Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002232

Physical Location & Seq

Genomic Coordinates Forward (+)

49591771 .. 49602422

Gene Structure 10652 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0389100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4269 bp

ATGGAGAGTGGTAATATCCAATTAGGCAGTTCCTCTATATGGAGGAACCATGGTAGTGTGGACGCTTTTTCGAGTTCTACACGCAGAGAAGACGATGAAGAAGCTCTCAAATGGGCTTCCCTAGAGAAGCTTCCCACTTATAATCGTCTGAGGAAAGGTATACTCACCTCAGCCAGTGGAAAAGCTAATGAAATTGATATACCAAATCTTGGTTTTGAAGAGAAAAAGGACTTGGTTGAGAGGTTGCTTAAAGGCACTGAAGACGGCAACGAAAAGTTTGTATTGAAGCTCAAGAATCGTATTGATAGAGTTGGAATTGATCTTCCCACAATTGAAGTTCGATTTGAGCATCTAAATATAGAAGCAGAAGCTTATGTAGGAAGCCGAGCTTTGCCTACTCTCGTAAACTGGACTGCTAACATAATCCAGGGATTCTTGACCAATCTCAGTATACTTTCAAGTAGCAAGACAAAAGTCTCTATCCTTAACAATGTTAGTGGAATTATAAAGCCTAGCAGAATGACATTACTATTGGGTCCTCCAAGTTCCGGCAAGACCACACTGTTATTGGCTTTGGCTGGAAAGCTTGATCCAGGTCTAAAGCTGTCGGGAGCAGTGACTTATAATGGCCATGGAATGAATGAGTTTGTACCCCAAAAAACTGCTGCATACATCAGTCAATATGATATGCATATTGGAGAAATGACTGTAAGGGAGACATTGGCCTTTTCTGCAAGATGCCAAGGGGTCGGAACTCGTTACGATATGCTAGCTGAGCTATCCAGAAGAGAGAAAGCAGCTAATATAAAGCCTGATCCTGACATTGATGTCTTCATGAAGGCAACAGCAACAGAAGGTCAGGAGGTGAACGTAGTGACAGATTACATTCTGAAGATTTTGGGACTGGAAGTGTGTGCTGATACGATGGTAGGGGATCAAATGTTAAGAGGTATCTCCGGAGGACAAAGGAAGCGTGTTACAACAGGTGAGATGCTTGTTGGACCAGCAAACGCTTTGTTCATGGACGAGATATCTACCGGTTTGGACAGCTCGACAACATTTCAAATTGTGAATTCAATCAAACAAAATATTCACACATTTAATGGAACGGCTGTCATCTCACTCCTCCAGCCAGCACCAGAGACTTATGAGCTTTTTGATGACATTATCCTCCTCTCAGATGGCCAGATTGTGTACCAGGGTCCTCGTGAGCATGTGCTTGAGTTTTTTGAAACTATGGGATTTAAATGTCCTAAGAGGAAAGGCATTGCTGACTTCCTACAAGAGGTGACATCAAGGAAAGATCAGGAGCAATATTGGGAAAGGAAAGAGGATCCCTACAGTTTCGTTACAGTTAAGAAATTTGTTGAGGGATTTGAATCATTCCATGTGGGACAAAGACTTGGGGAGGAACTTTCAATTCCATTTGACAAAAGAAAGAGCCACCCGGCAGCTTTAACAACGAAAAAGTATGGTGCTAAAAAGGGAGAATTATTGAAAGCTTGCATGTCAAGGCAACTTTTGCTGATAAAGAGGAATTCCTTTGTCTTTTACTTCAAGTTCACCCAAATTACAATTATGGCATTGATTAGCATGACAATGTTTCTACGAACCAAGATGCACCACAGCTCAATAAATGATGCAGTAATTTATATGGGTGCTATGTTCTTCGCCAATGTCATAGTTATGTTTAATGGGATGTCAGAGATTTCAATGACCATTTTAAAGCTTCCTGTCTTTTACAAGCAAAGGGACTTTTTCTTCTTCCCTTCATGGGCATATGGTCTTCCAGCATGGATTCTCCAAATACCTATATCATTTGTAGAAGTAGCAGTTTGGGTGTTCATGACCTACTACGTGATCGGATATGATCCAAATGTTGGACGGTTTCTCAAGCAATATATCCTCTTCTTGTTTGTTAACCAGATGGCTTCCGGTTTATTTCGTACAATTGGAGCATTGTGTAGAGACTTGGTTGTTGCTAACACTTTGGGGTCATTTGCACTGCTCATACTTTTCACATTAAGTGGCTTTGTTCTCTCTAAAGATGATATTAACAAGGGGTGGATTTGGGGTTACTGGAGTTCACCTCTGATGTACAGTCAGAATGCAATTGTAGTTAATGAGTTACTTGGGAAGAGCTGGAGACATGTACTGCCAAACTCAACAATATCTGTAGGAGTTGCAGCTTTAGAGTACCGCGGGTTCTTTACACACGCGTATTGGTATTGGCTAGGAGTTGGGGCACTGATTGGATTCTCATTGCTATTCAACATTTTTTATGTTCTAGCTCTCTCCTACCTAAACCCACTTGGCAAAATTCAGGCTGTTAAATCAGAAGATTCTGGGAGGATTGCAGAGGAAAGTAGGTCAAGTCAACCAACCACGTCAGATAGTATGAATACAGAAGTTTCTGCGGAGGCTATTAACAGAGGGAAACGAGGAATGGTTCTTCCATTTGAACCACATTCCATAACCTTTGATGAAATCACATACTCAGTGGACATGCCACAGGAAATGAAGATGGAGGGTGTTGTAGAGGAAAAGTTAGTTCTTCTGAAGGGTGTGAGCGGTTCCTTCAGGCCAGGTGTTTTAACAGCTCTTATGGGTGTAAGTGGTGCTGGTAAAACGACTCTCATGGATGTACTGGCTGGTAGGAAAACTGGTGGATATATTGAAGGAGACATAAAAATTTCCGGGTACCCAAAGAAGCAAGAAACATTTGCTCGGATTTCTGGATATTGTGAGCAAAATGACATTCACTCCCCTCATGTTACTGTCTACGAGTCAGTGCTCTACTCAGCATGGCTTCGTTTGCCACCTGAAGTTACATCTGAAACCAAAAAGGTGTTCATTGAGGAAGTGATGGAACTTGTGGAACTTAATCCATTAAGGCAAGCACTTGTTGGGTTGCCTGGTATCAATGGTCTTTCAACTGAGCAGCGCAAGAGGCTGACTATCGCAGTTGAGCTAGTGGCGAATCCCTCGGTAATATTCATGGATGAACCAACTTCGGGGTTAGATGCAAGAGCTGCTGCAATTGTCATGAGAACAGTTAGGAACACAGTGGATACTGGTAGAACAGTTGTGTGCACCATCCATCAGCCTAGCATTGACATTTTTGAATCTTTTGATGAGCTACTGCTACTGAAGCGGGGAGGACAAGAAATTTATGTTGGTCCATTAGGTCGCCATTCTTGCAATCTAATCAAATATTTTGAGGAAATTGAAGGAGTCTGTAAAATAAAAGATGGTTACAATCCAGCAACATGGATGTTGGATGTTTCCACTGCAGCACAAGAATTAGCTTTGGGGATTGATTTTGCTCATGTTTACAAAAACTCAGAACTATACAGGAGAAATAAGCAACTCATTATAGAATACAGCACGCCTTCTCCTTCTTCAGAGGAACTCTCTTTCCCTACTCGATACTCACAACCGTTTCTCATCCAATATATGGCTTGCTTGTGGAAACAACATTGGTCATATTGGCGTAACCCATCGTACAATGCAGTAAGACTTCTCTTCACAATAGCCATAGCATTGGTGTTTGGGACAATGTTCTGGAATCTTGGCTCCAAAACGAATAGACAACAAGATCTGTTTAATGCAATGGGCTGTATGTTCACAGCTGTTATCTTTCTCGGGGTCCAAAATGCAACATCTGTGCAACCTATAGTTGCTATTGAAAGAACAGTCTTTTACAGAGAAAAAGCTGCAGGGATGTATTCAGCCTTGGCTTATGCATTTGCACAGGTTACGATTGAGCTACCGTATATTTTGGTACAAGCTGTGGTTTATGGAGTCATAACTTATCTAATGATCGGATTTGAGAGAACTTTTGTTAAAATCTTTTGGTACATATTCTTCATGTTCTTCACATTGGCGTACTTCACATTTTATGGCATGATGGCTGTGGCGGTTACTCCAAACCATCACATAGCTACTATTGTTTCCAGTGCATTTTATGCAATATGGATGCTCTTTTCTGGTTTTCTTATTCCACGACCGAGGATTCCCATATGGTGGAGATGGTACTACTGGGCATGTCCAATAGCTTGGACATTGTATGGATTGATTACATCACAGTTTGGAGATGTTGATGATATGCTCGAAAATGGTGAAACAGTGAAACAGTTTTTGAGAGGTTATTTCGGTTTCAAACATGATTTTCTGGGAGTTGTTGCAGTAGGGCTTGTTGGGTATGCAGTGCTCTTTGCATTCATCTTTGCCTTTTCTATAAGGGCGTTTAACTTCCAAAAGCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009987 GO:0010494 GO:0010603 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0032991 GO:0033043 GO:0034063 GO:0034622 GO:0035770 GO:0036464 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051128 GO:0065003 GO:0065007 GO:0070925 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1902115 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LsmAD PAM2 SM-ATX

Protein Analysis

1422

Amino Acids

160.25

Weight (kDa)

7.99

Isoelectric Point (pI)

39.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_trans_N	PF14510	90 - 136	3.3e-06	ABC-transporter N-terminal
ABC_tran	PF00005	162 - 343	1.8e-15	ABC transporter
