Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0002232

Physical Location & Seq

Genomic Coordinates Forward (+)

22718483 .. 22725941

Gene Structure 7459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G020140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGATCCATGCTACAGTCATCAGGAACTGGGATCAATTTGAAACAAATGAAGCATTATTTGGGGTAAAAAGCACATTTGATGAGGAACTTTACACAACAAAGCTTGAGAAAGGTCCTAAAATGAGAGAGTTGGAAAGGGAAGCTTTACGAATAGCAAGAGAAATTGAGGCTGAGGATACCCAGGATCTGCATGCAGCAGAGGAAAGAGGCATGCAGCCGTATGAAAATTTTGATATTGATGAGGAGACCAGATACTCCTCTGTTTATCGGGGTGAGGTAGTTGATGATAGTGGATACGATGAAGATGAGGATATTTTATTGGATTCACGTAATACTGAGACCTTTGGAGGTTCTCCTGGTTCTGAGCAAAAGAGTTCAATCGATTGGACCAGTGGAAAAGGCAACCATGGAGTTCAGGTGCCTTCAAGCTCTTCATCTGTGGATTACACACACTATTCTGAATCAAATGTCGCCCCAGAGTTATATCGTTCTGGATCTTATGACCATGCTAGGCAGCTGGCATCAGAACCACCTAATAAAAGTTTTGCCAGTACAGCCGGTGAAAGCAGTGAACATGTAGATACCGACAGTGCTACTGACTCTGTAGAAAAGCATATGCTGGCCGGGGACAGTCAAACGTCAAAACCAGATGACATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009987 GO:0010494 GO:0010603 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0032991 GO:0033043 GO:0034063 GO:0034622 GO:0035770 GO:0036464 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051128 GO:0065003 GO:0065007 GO:0070925 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1902115 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LsmAD PAM2 SM-ATX

Protein Analysis

219

Amino Acids

24.46

Weight (kDa)

4.39

Isoelectric Point (pI)

