Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002232

Physical Location & Seq

Genomic Coordinates Forward (+)

21941674 .. 21944922

Gene Structure 3249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG220200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGAAAATATATTTGATGGACATTGGAATAGGAACTGGGATCAATTTGAAACAAATGAAGCATTATTTGGGGTAAAAAGCACATTTGATGAGGAACTTTACACAACAAAGCTTGAGAAAGGTCCTAAAATGAGAGAGTTGGAAAGGGAAGCTTTACGAATAGCAAGAGAAATTGAGGGTGAGGATACCCAGGATCTGCATGCAGCAGAGGAAAGAGGCATGCAGCCGTATGAAAATTTTGATATTGATGAGGAGACCAGATACTCCTCTGTTTATCGGGGTGAGGTAGTTGATGATAGTGGATACGATGAAGATGAGGATATTTTATTGGATTCACGTAATACTGAGACCTTTGGAGGTTCTCCTGGTTCTGAGCAAAAGAGTTCAATCGATTGGACCAGTGGAAAAGGCAACCATGGAGTTCAGGTGCCTTCAAGCTCTTCATCTGTGGATTACACACACTATTCTGAATCAAATGTCGCCCCAGAGTTATATCGTTCTGGATCTTATGACCATGCTAGGCAGCTGGCATCAGAACCACCTAATAAAAGTTTTGCCAGTACAGCCGGTGAAAGCAGTGAACATGTAGATACCGACAGTGCTACTGACTCTGTAGAAAAGCATATGCTGGCCGGGGACAGTCAAACGTCAAAACCAGATGGATTTAGCAAAAAGTTTGCACAAGGATTGTGTTGCAATAAAGGAACCAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009987 GO:0010494 GO:0010603 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0032991 GO:0033043 GO:0034063 GO:0034622 GO:0035770 GO:0036464 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051128 GO:0065003 GO:0065007 GO:0070925 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1902115 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LsmAD PAM2 SM-ATX

Protein Analysis

237

Amino Acids

26.46

Weight (kDa)

4.48

Isoelectric Point (pI)