ABC2_membrane	PF01061	498 - 710	4.7e-45	ABC-2 type transporter
PDR_assoc	PF08370	715 - 777	4.1e-25	Plant PDR ABC transporter associated
ABC_tran	PF00005	853 - 1005	4.5e-21	ABC transporter
ABC2_membrane	PF01061	1151 - 1364	1.5e-61	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54170 AT3G14010 AT3G14010 AT3G14010 AT3G14010 AT3G14010
fragaria_vesca	FvH4_6g34380 FvH4_6g34380 FvH4_6g34380 FvH4_6g34380 FvH4_6g34380 FvH4_6g34380 FvH4_6g34380
malus_domestica	MD09G1186100.v1.1 MD17G1171000.v1.1
prunus_persica	Prupe.7G067500_v2.0.a1 Prupe.7G067500_v2.0.a1 Prupe.7G067500_v2.0.a1
pyrus_communis	pycom09g10330 pycom12419g00200 pycom12419g00210
rosa_chinensis	RchiOBHm_Chr2g0110201 RchiOBHm_Chr2g0144721
rosa_laevigata	RLG00000020103
rosa_multiflora	Rmu_co8157946.1_g000001 Rmu_sc0013504.1_g000008 Rmu_sc0020351.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101040 Rroxscaffold_3G00222660 Rroxscaffold_7G00205460
rosa_rugosa	Rorug02G0389100 Rorug02G0389100 Rorug02G0389200 Rorug02G0389300
rosa_samantha	Rh2AG440900 Rh2BG451300 Rh2CG220200 Rh2CG428200 Rh2DG461300 Rh3DG266300
rosa_wichuraiana	Rw2G021150 Rw2G036070 Rw7G020140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	141, 506, 624
AasI	GACNNNNNNGTC	1 cut(s)	827
Acc65I	GGTACC	1 cut(s)	2700
AccB1I	GGYRCC	1 cut(s)	2700
AccB7I	CCANNNNNTGG	4 cut(s)	209, 1880, 3457, 4026
AccBSI	CCGCTC	1 cut(s)	2571
AccI	GTMKAC	3 cut(s)	160, 451, 2781
AccII	CGCG	2 cut(s)	2202, 2219
AccIII	TCCGGA	1 cut(s)	956
AciI	CCGC	6 cut(s)	2200, 2202, 2417, 2571, 3154, 3920
AclWI	GGATC	6 cut(s)	584, 809, 942, 1328, 1341, 1865
AcoI	YGGCCR	2 cut(s)	628, 1183
AcsI	RAATTY	6 cut(s)	1072, 1361, 1537, 2319, 2691, 3168
AcuI	CTGAAG	7 cut(s)	279, 911, 2563, 2579, 2844, 3170, 3387
AfeI	AGCGCT	1 cut(s)	4265
AfiI	CCNNNNNNNGG	9 cut(s)	39, 209, 548, 1285, 1774, 1880, 3014, 3457, 4026
AflIII	ACRYGT	2 cut(s)	2149, 2217
AgeI	ACCGGT	1 cut(s)	1037
AjiI	CACGTC	1 cut(s)	2388
AjnI	CCWGG	5 cut(s)	426, 592, 1197, 2584, 2914
AjuI	GAANNNNNNNTTGG	6 cut(s)	215, 247, 2834, 2866, 3159, 3191
AloI	GAACNNNNNNTCC	2 cut(s)	3402, 3434
Alw21I	GWGCWC	3 cut(s)	2796, 3095, 4215
Alw26I	GTCTC	6 cut(s)	481, 710, 1136, 1962, 2140, 2676
Alw44I	GTGCAC	1 cut(s)	3091
AlwI	GGATC	6 cut(s)	584, 809, 942, 1328, 1341, 1865
Ama87I	CYCGRG	1 cut(s)	3644
Aor13HI	TCCGGA	1 cut(s)	956
Aor51HI	AGCGCT	1 cut(s)	4265
AoxI	GGCC	4 cut(s)	628, 723, 1183, 2582
ApaLI	GTGCAC	1 cut(s)	3091
ApeKI	GCWGC	9 cut(s)	665, 797, 1451, 2186, 2941, 3032, 3035, 3293, 3716
ApoI	RAATTY	6 cut(s)	1072, 1361, 1537, 2319, 2691, 3168
AsiGI	ACCGGT	1 cut(s)	1037
Asp718I	GGTACC	1 cut(s)	2700
AspLEI	GCGC	2 cut(s)	2946, 4266