47.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LsmAD	PF06741	20 - 90	4.6e-25	LsmAD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54170 AT3G14010 AT3G14010 AT3G14010 AT3G14010 AT3G14010
fragaria_vesca	FvH4_6g34380 FvH4_6g34380 FvH4_6g34380 FvH4_6g34380 FvH4_6g34380 FvH4_6g34380 FvH4_6g34380
malus_domestica	MD09G1186100.v1.1 MD17G1171000.v1.1
prunus_persica	Prupe.7G067500_v2.0.a1 Prupe.7G067500_v2.0.a1 Prupe.7G067500_v2.0.a1
pyrus_communis	pycom09g10330 pycom12419g00200 pycom12419g00210
rosa_chinensis	RchiOBHm_Chr2g0110201 RchiOBHm_Chr2g0144721
rosa_laevigata	RLG00000020103
rosa_multiflora	Rmu_co8157946.1_g000001 Rmu_sc0013504.1_g000008 Rmu_sc0020351.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101040 Rroxscaffold_3G00222660 Rroxscaffold_7G00205460
rosa_rugosa	Rorug02G0389100 Rorug02G0389100 Rorug02G0389200 Rorug02G0389300
rosa_samantha	Rh2AG440900 Rh2BG451300 Rh2CG220200 Rh2CG428200 Rh2DG461300 Rh3DG266300
rosa_wichuraiana	Rw2G021150 Rw2G036070 Rw7G020140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	418
AclWI	GGATC	3 cut(s)	39, 192, 502
AcoI	YGGCCR	1 cut(s)	621
AcsI	RAATTY	1 cut(s)	226
AfaI	GTAC	1 cut(s)	553
AflIII	ACRYGT	1 cut(s)	574
AgsI	TTSAA	3 cut(s)	41, 378, 426
AjnI	CCWGG	2 cut(s)	180, 355
AjuI	GAANNNNNNNTTGG	2 cut(s)	42, 74
AluBI	AGCT	4 cut(s)	103, 143, 429, 517
AluI	AGCT	4 cut(s)	103, 143, 429, 517
Alw26I	GTCTC	2 cut(s)	239, 332
AlwI	GGATC	3 cut(s)	39, 192, 502
AlwNI	CAGNNNCTG	2 cut(s)	27, 187
AoxI	GGCC	1 cut(s)	621
ApeKI	GCWGC	3 cut(s)	194, 214, 514
ApoI	RAATTY	1 cut(s)	226
AspS9I	GGNCC	2 cut(s)	113, 387
AsuC2I	CCSGG	1 cut(s)	625
AsuHPI	GGTGA	2 cut(s)	284, 572
AvaII	GGWCC	2 cut(s)	113, 387
BanI	GGYRCC	1 cut(s)	418
BbvCI	CCTCAGC	1 cut(s)	171
BbvI	GCAGC	3 cut(s)	206, 226, 526
BceAI	ACGGC	1 cut(s)	202
BciT130I	CCWGG	2 cut(s)	182, 357
BciVI	GTATCC	2 cut(s)	169, 287
BcnI	CCSGG	1 cut(s)	625
BcoDI	GTCTC	2 cut(s)	239, 332
BfaI	CTAG	1 cut(s)	510
BfmI	CTRYAG	2 cut(s)	12, 603
BfuI	GTATCC	2 cut(s)	169, 287
BisI	GCNGC	3 cut(s)	195, 215, 515
BlsI	GCNGC	3 cut(s)	196, 216, 516
Bme1390I	CCNGG	3 cut(s)	182, 357, 625
Bme18I	GGWCC	2 cut(s)	113, 387
BmgT120I	GGNCC	2 cut(s)	113, 387
BmiI	GGNNCC	1 cut(s)	420
BmrFI	CCNGG	3 cut(s)	182, 357, 625
BmrI	ACTGGG	1 cut(s)	37
BmsI	GCATC	1 cut(s)	530
BmuI	ACTGGG	1 cut(s)	37
Bpu10I	CCTNAGC	1 cut(s)	171
BpuEI	CTTGAG	1 cut(s)	125
BpuMI	CCSGG	1 cut(s)	625
Bsa29I	ATCGAT	1 cut(s)	381
BsaAI	YACGTR	1 cut(s)	329
BsaI	GGTCTC	2 cut(s)	239, 332
BsaJI	CCNNGG	3 cut(s)	180, 406, 624
BsaXI	ACNNNNNCTCC	2 cut(s)	402, 432
Bse118I	RCCGGY	1 cut(s)	557
Bse1I	ACTGG	3 cut(s)	32, 390, 549
BseBI	CCWGG	2 cut(s)	182, 357
BseCI	ATCGAT	1 cut(s)	381
BseDI	CCNNGG	3 cut(s)	180, 406, 624
BseMII	CTCAG	3 cut(s)	162, 327, 354
BseNI	ACTGG	3 cut(s)	32, 390, 549
BseRI	GAGGAG	2 cut(s)	247, 257
