71, 74, 141, 294
AlwNI	CAGNNNCTG	1 cut(s)	289
ApeKI	GCWGC	2 cut(s)	296, 316
ApoI	RAATTY	1 cut(s)	328
AspS9I	GGNCC	1 cut(s)	215
AsuHPI	GGTGA	2 cut(s)	47, 284
AvaII	GGWCC	1 cut(s)	215
BamHI	GGATCC	1 cut(s)	63
BbvI	GCAGC	2 cut(s)	308, 328
BccI	CCATC	2 cut(s)	34, 104
BceAI	ACGGC	3 cut(s)	15, 43, 304
BciT130I	CCWGG	1 cut(s)	284
BciVI	GTATCC	1 cut(s)	271
BcoDI	GTCTC	1 cut(s)	341
BfaI	CTAG	1 cut(s)	5
BfuI	GTATCC	1 cut(s)	271
BisI	GCNGC	2 cut(s)	297, 317
BlsI	GCNGC	2 cut(s)	298, 318
Bme1390I	CCNGG	1 cut(s)	284
Bme18I	GGWCC	1 cut(s)	215
BmgBI	CACGTC	1 cut(s)	86
BmgT120I	GGNCC	1 cut(s)	215
BmiI	GGNNCC	2 cut(s)	57, 65
BmrFI	CCNGG	1 cut(s)	284
BmrI	ACTGGG	1 cut(s)	139
BmuI	ACTGGG	1 cut(s)	139
BpmI	CTGGAG	1 cut(s)	74
BpuEI	CTTGAG	1 cut(s)	227
BsaI	GGTCTC	1 cut(s)	341
BsaJI	CCNNGG	3 cut(s)	31, 59, 282
Bse1I	ACTGG	1 cut(s)	134
BseBI	CCWGG	1 cut(s)	284
BseDI	CCNNGG	3 cut(s)	31, 59, 282
BseMII	CTCAG	1 cut(s)	81
BseNI	ACTGG	1 cut(s)	134
BseRI	GAGGAG	2 cut(s)	349, 359
BseXI	GCAGC	2 cut(s)	308, 328
BsmAI	GTCTC	1 cut(s)	341
Bso31I	GGTCTC	1 cut(s)	341
Bsp143I	GATC	4 cut(s)	63, 79, 133, 286
BspCNI	CTCAG	1 cut(s)	82
BspLI	GGNNCC	2 cut(s)	57, 65
BspPI	GGATC	5 cut(s)	58, 71, 74, 141, 294
BspTNI	GGTCTC	1 cut(s)	341
BsrI	ACTGG	1 cut(s)	134
BssECI	CCNNGG	3 cut(s)	31, 59, 282
BssMI	GATC	4 cut(s)	63, 79, 133, 286
Bst2UI	CCWGG	1 cut(s)	284
BstC8I	GCNNGC	2 cut(s)	294, 314
BstDEI	CTNAG	1 cut(s)	90
BstDSI	CCRYGG	2 cut(s)	31, 59
BstKTI	GATC	4 cut(s)	66, 82, 136, 289
BstMAI	GTCTC	1 cut(s)	341
BstMBI	GATC	4 cut(s)	63, 79, 133, 286
BstNI	CCWGG	1 cut(s)	284
BstNSI	RCATGY	2 cut(s)	296, 316
BstSCI	CCNGG	1 cut(s)	282
BstV1I	GCAGC	2 cut(s)	308, 328
BstX2I	RGATCY	2 cut(s)	63, 286
BstYI	RGATCY	2 cut(s)	63, 286
BsuI	GTATCC	1 cut(s)	271
BtgI	CCRYGG	2 cut(s)	31, 59
BtrI	CACGTC	1 cut(s)	86
Cac8I	GCNNGC	2 cut(s)	294, 314
CaiI	CAGNNNCTG	1 cut(s)	289
Cfr13I	GGNCC	1 cut(s)	215
CviAII	CATG	2 cut(s)	293, 313
CviJI	RGCY	7 cut(s)	52, 58, 174, 205, 245, 319, 380
CviKI_1	RGCY	7 cut(s)	52, 58, 174, 205, 245, 319, 380
DdeI	CTNAG	1 cut(s)	90
DpnI	GATC	4 cut(s)	65, 81, 135, 288
DpnII	GATC	4 cut(s)	63, 79, 133, 286
Eco31I	GGTCTC	1 cut(s)	341
Eco47I	GGWCC	1 cut(s)	215
EcoO109I	RGGNCCY	1 cut(s)	215
EcoRII	CCWGG	1 cut(s)	282