AspS9I	GGNCC	5 cut(s)	536, 1001, 1202, 3179, 3649
AsuC2I	CCSGG	2 cut(s)	1448, 2698
AsuHPI	GGTGA	7 cut(s)	157, 877, 998, 1300, 1555, 2079, 4133
AsuNHI	GCTAGC	1 cut(s)	769
AvaI	CYCGRG	1 cut(s)	3644
AvaII	GGWCC	5 cut(s)	536, 1001, 1202, 3179, 3649
BaeGI	GKGCMC	2 cut(s)	2248, 3095
BaeI	ACNNNNGTAYC	2 cut(s)	912, 945
BalI	TGGCCA	2 cut(s)	630, 1185
BamHI	GGATCC	1 cut(s)	1333
BanI	GGYRCC	1 cut(s)	2700
BarI	GAAGNNNNNNTAC	2 cut(s)	3851, 3883
BauI	CACGAG	1 cut(s)	1206
BbsI	GAAGAC	4 cut(s)	96, 267, 823, 1778
Bbv12I	GWGCWC	3 cut(s)	2796, 3095, 4215
BbvCI	CCTCAGC	1 cut(s)	169
BbvI	GCAGC	9 cut(s)	652, 809, 1463, 2198, 2953, 3019, 3022, 3305, 3703
BceAI	ACGGC	2 cut(s)	280, 1125
BciT130I	CCWGG	5 cut(s)	428, 594, 1199, 2586, 2916
BciVI	GTATCC	1 cut(s)	3064
BcnI	CCSGG	2 cut(s)	1448, 2698
BcoDI	GTCTC	6 cut(s)	481, 710, 1136, 1962, 2140, 2676
BfaI	CTAG	7 cut(s)	122, 513, 770, 2234, 2288, 2972, 3108
BfmI	CTRYAG	5 cut(s)	1339, 2175, 3291, 3675, 3717
BfoI	RGCGCY	1 cut(s)	4267
BfuI	GTATCC	1 cut(s)	3064
BglII	AGATCT	1 cut(s)	3598
BisI	GCNGC	9 cut(s)	666, 798, 1452, 2187, 2942, 3033, 3036, 3294, 3717
BlpI	GCTNAGC	1 cut(s)	774
BlsI	GCNGC	9 cut(s)	667, 799, 1453, 2188, 2943, 3034, 3037, 3295, 3718
Bme1390I	CCNGG	7 cut(s)	428, 594, 1199, 1448, 2586, 2698, 2916
Bme18I	GGWCC	5 cut(s)	536, 1001, 1202, 3179, 3649
BmeT110I	CYCGRG	1 cut(s)	3644
BmgBI	CACGTC	1 cut(s)	2388
BmgT120I	GGNCC	5 cut(s)	536, 1001, 1202, 3179, 3649
BmiI	GGNNCC	8 cut(s)	47, 537, 1203, 1335, 2575, 2702, 3577, 3650
BmrFI	CCNGG	7 cut(s)	428, 594, 1199, 1448, 2586, 2698, 2916
BmrI	ACTGGG	1 cut(s)	4051
BmsI	GCATC	7 cut(s)	358, 728, 981, 1608, 1630, 3013, 3969
BmtI	GCTAGC	1 cut(s)	773
BmuI	ACTGGG	1 cut(s)	4051
BoxI	GACNNNNGTC	1 cut(s)	473
BpiI	GAAGAC	4 cut(s)	96, 267, 823, 1778
BplI	GAGNNNNNCTC	4 cut(s)	2074, 2106, 3398, 3430
BpmI	CTGGAG	3 cut(s)	1112, 2101, 2164
Bpu10I	CCTNAGC	1 cut(s)	169
Bpu1102I	GCTNAGC	1 cut(s)	774
BpuEI	CTTGAG	3 cut(s)	275, 1241, 1877
BpuMI	CCSGG	2 cut(s)	1448, 2698
BsaAI	YACGTR	1 cut(s)	1858
BsaBI	GATNNNNATC	1 cut(s)	1378
BsaJI	CCNNGG	9 cut(s)	49, 427, 631, 742, 1198, 2200, 2985, 3735, 4010
BsaWI	WCCGGW	3 cut(s)	956, 1037, 1934
BsaXI	ACNNNNNCTCC	4 cut(s)	2747, 2777, 3379, 3409
Bsc4I	CCNNNNNNNGG	9 cut(s)	39, 209, 548, 1285, 1774, 1880, 3014, 3457, 4026
Bse118I	RCCGGY	1 cut(s)	1037
Bse1I	ACTGG	9 cut(s)	174, 413, 909, 2084, 2652, 2668, 3079, 3957, 4046
Bse3DI	GCAATG	3 cut(s)	1266, 2261, 3618
Bse8I	GATNNNNATC	1 cut(s)	1378
BseAI	TCCGGA	1 cut(s)	956
BseBI	CCWGG	5 cut(s)	428, 594, 1199, 2586, 2916
BseDI	CCNNGG	9 cut(s)	49, 427, 631, 742, 1198, 2200, 2985, 3735, 4010
BseGI	GGATG	9 cut(s)	1704, 2647, 3007, 3096, 3279, 3286, 3447, 3729, 3984