BseXI	GCAGC	3 cut(s)	206, 226, 526
BshFI	GGCC	1 cut(s)	623
BshNI	GGYRCC	1 cut(s)	418
BshVI	ATCGAT	1 cut(s)	381
BsiSI	CCGG	2 cut(s)	558, 624
BslFI	GGGAC	1 cut(s)	641
BsmAI	GTCTC	2 cut(s)	239, 332
BsmFI	GGGAC	1 cut(s)	641
BsnI	GGCC	1 cut(s)	623
Bso31I	GGTCTC	2 cut(s)	239, 332
Bsp143I	GATC	4 cut(s)	3, 31, 184, 494
Bsp19I	CCATGG	1 cut(s)	406
BspANI	GGCC	1 cut(s)	623
BspCNI	CTCAG	3 cut(s)	163, 328, 355
BspDI	ATCGAT	1 cut(s)	381
BspLI	GGNNCC	1 cut(s)	420
BspPI	GGATC	3 cut(s)	39, 192, 502
BspQI	GCTCTTC	1 cut(s)	436
BspT107I	GGYRCC	1 cut(s)	418
BspTNI	GGTCTC	2 cut(s)	239, 332
BsrFI	RCCGGY	1 cut(s)	557
BsrI	ACTGG	3 cut(s)	32, 390, 549
BssAI	RCCGGY	1 cut(s)	557
BssECI	CCNNGG	3 cut(s)	180, 406, 624
BssMI	GATC	4 cut(s)	3, 31, 184, 494
BssT1I	CCWWGG	1 cut(s)	406
Bst2UI	CCWGG	2 cut(s)	182, 357
Bst4CI	ACNGT	3 cut(s)	16, 590, 632
Bst6I	CTCTTC	1 cut(s)	436
BstBAI	YACGTR	1 cut(s)	329
BstC8I	GCNNGC	4 cut(s)	192, 212, 519, 621
BstDEI	CTNAG	3 cut(s)	171, 336, 363
BstDSI	CCRYGG	1 cut(s)	406
BstKTI	GATC	4 cut(s)	6, 34, 187, 497
BstMAI	GTCTC	2 cut(s)	239, 332
BstMBI	GATC	4 cut(s)	3, 31, 184, 494
BstMWI	GCNNNNNNNGC	1 cut(s)	554
BstNI	CCWGG	2 cut(s)	182, 357
BstNSI	RCATGY	3 cut(s)	194, 214, 578
BstSCI	CCNGG	3 cut(s)	180, 355, 623
BstSFI	CTRYAG	2 cut(s)	12, 603
BstV1I	GCAGC	3 cut(s)	206, 226, 526
BstX2I	RGATCY	2 cut(s)	184, 494
BstYI	RGATCY	2 cut(s)	184, 494
Bsu15I	ATCGAT	1 cut(s)	381
BsuI	GTATCC	2 cut(s)	169, 287
BsuRI	GGCC	1 cut(s)	623
BsuTUI	ATCGAT	1 cut(s)	381
BtgI	CCRYGG	1 cut(s)	406
BtsI	GCAGTG	1 cut(s)	574
BtsIMutI	CAGTG	3 cut(s)	397, 574, 595
Cac8I	GCNNGC	4 cut(s)	192, 212, 519, 621
CaiI	CAGNNNCTG	2 cut(s)	27, 187
Cfr10I	RCCGGY	1 cut(s)	557
Cfr13I	GGNCC	2 cut(s)	113, 387
ClaI	ATCGAT	1 cut(s)	381
Csp6I	GTAC	1 cut(s)	552
CviAII	CATG	6 cut(s)	8, 191, 211, 407, 506, 575
CviJI	RGCY	8 cut(s)	103, 143, 170, 217, 429, 517, 557, 623
CviKI_1	RGCY	8 cut(s)	103, 143, 170, 217, 429, 517, 557, 623
CviQI	GTAC	1 cut(s)	552
DdeI	CTNAG	3 cut(s)	171, 336, 363
DpnI	GATC	4 cut(s)	5, 33, 186, 496
DpnII	GATC	4 cut(s)	3, 31, 184, 494
EaeI	YGGCCR	1 cut(s)	621
Eam1104I	CTCTTC	1 cut(s)	436
EarI	CTCTTC	1 cut(s)	436
Eco130I	CCWWGG	1 cut(s)	406
Eco31I	GGTCTC	2 cut(s)	239, 332
Eco47I	GGWCC	2 cut(s)	113, 387
EcoO109I	RGGNCCY	1 cut(s)	113
EcoRII	CCWGG	2 cut(s)	180, 355
EcoT14I	CCWWGG	1 cut(s)	406
ErhI	CCWWGG	1 cut(s)	406
FaeI	CATG	6 cut(s)	11, 194, 214, 410, 509, 578
FalI	AAGNNNNNCTT	2 cut(s)	127, 159
FaqI	GGGAC	1 cut(s)	641
FatI	CATG	6 cut(s)	7, 190, 210, 406, 505, 574
FauNDI	CATATG	1 cut(s)	615
Fnu4HI	GCNGC	3 cut(s)	195, 215, 515
Fsp4HI	GCNGC	3 cut(s)	195, 215, 515
FspBI	CTAG	1 cut(s)	510
GluI	GCNGC	3 cut(s)	195, 215, 515
HaeIII	GGCC	1 cut(s)	623
HapII	CCGG	2 cut(s)	558, 624
Hin1II	CATG	6 cut(s)	11, 194, 214, 410, 509, 578
HindIII	AAGCTT	2 cut(s)	101, 141
HinfI	GANTC	3 cut(s)	323, 461, 599
