Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002232

Physical Location & Seq

Genomic Coordinates Reverse (-)

65190647 .. 65199108

Gene Structure 8462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG440900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1914 bp

ATGAATATGCAACCAGCTGTCCACTCTAAATCATCTGCTAATGGTTTTGGTCGTCGAAGAAGTGAAAGAGAAGGGGGTGCTAGGGTCGAGAATAAGTCGCAGTCGGGGAAGGCAAACCATAGCAAATCAAGCAGCAAAGCTGGTAACTATGAGAGTCCTTCGCGTGATCGTGTAGTATTTTTAACTACATGTCTTATTGGACATCATGTGGAGGTTCAGGTGAAAAATGGATCCATATACACCGGAATATTTCATGCAACGAATGCTGATAAAGATTTTGGAATCATATTGAAAATGGCTCGCATGATAAAGGATGGTTCCTTACGAGGGCAGAAGTCTATGTCAGATTCAGTTAGCAAGGCTCCTTTAAAGACATTAATTATTCCTTCCAAAGAACTTGTGCAAGTGATAGCAAAGGATGTCTCAATAAGTAGAGAGGGATTGTTGAGTGAGGTCCAGCATGAAAAACATCAGGAGCTTATGCTAGATTCCTCCATATCACAATCCCGCCGTGGTGAGATGGAGAGAGAGCTGGAGCCGTGGATCCCTGATGAAGATGATCCACGTCCTGAGTTGGAAAATATATTTGATGGACATTGGAATAGGAACTGGGATCAATTTGAAACAAATGAAGCATTATTTGGGGTAAAAAGCACATTTGATGAGGAACTTTACACAACAAAGCTTGAGAAAGGTCCTAAAATGAGAGAGCTGGAAAGGGAAGCTTTACGAATAGCAAGAGAAATTGAGGGTGAGGATACCCAGGATCTGCATGCAGCAGAGGAAAGAGGCATGCAGCCGTATGAAAATTTTGATATTGATGAGGAGACCAGATACTCCTCTGTTTATCGGGGTGAGGTAGTTGATGATAGTGGATATGATGAAGATGAGGATATTTTATTGGATTCACGTAATACTGAGACCTTTGGAGGTTCTCCTGGTTCTGAGCAAAAGAGTTCAATCGATTGGACCAGTGGAAAAGGCAACCATGGAGTTCAGGTGCCTTCAAGCTCTTCATCTGTGGATTACACACACTATTCTGAATCAAATGTCGCCCCAGAGTTATATCGTTCTGGATCTTATGATCATGCTAGGCAGCTGGCATCAGAACCACCTAATAAAAGTTTTGCCAGTACAGCCGGTGAAAGCAGTGAACATGGAGATACCGACAGTGCTACTGACTCTGTAGAAAAGCATATGCTGGCCGGGGACAGTCAAACGTCAAAACCAGATGATTCAGAGAAGACAAAAAATGCATTTGATACAGATGTGCTATCCTCAAATGCCACCTCTTATGCTCCACCTCCTGTTTCATCAAAAGGTCAGGACAAGATGAGTTCTAGTGAACTGGAGGGTCCAGTGACGGGTAAAGCACATGCACAAACACACACAGTAAATACTCATGGACGACCTGGTAGTTCTGCATCTTCCAATTCAGAATGTGCAGGTGTTGTTTCTGCTTCTGGTGGCCGTGGTTTATCACCAAGCTCATCGCTTGGTTCCTTGTCCTCTGAAAAGTCGACATTGAATCCCAATGCTAAGGAATTCAAATTCAACCCACATGCAAAGAGTTTCGTTCCATCTCAAACCCCTGTTAGGCCTCCTTCCCCAGTGTCGGATGGTTCCTTCTATTATCCAACTAACATGCCTGCTGTACCACATATGCCTGGCATGCCTGTTGGCATTGGAGTAAGTACTTTGATGCTTTGTTTAGTTCTTGCACCTTTATTCACTCTGTTTTTTTTTCTTGGTACGGACTTGTTTGAGATATGGTGCCATATGGATTTTATGTCTGCTAGACAATCTATGATTGTGTTCATAATTCACTACCAGGCATCTTACCCAGACTTGGGACCTGGAGAAGCAACTAGAAATTCAACTGTTTTCTTATTAAATTTTAATTTTAATTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009987 GO:0010494 GO:0010603 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0032991 GO:0033043 GO:0034063 GO:0034622 GO:0035770 GO:0036464 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051128 GO:0065003 GO:0065007 GO:0070925 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1902115 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LsmAD PAM2 SM-ATX

Protein Analysis

637

Amino Acids

69.94

Weight (kDa)

5.22

Isoelectric Point (pI)