BseJI	GATNNNNATC	1 cut(s)	1378
BseLI	CCNNNNNNNGG	9 cut(s)	39, 209, 548, 1285, 1774, 1880, 3014, 3457, 4026
BseMI	GCAATG	3 cut(s)	1266, 2261, 3618
BseMII	CTCAG	9 cut(s)	140, 183, 460, 765, 1191, 2511, 2814, 2928, 3357
BseNI	ACTGG	9 cut(s)	174, 413, 909, 2084, 2652, 2668, 3079, 3957, 4046
BseRI	GAGGAG	2 cut(s)	1115, 1163
BseSI	GKGCMC	2 cut(s)	2248, 3095
BseXI	GCAGC	9 cut(s)	652, 809, 1463, 2198, 2953, 3019, 3022, 3305, 3703
Bsh1236I	CGCG	2 cut(s)	2202, 2219
Bsh1285I	CGRYCG	1 cut(s)	4010
BshFI	GGCC	4 cut(s)	630, 725, 1185, 2584
BshNI	GGYRCC	1 cut(s)	2700
BshTI	ACCGGT	1 cut(s)	1037
BsiEI	CGRYCG	1 cut(s)	4010
BsiHKAI	GWGCWC	3 cut(s)	2796, 3095, 4215
BsiHKCI	CYCGRG	1 cut(s)	3644
BsiSI	CCGG	6 cut(s)	549, 957, 1038, 1448, 1935, 2697
BslFI	GGGAC	4 cut(s)	915, 1407, 1766, 3568
BslI	CCNNNNNNNGG	9 cut(s)	39, 209, 548, 1285, 1774, 1880, 3014, 3457, 4026
BsmAI	GTCTC	6 cut(s)	481, 710, 1136, 1962, 2140, 2676
BsmFI	GGGAC	4 cut(s)	915, 1407, 1766, 3568
BsmI	GAATGC	2 cut(s)	2113, 4220
BsnI	GGCC	4 cut(s)	630, 725, 1185, 2584
BsoBI	CYCGRG	1 cut(s)	3644
Bsp1286I	GDGCHC	4 cut(s)	2248, 2796, 3095, 4215
Bsp13I	TCCGGA	1 cut(s)	956
Bsp1407I	TGTACA	1 cut(s)	2097
Bsp1720I	GCTNAGC	1 cut(s)	774
Bsp19I	CCATGG	2 cut(s)	49, 631
BspACI	CCGC	6 cut(s)	2200, 2202, 2417, 2571, 3154, 3920
BspANI	GGCC	4 cut(s)	630, 725, 1185, 2584
BspCNI	CTCAG	9 cut(s)	141, 182, 459, 766, 1190, 2510, 2813, 2929, 3356
BspEI	TCCGGA	1 cut(s)	956
BspFNI	CGCG	2 cut(s)	2202, 2219
BspHI	TCATGA	3 cut(s)	834, 1845, 3045
BspLI	GGNNCC	8 cut(s)	47, 537, 1203, 1335, 2575, 2702, 3577, 3650
BspMAI	CTGCAG	2 cut(s)	3295, 3721
BspOI	GCTAGC	1 cut(s)	773
BspPI	GGATC	6 cut(s)	584, 809, 942, 1328, 1341, 1865
BspQI	GCTCTTC	1 cut(s)	2132
BspT107I	GGYRCC	1 cut(s)	2700
BsrBI	CCGCTC	1 cut(s)	2571
BsrDI	GCAATG	3 cut(s)	1266, 2261, 3618
BsrFI	RCCGGY	1 cut(s)	1037
BsrGI	TGTACA	1 cut(s)	2097
BsrI	ACTGG	9 cut(s)	174, 413, 909, 2084, 2652, 2668, 3079, 3957, 4046
BssAI	RCCGGY	1 cut(s)	1037
BssECI	CCNNGG	9 cut(s)	49, 427, 631, 742, 1198, 2200, 2985, 3735, 4010
BssNAI	GTATAC	2 cut(s)	161, 452
BssSI	CACGAG	1 cut(s)	1206
BssT1I	CCWWGG	4 cut(s)	49, 631, 742, 3735
Bst1107I	GTATAC	2 cut(s)	161, 452
Bst2BI	CACGAG	1 cut(s)	1206
Bst2UI	CCWGG	5 cut(s)	428, 594, 1199, 2586, 2916
Bst6I	CTCTTC	5 cut(s)	213, 781, 1913, 2132, 3530
BstAPI	GCANNNNNTGC	3 cut(s)	1522, 3032, 3968
BstAUI	TGTACA	1 cut(s)	2097
BstBAI	YACGTR	1 cut(s)	1858
BstC8I	GCNNGC	6 cut(s)	771, 1134, 1504, 2898, 3389, 3463
BstDSI	CCRYGG	3 cut(s)	49, 631, 2200
BstENI	CCTNNNNNAGG	1 cut(s)	1283
BstF5I	GGATG	9 cut(s)	1704, 2647, 3007, 3096, 3279, 3286, 3447, 3729, 3984