46.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LsmAD	PF06741	23 - 93	2.2e-25	LsmAD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54170 AT3G14010 AT3G14010 AT3G14010 AT3G14010 AT3G14010
fragaria_vesca	FvH4_6g34380 FvH4_6g34380 FvH4_6g34380 FvH4_6g34380 FvH4_6g34380 FvH4_6g34380 FvH4_6g34380
malus_domestica	MD09G1186100.v1.1 MD17G1171000.v1.1
prunus_persica	Prupe.7G067500_v2.0.a1 Prupe.7G067500_v2.0.a1 Prupe.7G067500_v2.0.a1
pyrus_communis	pycom09g10330 pycom12419g00200 pycom12419g00210
rosa_chinensis	RchiOBHm_Chr2g0110201 RchiOBHm_Chr2g0144721
rosa_laevigata	RLG00000020103
rosa_multiflora	Rmu_co8157946.1_g000001 Rmu_sc0013504.1_g000008 Rmu_sc0020351.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101040 Rroxscaffold_3G00222660 Rroxscaffold_7G00205460
rosa_rugosa	Rorug02G0389100 Rorug02G0389100 Rorug02G0389200 Rorug02G0389300
rosa_samantha	Rh2AG440900 Rh2BG451300 Rh2CG220200 Rh2CG428200 Rh2DG461300 Rh3DG266300
rosa_wichuraiana	Rw2G021150 Rw2G036070 Rw7G020140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	427
AclWI	GGATC	3 cut(s)	48, 201, 511
AcoI	YGGCCR	1 cut(s)	630
AcsI	RAATTY	1 cut(s)	235
AfaI	GTAC	1 cut(s)	562
AflIII	ACRYGT	1 cut(s)	583
AgsI	TTSAA	3 cut(s)	50, 387, 435
AjnI	CCWGG	2 cut(s)	189, 364
AjuI	GAANNNNNNNTTGG	2 cut(s)	51, 83
AluBI	AGCT	5 cut(s)	112, 152, 438, 526, 711
AluI	AGCT	5 cut(s)	112, 152, 438, 526, 711
Alw26I	GTCTC	2 cut(s)	248, 341
AlwI	GGATC	3 cut(s)	48, 201, 511
AlwNI	CAGNNNCTG	1 cut(s)	196
AoxI	GGCC	1 cut(s)	630
ApeKI	GCWGC	3 cut(s)	203, 223, 523
ApoI	RAATTY	1 cut(s)	235
AspS9I	GGNCC	2 cut(s)	122, 396
AsuC2I	CCSGG	1 cut(s)	634
AsuHPI	GGTGA	3 cut(s)	191, 293, 581
AvaII	GGWCC	2 cut(s)	122, 396
BanI	GGYRCC	1 cut(s)	427
BbvI	GCAGC	3 cut(s)	215, 235, 535
BccI	CCATC	2 cut(s)	11, 653
BceAI	ACGGC	1 cut(s)	211
BciT130I	CCWGG	2 cut(s)	191, 366
BciVI	GTATCC	2 cut(s)	178, 296
BcnI	CCSGG	1 cut(s)	634
BcoDI	GTCTC	2 cut(s)	248, 341
BfaI	CTAG	1 cut(s)	519
BfmI	CTRYAG	1 cut(s)	612
BfuI	GTATCC	2 cut(s)	178, 296
BisI	GCNGC	3 cut(s)	204, 224, 524
BlsI	GCNGC	3 cut(s)	205, 225, 525
Bme1390I	CCNGG	3 cut(s)	191, 366, 634
Bme18I	GGWCC	2 cut(s)	122, 396
BmgT120I	GGNCC	2 cut(s)	122, 396
BmiI	GGNNCC	2 cut(s)	429, 706
BmrFI	CCNGG	3 cut(s)	191, 366, 634
BmrI	ACTGGG	1 cut(s)	46
BmsI	GCATC	1 cut(s)	539
BmuI	ACTGGG	1 cut(s)	46
BpuEI	CTTGAG	1 cut(s)	134
BpuMI	CCSGG	1 cut(s)	634
Bsa29I	ATCGAT	1 cut(s)	390
BsaAI	YACGTR	1 cut(s)	338
BsaI	GGTCTC	2 cut(s)	248, 341
BsaJI	CCNNGG	3 cut(s)	189, 415, 633
BsaXI	ACNNNNNCTCC	2 cut(s)	411, 441
Bse118I	RCCGGY	1 cut(s)	566
Bse1I	ACTGG	3 cut(s)	41, 399, 558
BseBI	CCWGG	2 cut(s)	191, 366
BseCI	ATCGAT	1 cut(s)	390
BseDI	CCNNGG	3 cut(s)	189, 415, 633
BseMII	CTCAG	2 cut(s)	336, 363
BseNI	ACTGG	3 cut(s)	41, 399, 558
BseRI	GAGGAG	2 cut(s)	256, 266