FaeI	CATG	2 cut(s)	296, 316
FaiI	YATR	6 cut(s)	17, 104, 294, 314, 324, 372
FalI	AAGNNNNNCTT	2 cut(s)	229, 261
FatI	CATG	2 cut(s)	292, 312
Fnu4HI	GCNGC	2 cut(s)	297, 317
Fsp4HI	GCNGC	2 cut(s)	297, 317
FspBI	CTAG	1 cut(s)	5
GluI	GCNGC	2 cut(s)	297, 317
GsuI	CTGGAG	1 cut(s)	74
Hin1II	CATG	2 cut(s)	296, 316
HindIII	AAGCTT	3 cut(s)	203, 243, 378
HinfI	GANTC	1 cut(s)	8
HphI	GGTGA	2 cut(s)	47, 284
Hpy188III	TCNNGA	2 cut(s)	89, 414
HpyCH4IV	ACGT	1 cut(s)	85
HpyCH4V	TGCA	3 cut(s)	292, 296, 316
HpyF3I	CTNAG	1 cut(s)	90
HpySE526I	ACGT	1 cut(s)	85
Hsp92II	CATG	2 cut(s)	296, 316
Kzo9I	GATC	4 cut(s)	63, 79, 133, 286
LmnI	GCTCC	1 cut(s)	55
LpnPI	CCDG	8 cut(s)	38, 81, 102, 115, 269, 296, 364, 408
Lsp1109I	GCAGC	2 cut(s)	308, 328
MaeI	CTAG	1 cut(s)	5
MaeII	ACGT	1 cut(s)	85
MalI	GATC	4 cut(s)	65, 81, 135, 288
MboI	GATC	4 cut(s)	63, 79, 133, 286
MboII	GAAGA	1 cut(s)	86
MflI	RGATCY	2 cut(s)	63, 286
MluCI	AATT	4 cut(s)	137, 264, 328, 384
MmeI	TCCRAC	2 cut(s)	75, 213
MnlI	CCTC	8 cut(s)	22, 178, 262, 268, 295, 302, 337, 370
MspR9I	CCNGG	1 cut(s)	284
MvaI	CCWGG	1 cut(s)	284
NdeII	GATC	4 cut(s)	63, 79, 133, 286
NlaIII	CATG	2 cut(s)	296, 316
NlaIV	GGNNCC	2 cut(s)	57, 65
NspI	RCATGY	2 cut(s)	296, 316
PaeI	GCATGC	2 cut(s)	296, 316
PfeI	GAWTC	1 cut(s)	8
PkrI	GCNGC	2 cut(s)	298, 318
PpuMI	RGGWCCY	1 cut(s)	215
Psp5II	RGGWCCY	1 cut(s)	215
Psp6I	CCWGG	1 cut(s)	282
PspGI	CCWGG	1 cut(s)	282
PspN4I	GGNNCC	2 cut(s)	57, 65
PspPI	GGNCC	1 cut(s)	215
PspPPI	RGGWCCY	1 cut(s)	215
PstNI	CAGNNNCTG	1 cut(s)	289
PsuI	RGATCY	2 cut(s)	63, 286
SatI	GCNGC	2 cut(s)	297, 317
Sau3AI	GATC	4 cut(s)	63, 79, 133, 286
Sau96I	GGNCC	1 cut(s)	215
ScrFI	CCNGG	1 cut(s)	284
SetI	ASST	7 cut(s)	54, 88, 176, 207, 217, 247, 382
SinI	GGWCC	1 cut(s)	215
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
SphI	GCATGC	2 cut(s)	296, 316
Sse9I	AATT	4 cut(s)	137, 264, 328, 384
SspMI	CTAG	1 cut(s)	5
StyD4I	CCNGG	1 cut(s)	282
TaiI	ACGT	1 cut(s)	88
TasI	AATT	4 cut(s)	137, 264, 328, 384
TfiI	GAWTC	1 cut(s)	8
TseI	GCWGC	2 cut(s)	296, 316
TspDTI	ATGAA	5 cut(s)	87, 165, 339, 378, 390
VpaK11BI	GGWCC	1 cut(s)	215
XapI	RAATTY	1 cut(s)	328
XceI	RCATGY	2 cut(s)	296, 316
XspI	CTAG	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.