BstFNI	CGCG	2 cut(s)	2202, 2219
BstH2I	RGCGCY	1 cut(s)	4267
BstHHI	GCGC	2 cut(s)	2946, 4266
BstMAI	GTCTC	6 cut(s)	481, 710, 1136, 1962, 2140, 2676
BstMCI	CGRYCG	1 cut(s)	4010
BstMWI	GCNNNNNNNGC	9 cut(s)	731, 775, 1522, 2815, 2950, 3032, 3151, 3198, 3968
BstNI	CCWGG	5 cut(s)	428, 594, 1199, 2586, 2916
BstNSI	RCATGY	5 cut(s)	1217, 1510, 2153, 2509, 4050
BstPAI	GACNNNNGTC	1 cut(s)	473
BstSCI	CCNGG	7 cut(s)	426, 592, 1197, 1446, 2584, 2696, 2914
BstSFI	CTRYAG	5 cut(s)	1339, 2175, 3291, 3675, 3717
BstSLI	GKGCMC	2 cut(s)	2248, 3095
BstUI	CGCG	2 cut(s)	2202, 2219
BstV1I	GCAGC	9 cut(s)	652, 809, 1463, 2198, 2953, 3019, 3022, 3305, 3703
BstV2I	GAAGAC	4 cut(s)	96, 267, 823, 1778
BstX2I	RGATCY	2 cut(s)	1333, 3598
BstXI	CCANNNNNNTGG	3 cut(s)	3270, 3544, 4059
BstYI	RGATCY	2 cut(s)	1333, 3598
BstZ17I	GTATAC	2 cut(s)	161, 452
BsuI	GTATCC	1 cut(s)	3064
BsuRI	GGCC	4 cut(s)	630, 725, 1185, 2584
BtgI	CCRYGG	3 cut(s)	49, 631, 2200
BtrI	CACGTC	1 cut(s)	2388
BtsCI	GGATG	9 cut(s)	1704, 2647, 3007, 3096, 3279, 3286, 3447, 3729, 3984
BtsI	GCAGTG	4 cut(s)	621, 2003, 3288, 4215
Cac8I	GCNNGC	6 cut(s)	771, 1134, 1504, 2898, 3389, 3463
CciI	TCATGA	3 cut(s)	834, 1845, 3045
CfoI	GCGC	2 cut(s)	2946, 4266
Cfr10I	RCCGGY	1 cut(s)	1037
Cfr13I	GGNCC	5 cut(s)	536, 1001, 1202, 3179, 3649
Cfr42I	CCGCGG	1 cut(s)	2203
CseI	GACGC	1 cut(s)	71
CspAI	ACCGGT	1 cut(s)	1037
CspCI	CAANNNNNGTGG	2 cut(s)	478, 513
DraI	TTTAAA	2 cut(s)	1246, 1725
DrdI	GACNNNNNNGTC	1 cut(s)	827
DseDI	GACNNNNNNGTC	1 cut(s)	827
EaeI	YGGCCR	2 cut(s)	628, 1183
Eam1104I	CTCTTC	5 cut(s)	213, 781, 1913, 2132, 3530
EarI	CTCTTC	5 cut(s)	213, 781, 1913, 2132, 3530
Eco130I	CCWWGG	4 cut(s)	49, 631, 742, 3735
Eco32I	GATATC	1 cut(s)	1032
Eco47I	GGWCC	5 cut(s)	536, 1001, 1202, 3179, 3649
Eco47III	AGCGCT	1 cut(s)	4265
Eco57I	CTGAAG	7 cut(s)	279, 911, 2563, 2579, 2844, 3170, 3387
Eco88I	CYCGRG	1 cut(s)	3644
EcoNI	CCTNNNNNAGG	1 cut(s)	1283
EcoO109I	RGGNCCY	2 cut(s)	536, 1202
EcoRI	GAATTC	2 cut(s)	1072, 1537
EcoRII	CCWGG	5 cut(s)	426, 592, 1197, 2584, 2914
EcoRV	GATATC	1 cut(s)	1032
EcoT14I	CCWWGG	4 cut(s)	49, 631, 742, 3735
EcoT22I	ATGCAT	2 cut(s)	693, 3748
ErhI	CCWWGG	4 cut(s)	49, 631, 742, 3735
FalI	AAGNNNNNCTT	2 cut(s)	373, 405
FaqI	GGGAC	4 cut(s)	915, 1407, 1766, 3568
FauI	CCCGC	2 cut(s)	2195, 3147
FauNDI	CATATG	2 cut(s)	1780, 4022
FblI	GTMKAC	3 cut(s)	160, 451, 2781
Fnu4HI	GCNGC	9 cut(s)	666, 798, 1452, 2187, 2942, 3033, 3036, 3294, 3717
FokI	GGATG	9 cut(s)	1711, 2654, 3014, 3083, 3286, 3293, 3434, 3736, 3991
Fsp4HI	GCNGC	9 cut(s)	666, 798, 1452, 2187, 2942, 3033, 3036, 3294, 3717
FspBI	CTAG	7 cut(s)	122, 513, 770, 2234, 2288, 2972, 3108