BseXI	GCAGC	3 cut(s)	215, 235, 535
BshFI	GGCC	1 cut(s)	632
BshNI	GGYRCC	1 cut(s)	427
BshVI	ATCGAT	1 cut(s)	390
BsiSI	CCGG	2 cut(s)	567, 633
BslFI	GGGAC	1 cut(s)	650
BsmAI	GTCTC	2 cut(s)	248, 341
BsmFI	GGGAC	1 cut(s)	650
BsnI	GGCC	1 cut(s)	632
Bso31I	GGTCTC	2 cut(s)	248, 341
Bsp143I	GATC	3 cut(s)	40, 193, 503
Bsp19I	CCATGG	1 cut(s)	415
BspANI	GGCC	1 cut(s)	632
BspCNI	CTCAG	2 cut(s)	337, 364
BspDI	ATCGAT	1 cut(s)	390
BspLI	GGNNCC	2 cut(s)	429, 706
BspPI	GGATC	3 cut(s)	48, 201, 511
BspQI	GCTCTTC	1 cut(s)	445
BspT107I	GGYRCC	1 cut(s)	427
BspTNI	GGTCTC	2 cut(s)	248, 341
BsrFI	RCCGGY	1 cut(s)	566
BsrI	ACTGG	3 cut(s)	41, 399, 558
BssAI	RCCGGY	1 cut(s)	566
BssECI	CCNNGG	3 cut(s)	189, 415, 633
BssMI	GATC	3 cut(s)	40, 193, 503
BssT1I	CCWWGG	1 cut(s)	415
Bst2UI	CCWGG	2 cut(s)	191, 366
Bst4CI	ACNGT	2 cut(s)	599, 641
Bst6I	CTCTTC	1 cut(s)	445
BstBAI	YACGTR	1 cut(s)	338
BstC8I	GCNNGC	4 cut(s)	201, 221, 528, 630
BstDEI	CTNAG	2 cut(s)	345, 372
BstDSI	CCRYGG	1 cut(s)	415
BstKTI	GATC	3 cut(s)	43, 196, 506
BstMAI	GTCTC	2 cut(s)	248, 341
BstMBI	GATC	3 cut(s)	40, 193, 503
BstMWI	GCNNNNNNNGC	1 cut(s)	563
BstNI	CCWGG	2 cut(s)	191, 366
BstNSI	RCATGY	3 cut(s)	203, 223, 587
BstSCI	CCNGG	3 cut(s)	189, 364, 632
BstSFI	CTRYAG	1 cut(s)	612
BstV1I	GCAGC	3 cut(s)	215, 235, 535
BstX2I	RGATCY	2 cut(s)	193, 503
BstYI	RGATCY	2 cut(s)	193, 503
Bsu15I	ATCGAT	1 cut(s)	390
BsuI	GTATCC	2 cut(s)	178, 296
BsuRI	GGCC	1 cut(s)	632
BsuTUI	ATCGAT	1 cut(s)	390
BtgI	CCRYGG	1 cut(s)	415
BtsI	GCAGTG	1 cut(s)	583
BtsIMutI	CAGTG	3 cut(s)	406, 583, 604
Cac8I	GCNNGC	4 cut(s)	201, 221, 528, 630
CaiI	CAGNNNCTG	1 cut(s)	196
Cfr10I	RCCGGY	1 cut(s)	566
Cfr13I	GGNCC	2 cut(s)	122, 396
ClaI	ATCGAT	1 cut(s)	390
Csp6I	GTAC	1 cut(s)	561
CviAII	CATG	5 cut(s)	200, 220, 416, 515, 584
CviJI	RGCY	8 cut(s)	112, 152, 226, 438, 526, 566, 632, 711
CviKI_1	RGCY	8 cut(s)	112, 152, 226, 438, 526, 566, 632, 711
CviQI	GTAC	1 cut(s)	561
DdeI	CTNAG	2 cut(s)	345, 372
DpnI	GATC	3 cut(s)	42, 195, 505
DpnII	GATC	3 cut(s)	40, 193, 503
EaeI	YGGCCR	1 cut(s)	630
Eam1104I	CTCTTC	1 cut(s)	445
EarI	CTCTTC	1 cut(s)	445
Eco130I	CCWWGG	1 cut(s)	415
Eco31I	GGTCTC	2 cut(s)	248, 341
Eco47I	GGWCC	2 cut(s)	122, 396
EcoO109I	RGGNCCY	1 cut(s)	122
EcoRII	CCWGG	2 cut(s)	189, 364
EcoT14I	CCWWGG	1 cut(s)	415
ErhI	CCWWGG	1 cut(s)	415
FaeI	CATG	5 cut(s)	203, 223, 419, 518, 587
FalI	AAGNNNNNCTT	2 cut(s)	136, 168
FaqI	GGGAC	1 cut(s)	650
FatI	CATG	5 cut(s)	199, 219, 415, 514, 583
FauNDI	CATATG	1 cut(s)	624
Fnu4HI	GCNGC	3 cut(s)	204, 224, 524
Fsp4HI	GCNGC	3 cut(s)	204, 224, 524
FspBI	CTAG	1 cut(s)	519
GluI	GCNGC	3 cut(s)	204, 224, 524
HaeIII	GGCC	1 cut(s)	632
HapII	CCGG	2 cut(s)	567, 633
Hin1II	CATG	5 cut(s)	203, 223, 419, 518, 587
HindIII	AAGCTT	2 cut(s)	110, 150
HinfI	GANTC	3 cut(s)	332, 470, 608