HpaII	CCGG	2 cut(s)	558, 624
HphI	GGTGA	2 cut(s)	284, 572
Hpy166II	GTNNAC	1 cut(s)	572
Hpy188I	TCNGA	3 cut(s)	364, 460, 526
Hpy188III	TCNNGA	2 cut(s)	22, 492
Hpy8I	GTNNAC	1 cut(s)	572
HpyAV	CCTTC	1 cut(s)	432
HpyCH4III	ACNGT	3 cut(s)	16, 590, 632
HpyCH4IV	ACGT	2 cut(s)	328, 638
HpyCH4V	TGCA	3 cut(s)	190, 194, 214
HpyF10VI	GCNNNNNNNGC	1 cut(s)	554
HpyF3I	CTNAG	3 cut(s)	171, 336, 363
HpySE526I	ACGT	2 cut(s)	328, 638
Hsp92II	CATG	6 cut(s)	11, 194, 214, 410, 509, 578
Kzo9I	GATC	4 cut(s)	3, 31, 184, 494
LguI	GCTCTTC	1 cut(s)	436
Lsp1109I	GCAGC	3 cut(s)	206, 226, 526
LweI	GCATC	1 cut(s)	530
MaeI	CTAG	1 cut(s)	510
MaeII	ACGT	2 cut(s)	328, 638
MalI	GATC	4 cut(s)	5, 33, 186, 496
MboI	GATC	4 cut(s)	3, 31, 184, 494
MboII	GAAGA	2 cut(s)	314, 423
MflI	RGATCY	2 cut(s)	184, 494
MluCI	AATT	3 cut(s)	35, 162, 226
MlyI	GAGTC	1 cut(s)	593
MmeI	TCCRAC	1 cut(s)	111
MspA1I	CMGCKG	1 cut(s)	517
MspI	CCGG	2 cut(s)	558, 624
MspR9I	CCNGG	3 cut(s)	182, 357, 625
MvaI	CCWGG	2 cut(s)	182, 357
MwoI	GCNNNNNNNGC	1 cut(s)	554
NciI	CCSGG	1 cut(s)	625
NcoI	CCATGG	1 cut(s)	406
NdeI	CATATG	1 cut(s)	615
NdeII	GATC	4 cut(s)	3, 31, 184, 494
NlaIII	CATG	6 cut(s)	11, 194, 214, 410, 509, 578
NlaIV	GGNNCC	1 cut(s)	420
NspI	RCATGY	3 cut(s)	194, 214, 578
PaeI	GCATGC	2 cut(s)	194, 214
PciI	ACATGT	1 cut(s)	574
PciSI	GCTCTTC	1 cut(s)	436
PfeI	GAWTC	2 cut(s)	323, 461
PkrI	GCNGC	3 cut(s)	196, 216, 516
PleI	GAGTC	1 cut(s)	593
PpsI	GAGTC	1 cut(s)	593
Ppu21I	YACGTR	1 cut(s)	329
PpuMI	RGGWCCY	1 cut(s)	113
PscI	ACATGT	1 cut(s)	574
Psp5II	RGGWCCY	1 cut(s)	113
Psp6I	CCWGG	2 cut(s)	180, 355
PspGI	CCWGG	2 cut(s)	180, 355
PspN4I	GGNNCC	1 cut(s)	420
PspPI	GGNCC	2 cut(s)	113, 387
PspPPI	RGGWCCY	1 cut(s)	113
PstNI	CAGNNNCTG	2 cut(s)	27, 187
PsuI	RGATCY	2 cut(s)	184, 494
PvuII	CAGCTG	1 cut(s)	517
RsaI	GTAC	1 cut(s)	553
RsaNI	GTAC	1 cut(s)	552
SapI	GCTCTTC	1 cut(s)	436
SatI	GCNGC	3 cut(s)	195, 215, 515
Sau3AI	GATC	4 cut(s)	3, 31, 184, 494
Sau96I	GGNCC	2 cut(s)	113, 387
SchI	GAGTC	1 cut(s)	593
ScrFI	CCNGG	3 cut(s)	182, 357, 625
SfaNI	GCATC	1 cut(s)	530
SfcI	CTRYAG	2 cut(s)	12, 603
SinI	GGWCC	2 cut(s)	113, 387
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
SphI	GCATGC	2 cut(s)	194, 214
Sse9I	AATT	3 cut(s)	35, 162, 226
SspMI	CTAG	1 cut(s)	510
StyD4I	CCNGG	3 cut(s)	180, 355, 623
StyI	CCWWGG	1 cut(s)	406
TaaI	ACNGT	3 cut(s)	16, 590, 632
TaiI	ACGT	2 cut(s)	331, 641
TaqI	TCGA	1 cut(s)	381
TasI	AATT	3 cut(s)	35, 162, 226
TatI	WGTACW	1 cut(s)	551
TfiI	GAWTC	2 cut(s)	323, 461
TscAI	CASTG	3 cut(s)	397, 574, 595
TseI	GCWGC	3 cut(s)	194, 214, 514
TspDTI	ATGAA	4 cut(s)	63, 237, 315, 423
TspRI	CASTG	3 cut(s)	397, 574, 595
VpaK11BI	GGWCC	2 cut(s)	113, 387
XapI	RAATTY	1 cut(s)	226
XceI	RCATGY	3 cut(s)	194, 214, 578
XspI	CTAG	1 cut(s)	510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.