GlaI	GCGC	2 cut(s)	2945, 4265
GluI	GCNGC	9 cut(s)	666, 798, 1452, 2187, 2942, 3033, 3036, 3294, 3717
GsuI	CTGGAG	3 cut(s)	1112, 2101, 2164
HaeII	RGCGCY	1 cut(s)	4267
HaeIII	GGCC	4 cut(s)	630, 725, 1185, 2584
HapII	CCGG	6 cut(s)	549, 957, 1038, 1448, 1935, 2697
HgaI	GACGC	1 cut(s)	71
HhaI	GCGC	2 cut(s)	2946, 4266
Hin6I	GCGC	2 cut(s)	2944, 4264
HinP1I	GCGC	2 cut(s)	2944, 4264
HincII	GTYRAC	2 cut(s)	1921, 2378
HindII	GTYRAC	2 cut(s)	1921, 2378
HindIII	AAGCTT	5 cut(s)	128, 369, 584, 1500, 1727
HpaI	GTTAAC	1 cut(s)	1921
HpaII	CCGG	6 cut(s)	549, 957, 1038, 1448, 1935, 2697
HphI	GGTGA	7 cut(s)	157, 877, 998, 1300, 1555, 2079, 4133
HpyAV	CCTTC	9 cut(s)	832, 848, 1779, 2554, 2587, 2672, 3224, 3402, 3408
HpyCH4IV	ACGT	3 cut(s)	870, 1857, 2387
HpyF10VI	GCNNNNNNNGC	9 cut(s)	731, 775, 1522, 2815, 2950, 3032, 3151, 3198, 3968
HpySE526I	ACGT	3 cut(s)	870, 1857, 2387
HspAI	GCGC	2 cut(s)	2944, 4264
Kpn2I	TCCGGA	1 cut(s)	956
KpnI	GGTACC	1 cut(s)	2704
KspAI	GTTAAC	1 cut(s)	1921
KspI	CCGCGG	1 cut(s)	2203
LguI	GCTCTTC	1 cut(s)	2132
LmnI	GCTCC	4 cut(s)	611, 1309, 1955, 3581
Lsp1109I	GCAGC	9 cut(s)	652, 809, 1463, 2198, 2953, 3019, 3022, 3305, 3703
LweI	GCATC	7 cut(s)	358, 728, 981, 1608, 1630, 3013, 3969
MaeI	CTAG	7 cut(s)	122, 513, 770, 2234, 2288, 2972, 3108
MaeII	ACGT	3 cut(s)	870, 1857, 2387
MbiI	CCGCTC	1 cut(s)	2571
MfeI	CAATTG	4 cut(s)	330, 1950, 2112, 3039
MflI	RGATCY	2 cut(s)	1333, 3598
MhlI	GDGCHC	4 cut(s)	2248, 2796, 3095, 4215
MlsI	TGGCCA	2 cut(s)	630, 1185
MluI	ACGCGT	1 cut(s)	2217
MluNI	TGGCCA	2 cut(s)	630, 1185
MlyI	GAGTC	4 cut(s)	2626, 2795, 3243, 3813
MmeI	TCCRAC	5 cut(s)	292, 730, 979, 1861, 3258
Mox20I	TGGCCA	2 cut(s)	630, 1185
Mph1103I	ATGCAT	2 cut(s)	693, 3748
MroI	TCCGGA	1 cut(s)	956
MscI	TGGCCA	2 cut(s)	630, 1185
MslI	CAYNNNNRTG	3 cut(s)	54, 1598, 1685
Msp20I	TGGCCA	2 cut(s)	630, 1185
MspA1I	CMGCKG	2 cut(s)	2202, 3632
MspI	CCGG	6 cut(s)	549, 957, 1038, 1448, 1935, 2697
MspR9I	CCNGG	7 cut(s)	428, 594, 1199, 1448, 2586, 2698, 2916
MunI	CAATTG	4 cut(s)	330, 1950, 2112, 3039
Mva1269I	GAATGC	2 cut(s)	2113, 4220
MvaI	CCWGG	5 cut(s)	428, 594, 1199, 2586, 2916
MvnI	CGCG	2 cut(s)	2202, 2219
MwoI	GCNNNNNNNGC	9 cut(s)	731, 775, 1522, 2815, 2950, 3032, 3151, 3198, 3968
NciI	CCSGG	2 cut(s)	1448, 2698
NcoI	CCATGG	2 cut(s)	49, 631
NdeI	CATATG	2 cut(s)	1780, 4022
NheI	GCTAGC	1 cut(s)	769
NlaIV	GGNNCC	8 cut(s)	47, 537, 1203, 1335, 2575, 2702, 3577, 3650
NmeAIII	GCCGAG	1 cut(s)	410
NmuCI	GTSAC	3 cut(s)	616, 874, 1288
NsiI	ATGCAT	2 cut(s)	693, 3748
NspI	RCATGY	5 cut(s)	1217, 1510, 2153, 2509, 4050
PagI	TCATGA	3 cut(s)	834, 1845, 3045
PciI	ACATGT	1 cut(s)	2149
PciSI	GCTCTTC	1 cut(s)	2132
