Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0002232

Physical Location & Seq

Genomic Coordinates Reverse (-)

29158765 .. 29162568

Gene Structure 3804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G021150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGCCGCTAATAAAACTCAAGGCTGGATTGGCGACTCCTTTGATCTCTACAAGGAATACAGAGAGGGATTGTTGAGTGAGGTCCAGCATGAAAAACATCAGGAGCTTATGCTAGATTCCTCCATATCACAATCCCGCCGTGGTGAGATGGAGAGAGAGCTGGAGCCGTGGATCCCTAATGAAGATGATCCACGTCCTGAGTTGGAAAATATATTTGATGGACATTGGAATAGGAACTGGGATCAATTTGAAACAAATGAAGCATTATTTGGGGTAAAAAGCTCATTTGATGAGGAACTTTACACAACAAAGCTTGAGAAAGGTAGAGCAATAAGTTATGAAGTTGTTCTGAATTTGCCTACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009987 GO:0010494 GO:0010603 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0032991 GO:0033043 GO:0034063 GO:0034622 GO:0035770 GO:0036464 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051128 GO:0065003 GO:0065007 GO:0070925 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1902115 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LsmAD PAM2 SM-ATX

Protein Analysis

121

Amino Acids

14.28

Weight (kDa)

4.54

Isoelectric Point (pI)