52.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SM-ATX	PF14438	55 - 139	1.4e-27	Ataxin 2 SM domain
LsmAD	PF06741	214 - 284	1.1e-24	LsmAD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54170 AT3G14010 AT3G14010 AT3G14010 AT3G14010 AT3G14010
fragaria_vesca	FvH4_6g34380 FvH4_6g34380 FvH4_6g34380 FvH4_6g34380 FvH4_6g34380 FvH4_6g34380 FvH4_6g34380
malus_domestica	MD09G1186100.v1.1 MD17G1171000.v1.1
prunus_persica	Prupe.7G067500_v2.0.a1 Prupe.7G067500_v2.0.a1 Prupe.7G067500_v2.0.a1
pyrus_communis	pycom09g10330 pycom12419g00200 pycom12419g00210
rosa_chinensis	RchiOBHm_Chr2g0110201 RchiOBHm_Chr2g0144721
rosa_laevigata	RLG00000020103
rosa_multiflora	Rmu_co8157946.1_g000001 Rmu_sc0013504.1_g000008 Rmu_sc0020351.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101040 Rroxscaffold_3G00222660 Rroxscaffold_7G00205460
rosa_rugosa	Rorug02G0389100 Rorug02G0389100 Rorug02G0389200 Rorug02G0389300
rosa_samantha	Rh2AG440900 Rh2BG451300 Rh2CG220200 Rh2CG428200 Rh2DG461300 Rh3DG266300
rosa_wichuraiana	Rw2G021150 Rw2G036070 Rw7G020140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1436
Acc36I	ACCTGC	1 cut(s)	1436
AccB1I	GGYRCC	2 cut(s)	1000, 1773
AccI	GTMKAC	1 cut(s)	1520
AccII	CGCG	1 cut(s)	163
AciI	CCGC	1 cut(s)	508
AclWI	GGATC	8 cut(s)	225, 238, 538, 551, 554, 621, 774, 1084
AcoI	YGGCCR	2 cut(s)	1203, 1468
AcsI	RAATTY	5 cut(s)	808, 1544, 1550, 1873, 1894
AfaI	GTAC	4 cut(s)	1135, 1656, 1696, 1753
AfiI	CCNNNNNNNGG	6 cut(s)	327, 1364, 1596, 1615, 1849, 1850
AflIII	ACRYGT	1 cut(s)	188
AgsI	TTSAA	8 cut(s)	292, 623, 960, 1008, 1528, 1549, 1555, 1878
AjiI	CACGTC	1 cut(s)	566
AjnI	CCWGG	6 cut(s)	762, 937, 1411, 1666, 1830, 1855
AjuI	GAANNNNNNNTTGG	2 cut(s)	624, 656
Alw26I	GTCTC	3 cut(s)	427, 821, 914
AlwI	GGATC	8 cut(s)	225, 238, 538, 551, 554, 621, 774, 1084
AlwNI	CAGNNNCTG	1 cut(s)	769
AoxI	GGCC	3 cut(s)	1203, 1468, 1598
ApeKI	GCWGC	4 cut(s)	132, 776, 796, 1096
ApoI	RAATTY	5 cut(s)	808, 1544, 1550, 1873, 1894
AseI	ATTAAT	1 cut(s)	377
AspS9I	GGNCC	5 cut(s)	454, 695, 969, 1355, 1853
AsuC2I	CCSGG	1 cut(s)	1207
AsuHPI	GGTGA	6 cut(s)	232, 527, 764, 866, 1154, 1473
AvaII	GGWCC	5 cut(s)	454, 695, 969, 1355, 1853
BaeI	ACNNNNGTAYC	2 cut(s)	1254, 1287
BamHI	GGATCC	2 cut(s)	230, 543
BanI	GGYRCC	2 cut(s)	1000, 1773
BbsI	GAAGAC	1 cut(s)	1250
BbvI	GCAGC	4 cut(s)	144, 788, 808, 1108
BccI	CCATC	5 cut(s)	308, 514, 584, 1588, 1613
BceAI	ACGGC	4 cut(s)	495, 523, 784, 1455
BciT130I	CCWGG	6 cut(s)	764, 939, 1413, 1668, 1832, 1857
BciVI	GTATCC	1 cut(s)	751
BclI	TGATCA	1 cut(s)	1084
BcnI	CCSGG	1 cut(s)	1207
BcoDI	GTCTC	3 cut(s)	427, 821, 914
BfaI	CTAG	7 cut(s)	81, 485, 1092, 1341, 1797, 1869, 1912
BfmI	CTRYAG	1 cut(s)	1185
BfuAI	ACCTGC	1 cut(s)	1436
BfuI	GTATCC	1 cut(s)	751
BisI	GCNGC	4 cut(s)	133, 777, 797, 1097
BlsI	GCNGC	4 cut(s)	134, 778, 798, 1098
BmcAI	AGTACT	1 cut(s)	1696