PctI	GAATGC	2 cut(s)	2113, 4220
PflMI	CCANNNNNTGG	4 cut(s)	209, 1880, 3457, 4026
PinAI	ACCGGT	1 cut(s)	1037
PkrI	GCNGC	9 cut(s)	667, 799, 1453, 2188, 2943, 3034, 3037, 3295, 3718
PleI	GAGTC	4 cut(s)	2626, 2794, 3242, 3812
PpsI	GAGTC	4 cut(s)	2626, 2794, 3242, 3812
Ppu21I	YACGTR	1 cut(s)	1858
PpuMI	RGGWCCY	2 cut(s)	536, 1202
PscI	ACATGT	1 cut(s)	2149
PshAI	GACNNNNGTC	1 cut(s)	473
PsiI	TTATAA	3 cut(s)	141, 506, 624
Psp5II	RGGWCCY	2 cut(s)	536, 1202
Psp6I	CCWGG	5 cut(s)	426, 592, 1197, 2584, 2914
PspGI	CCWGG	5 cut(s)	426, 592, 1197, 2584, 2914
PspN4I	GGNNCC	8 cut(s)	47, 537, 1203, 1335, 2575, 2702, 3577, 3650
PspPI	GGNCC	5 cut(s)	536, 1001, 1202, 3179, 3649
PspPPI	RGGWCCY	2 cut(s)	536, 1202
PsrI	GAACNNNNNNTAC	2 cut(s)	2189, 2221
PstI	CTGCAG	2 cut(s)	3295, 3721
PsuI	RGATCY	2 cut(s)	1333, 3598
PvuII	CAGCTG	1 cut(s)	3632
RseI	CAYNNNNRTG	3 cut(s)	54, 1598, 1685
SacII	CCGCGG	1 cut(s)	2203
SapI	GCTCTTC	1 cut(s)	2132
SatI	GCNGC	9 cut(s)	666, 798, 1452, 2187, 2942, 3033, 3036, 3294, 3717
Sau96I	GGNCC	5 cut(s)	536, 1001, 1202, 3179, 3649
SchI	GAGTC	4 cut(s)	2626, 2795, 3243, 3813
ScrFI	CCNGG	7 cut(s)	428, 594, 1199, 1448, 2586, 2698, 2916
SduI	GDGCHC	4 cut(s)	2248, 2796, 3095, 4215
SfaNI	GCATC	7 cut(s)	358, 728, 981, 1608, 1630, 3013, 3969
SfcI	CTRYAG	5 cut(s)	1339, 2175, 3291, 3675, 3717
Sfr303I	CCGCGG	1 cut(s)	2203
SgrBI	CCGCGG	1 cut(s)	2203
SinI	GGWCC	5 cut(s)	536, 1001, 1202, 3179, 3649
SmiI	ATTTAAAT	1 cut(s)	1246
SmiMI	CAYNNNNRTG	3 cut(s)	54, 1598, 1685
SmlI	CTYRAG	3 cut(s)	290, 1220, 1892
SmoI	CTYRAG	3 cut(s)	290, 1220, 1892
SsiI	CCGC	6 cut(s)	2200, 2202, 2417, 2571, 3154, 3920
SspI	AATATT	4 cut(s)	1090, 1316, 2994, 3215
SspMI	CTAG	7 cut(s)	122, 513, 770, 2234, 2288, 2972, 3108
StyD4I	CCNGG	7 cut(s)	426, 592, 1197, 1446, 2584, 2696, 2914
StyI	CCWWGG	4 cut(s)	49, 631, 742, 3735
SwaI	ATTTAAAT	1 cut(s)	1246
TaiI	ACGT	3 cut(s)	873, 1860, 2390
TaqI	TCGA	5 cut(s)	71, 340, 1052, 3427, 4113
TaqII	GACCGA	1 cut(s)	4024
TatI	WGTACW	3 cut(s)	2097, 2152, 2644
TseFI	GTSAC	3 cut(s)	616, 874, 1288
TseI	GCWGC	9 cut(s)	665, 797, 1451, 2186, 2941, 3032, 3035, 3293, 3716
Tsp45I	GTSAC	3 cut(s)	616, 874, 1288
Van91I	CCANNNNNTGG	4 cut(s)	209, 1880, 3457, 4026
VneI	GTGCAC	1 cut(s)	3091
VpaK11BI	GGWCC	5 cut(s)	536, 1001, 1202, 3179, 3649
XagI	CCTNNNNNAGG	1 cut(s)	1283
XapI	RAATTY	6 cut(s)	1072, 1361, 1537, 2319, 2691, 3168
XceI	RCATGY	5 cut(s)	1217, 1510, 2153, 2509, 4050
XcmI	CCANNNNNNNNNTGG	1 cut(s)	565
XmiI	GTMKAC	3 cut(s)	160, 451, 2781
XspI	CTAG	7 cut(s)	122, 513, 770, 2234, 2288, 2972, 3108
Zsp2I	ATGCAT	2 cut(s)	693, 3748

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.