43.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LsmAD	PF06741	90 - 109	7.4e-06	LsmAD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54170 AT3G14010 AT3G14010 AT3G14010 AT3G14010 AT3G14010
fragaria_vesca	FvH4_6g34380 FvH4_6g34380 FvH4_6g34380 FvH4_6g34380 FvH4_6g34380 FvH4_6g34380 FvH4_6g34380
malus_domestica	MD09G1186100.v1.1 MD17G1171000.v1.1
prunus_persica	Prupe.7G067500_v2.0.a1 Prupe.7G067500_v2.0.a1 Prupe.7G067500_v2.0.a1
pyrus_communis	pycom09g10330 pycom12419g00200 pycom12419g00210
rosa_chinensis	RchiOBHm_Chr2g0110201 RchiOBHm_Chr2g0144721
rosa_laevigata	RLG00000020103
rosa_multiflora	Rmu_co8157946.1_g000001 Rmu_sc0013504.1_g000008 Rmu_sc0020351.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101040 Rroxscaffold_3G00222660 Rroxscaffold_7G00205460
rosa_rugosa	Rorug02G0389100 Rorug02G0389100 Rorug02G0389200 Rorug02G0389300
rosa_samantha	Rh2AG440900 Rh2BG451300 Rh2CG220200 Rh2CG428200 Rh2DG461300 Rh3DG266300
rosa_wichuraiana	Rw2G021150 Rw2G036070 Rw7G020140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	6, 136
AclWI	GGATC	4 cut(s)	166, 179, 182, 249
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	352
AgsI	TTSAA	1 cut(s)	251
AjiI	CACGTC	1 cut(s)	194
AjuI	GAANNNNNNNTTGG	2 cut(s)	252, 284
AluBI	AGCT	4 cut(s)	106, 160, 282, 313
AluI	AGCT	4 cut(s)	106, 160, 282, 313
AlwI	GGATC	4 cut(s)	166, 179, 182, 249
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	1 cut(s)	352
Asp700I	GAANNNNTTC	1 cut(s)	345
AspS9I	GGNCC	1 cut(s)	82
AsuHPI	GGTGA	1 cut(s)	155
AvaII	GGWCC	1 cut(s)	82
BamHI	GGATCC	1 cut(s)	171
BccI	CCATC	2 cut(s)	142, 212
BceAI	ACGGC	2 cut(s)	123, 151
BfaI	CTAG	1 cut(s)	113
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme18I	GGWCC	1 cut(s)	82
BmgBI	CACGTC	1 cut(s)	194
BmgT120I	GGNCC	1 cut(s)	82
BmiI	GGNNCC	2 cut(s)	165, 173
BmrI	ACTGGG	1 cut(s)	247
BmuI	ACTGGG	1 cut(s)	247
BpmI	CTGGAG	1 cut(s)	182
BpuEI	CTTGAG	1 cut(s)	335
BsaJI	CCNNGG	2 cut(s)	139, 167
Bse1I	ACTGG	1 cut(s)	242
BseDI	CCNNGG	2 cut(s)	139, 167
BseMII	CTCAG	1 cut(s)	189
BseNI	ACTGG	1 cut(s)	242
BshFI	GGCC	1 cut(s)	5
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	4 cut(s)	43, 171, 187, 241
BspACI	CCGC	2 cut(s)	6, 136
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	190
BspLI	GGNNCC	2 cut(s)	165, 173
BspPI	GGATC	4 cut(s)	166, 179, 182, 249
BsrI	ACTGG	1 cut(s)	242
BssECI	CCNNGG	2 cut(s)	139, 167
BssMI	GATC	4 cut(s)	43, 171, 187, 241
BstDEI	CTNAG	1 cut(s)	198
BstDSI	CCRYGG	2 cut(s)	139, 167
BstKTI	GATC	4 cut(s)	46, 174, 190, 244
BstMBI	GATC	4 cut(s)	43, 171, 187, 241
BstMWI	GCNNNNNNNGC	1 cut(s)	30
BstX2I	RGATCY	1 cut(s)	171
BstYI	RGATCY	1 cut(s)	171
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	2 cut(s)	139, 167
BtrI	CACGTC	1 cut(s)	194
Cfr13I	GGNCC	1 cut(s)	82
CviAII	CATG	1 cut(s)	89
CviJI	RGCY	7 cut(s)	5, 24, 106, 160, 166, 282, 313
CviKI_1	RGCY	7 cut(s)	5, 24, 106, 160, 166, 282, 313
DdeI	CTNAG	1 cut(s)	198
DpnI	GATC	4 cut(s)	45, 173, 189, 243
DpnII	GATC	4 cut(s)	43, 171, 187, 241
EaeI	YGGCCR	1 cut(s)	3
Eco47I	GGWCC	1 cut(s)	82
FaeI	CATG	1 cut(s)	92
FaiI	YATR	5 cut(s)	90, 110, 125, 212, 339
FatI	CATG	1 cut(s)	88
FauI	CCCGC	1 cut(s)	143
Fnu4HI	GCNGC	1 cut(s)	6
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	1 cut(s)	113
GluI	GCNGC	1 cut(s)	6
GsuI	CTGGAG	1 cut(s)	182
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	92
HindIII	AAGCTT	1 cut(s)	311
HinfI	GANTC	2 cut(s)	35, 116
HphI	GGTGA	1 cut(s)	155
Hpy188I	TCNGA	1 cut(s)	351
Hpy188III	TCNNGA	2 cut(s)	101, 197
HpyCH4IV	ACGT	1 cut(s)	193
HpyF10VI	GCNNNNNNNGC	1 cut(s)	30
HpyF3I	CTNAG	1 cut(s)	198
HpySE526I	ACGT	1 cut(s)	193
Hsp92II	CATG	1 cut(s)	92
Kzo9I	GATC	4 cut(s)	43, 171, 187, 241
LmnI	GCTCC	2 cut(s)	103, 163
LpnPI	CCDG	6 cut(s)	10, 86, 98, 146, 210, 223
MaeI	CTAG	1 cut(s)	113
MaeII	ACGT	1 cut(s)	193
MalI	GATC	4 cut(s)	45, 173, 189, 243
MboI	GATC	4 cut(s)	43, 171, 187, 241
MboII	GAAGA	1 cut(s)	194
MflI	RGATCY	1 cut(s)	171
MluCI	AATT	2 cut(s)	245, 352
MlyI	GAGTC	1 cut(s)	29
MmeI	TCCRAC	1 cut(s)	183
MnlI	CCTC	4 cut(s)	58, 73, 130, 286
MroXI	GAANNNNTTC	1 cut(s)	345
MwoI	GCNNNNNNNGC	1 cut(s)	30
NdeII	GATC	4 cut(s)	43, 171, 187, 241
NlaIII	CATG	1 cut(s)	92
NlaIV	GGNNCC	2 cut(s)	165, 173
PdmI	GAANNNNTTC	1 cut(s)	345
PfeI	GAWTC	1 cut(s)	116
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	1 cut(s)	29
PpsI	GAGTC	1 cut(s)	29
PspN4I	GGNNCC	2 cut(s)	165, 173
PspPI	GGNCC	1 cut(s)	82
PsuI	RGATCY	1 cut(s)	171
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	4 cut(s)	43, 171, 187, 241
Sau96I	GGNCC	1 cut(s)	82
SchI	GAGTC	1 cut(s)	29
SetI	ASST	8 cut(s)	84, 108, 162, 196, 284, 315, 325, 365
SinI	GGWCC	1 cut(s)	82
SmlI	CTYRAG	2 cut(s)	18, 314
SmoI	CTYRAG	2 cut(s)	18, 314
Sse9I	AATT	2 cut(s)	245, 352
SsiI	CCGC	2 cut(s)	6, 136
SspMI	CTAG	1 cut(s)	113
TaiI	ACGT	1 cut(s)	196
TasI	AATT	2 cut(s)	245, 352
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	116
TspDTI	ATGAA	4 cut(s)	105, 195, 273, 354
VpaK11BI	GGWCC	1 cut(s)	82
XapI	RAATTY	1 cut(s)	352
XmnI	GAANNNNTTC	1 cut(s)	345
XspI	CTAG	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.