HpaII	CCGG	2 cut(s)	567, 633
HphI	GGTGA	3 cut(s)	191, 293, 581
Hpy166II	GTNNAC	1 cut(s)	581
Hpy188I	TCNGA	3 cut(s)	373, 469, 535
Hpy188III	TCNNGA	1 cut(s)	501
Hpy8I	GTNNAC	1 cut(s)	581
HpyAV	CCTTC	1 cut(s)	441
HpyCH4III	ACNGT	2 cut(s)	599, 641
HpyCH4IV	ACGT	2 cut(s)	337, 647
HpyCH4V	TGCA	5 cut(s)	199, 203, 223, 680, 696
HpyF10VI	GCNNNNNNNGC	1 cut(s)	563
HpyF3I	CTNAG	2 cut(s)	345, 372
HpySE526I	ACGT	2 cut(s)	337, 647
Hsp92II	CATG	5 cut(s)	203, 223, 419, 518, 587
Kzo9I	GATC	3 cut(s)	40, 193, 503
LguI	GCTCTTC	1 cut(s)	445
Lsp1109I	GCAGC	3 cut(s)	215, 235, 535
LweI	GCATC	1 cut(s)	539
MaeI	CTAG	1 cut(s)	519
MaeII	ACGT	2 cut(s)	337, 647
MalI	GATC	3 cut(s)	42, 195, 505
MboI	GATC	3 cut(s)	40, 193, 503
MboII	GAAGA	2 cut(s)	323, 432
MflI	RGATCY	2 cut(s)	193, 503
MluCI	AATT	3 cut(s)	44, 171, 235
MlyI	GAGTC	1 cut(s)	602
MmeI	TCCRAC	1 cut(s)	120
MspA1I	CMGCKG	1 cut(s)	526
MspI	CCGG	2 cut(s)	567, 633
MspR9I	CCNGG	3 cut(s)	191, 366, 634
MvaI	CCWGG	2 cut(s)	191, 366
MwoI	GCNNNNNNNGC	1 cut(s)	563
NciI	CCSGG	1 cut(s)	634
NcoI	CCATGG	1 cut(s)	415
NdeI	CATATG	1 cut(s)	624
NdeII	GATC	3 cut(s)	40, 193, 503
NlaIII	CATG	5 cut(s)	203, 223, 419, 518, 587
NlaIV	GGNNCC	2 cut(s)	429, 706
NspI	RCATGY	3 cut(s)	203, 223, 587
PaeI	GCATGC	2 cut(s)	203, 223
PciI	ACATGT	1 cut(s)	583
PciSI	GCTCTTC	1 cut(s)	445
PfeI	GAWTC	2 cut(s)	332, 470
PkrI	GCNGC	3 cut(s)	205, 225, 525
PleI	GAGTC	1 cut(s)	602
PpsI	GAGTC	1 cut(s)	602
Ppu21I	YACGTR	1 cut(s)	338
PpuMI	RGGWCCY	1 cut(s)	122
PscI	ACATGT	1 cut(s)	583
Psp5II	RGGWCCY	1 cut(s)	122
Psp6I	CCWGG	2 cut(s)	189, 364
PspGI	CCWGG	2 cut(s)	189, 364
PspN4I	GGNNCC	2 cut(s)	429, 706
PspPI	GGNCC	2 cut(s)	122, 396
PspPPI	RGGWCCY	1 cut(s)	122
PstNI	CAGNNNCTG	1 cut(s)	196
PsuI	RGATCY	2 cut(s)	193, 503
PvuII	CAGCTG	1 cut(s)	526
RsaI	GTAC	1 cut(s)	562
RsaNI	GTAC	1 cut(s)	561
SapI	GCTCTTC	1 cut(s)	445
SatI	GCNGC	3 cut(s)	204, 224, 524
Sau3AI	GATC	3 cut(s)	40, 193, 503
Sau96I	GGNCC	2 cut(s)	122, 396
SchI	GAGTC	1 cut(s)	602
ScrFI	CCNGG	3 cut(s)	191, 366, 634
SfaNI	GCATC	1 cut(s)	539
SfcI	CTRYAG	1 cut(s)	612
SinI	GGWCC	2 cut(s)	122, 396
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
SphI	GCATGC	2 cut(s)	203, 223
Sse9I	AATT	3 cut(s)	44, 171, 235
SspMI	CTAG	1 cut(s)	519
StyD4I	CCNGG	3 cut(s)	189, 364, 632
StyI	CCWWGG	1 cut(s)	415
TaaI	ACNGT	2 cut(s)	599, 641
TaiI	ACGT	2 cut(s)	340, 650
TaqI	TCGA	1 cut(s)	390
TasI	AATT	3 cut(s)	44, 171, 235
TatI	WGTACW	1 cut(s)	560
TfiI	GAWTC	2 cut(s)	332, 470
TscAI	CASTG	3 cut(s)	406, 583, 604
TseI	GCWGC	3 cut(s)	203, 223, 523
TspDTI	ATGAA	4 cut(s)	72, 246, 324, 432
TspRI	CASTG	3 cut(s)	406, 583, 604
VpaK11BI	GGWCC	2 cut(s)	122, 396
XapI	RAATTY	1 cut(s)	235
XceI	RCATGY	3 cut(s)	203, 223, 587
XspI	CTAG	1 cut(s)	519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.