Bme1390I	CCNGG	7 cut(s)	764, 939, 1207, 1413, 1668, 1832, 1857
Bme18I	GGWCC	5 cut(s)	454, 695, 969, 1355, 1853
BmgBI	CACGTC	1 cut(s)	566
BmgT120I	GGNCC	5 cut(s)	454, 695, 969, 1355, 1853
BmrFI	CCNGG	7 cut(s)	764, 939, 1207, 1413, 1668, 1832, 1857
BmrI	ACTGGG	2 cut(s)	619, 1604
BmsI	GCATC	4 cut(s)	1112, 1433, 1692, 1844
BmuI	ACTGGG	2 cut(s)	619, 1604
BpiI	GAAGAC	1 cut(s)	1250
BpmI	CTGGAG	3 cut(s)	554, 1370, 1878
Bpu10I	CCTNAGC	1 cut(s)	1539
BpuEI	CTTGAG	1 cut(s)	707
BpuMI	CCSGG	1 cut(s)	1207
Bsa29I	ATCGAT	1 cut(s)	963
BsaAI	YACGTR	1 cut(s)	911
BsaI	GGTCTC	2 cut(s)	821, 914
BsaJI	CCNNGG	6 cut(s)	511, 539, 762, 988, 1206, 1471
BsaWI	WCCGGW	1 cut(s)	242
BsaXI	ACNNNNNCTCC	2 cut(s)	984, 1014
Bsc4I	CCNNNNNNNGG	6 cut(s)	327, 1364, 1596, 1615, 1849, 1850
Bse118I	RCCGGY	1 cut(s)	1139
Bse1I	ACTGG	6 cut(s)	614, 972, 1131, 1353, 1358, 1610
BseBI	CCWGG	6 cut(s)	764, 939, 1413, 1668, 1832, 1857
BseCI	ATCGAT	1 cut(s)	963
BseDI	CCNNGG	6 cut(s)	511, 539, 762, 988, 1206, 1471
BseGI	GGATG	3 cut(s)	319, 424, 1624
BseLI	CCNNNNNNNGG	6 cut(s)	327, 1364, 1596, 1615, 1849, 1850
BseMII	CTCAG	3 cut(s)	561, 909, 936
BseNI	ACTGG	6 cut(s)	614, 972, 1131, 1353, 1358, 1610
BseRI	GAGGAG	2 cut(s)	829, 839
BseXI	GCAGC	4 cut(s)	144, 788, 808, 1108
BsgI	GTGCAG	1 cut(s)	1464
Bsh1236I	CGCG	1 cut(s)	163
BshFI	GGCC	3 cut(s)	1205, 1470, 1600
BshNI	GGYRCC	2 cut(s)	1000, 1773
BshVI	ATCGAT	1 cut(s)	963
BsiSI	CCGG	3 cut(s)	243, 1140, 1206
BslFI	GGGAC	2 cut(s)	1223, 1866
BslI	CCNNNNNNNGG	6 cut(s)	327, 1364, 1596, 1615, 1849, 1850
BsmAI	GTCTC	3 cut(s)	427, 821, 914
BsmFI	GGGAC	2 cut(s)	1223, 1866
BsmI	GAATGC	1 cut(s)	268
BsnI	GGCC	3 cut(s)	1205, 1470, 1600
Bso31I	GGTCTC	2 cut(s)	821, 914
Bsp143I	GATC	8 cut(s)	166, 230, 543, 559, 613, 766, 1076, 1084
Bsp19I	CCATGG	1 cut(s)	988
BspACI	CCGC	1 cut(s)	508
BspANI	GGCC	3 cut(s)	1205, 1470, 1600
BspCNI	CTCAG	3 cut(s)	562, 910, 937
BspDI	ATCGAT	1 cut(s)	963
BspFNI	CGCG	1 cut(s)	163
BspMI	ACCTGC	1 cut(s)	1436
BspPI	GGATC	8 cut(s)	225, 238, 538, 551, 554, 621, 774, 1084
BspQI	GCTCTTC	1 cut(s)	1018
BspT107I	GGYRCC	2 cut(s)	1000, 1773
BspTNI	GGTCTC	2 cut(s)	821, 914
BsrFI	RCCGGY	1 cut(s)	1139
BsrI	ACTGG	6 cut(s)	614, 972, 1131, 1353, 1358, 1610
BssAI	RCCGGY	1 cut(s)	1139
BssECI	CCNNGG	6 cut(s)	511, 539, 762, 988, 1206, 1471
BssMI	GATC	8 cut(s)	166, 230, 543, 559, 613, 766, 1076, 1084
BssT1I	CCWWGG	1 cut(s)	988
Bst2UI	CCWGG	6 cut(s)	764, 939, 1413, 1668, 1832, 1857
Bst4CI	ACNGT	4 cut(s)	1172, 1214, 1393, 1882
Bst6I	CTCTTC	1 cut(s)	1018
BstAPI	GCANNNNNTGC	1 cut(s)	263
BstBAI	YACGTR	1 cut(s)	911
BstC8I	GCNNGC	7 cut(s)	301, 774, 794, 1101, 1203, 1650, 1673
BstDEI	CTNAG	4 cut(s)	570, 918, 945, 1539
BstDSI	CCRYGG	4 cut(s)	511, 539, 988, 1471
BstF5I	GGATG	3 cut(s)	319, 424, 1624
BstFNI	CGCG	1 cut(s)	163
BstKTI	GATC	8 cut(s)	169, 233, 546, 562, 616, 769, 1079, 1087
BstMAI	GTCTC	3 cut(s)	427, 821, 914
BstMBI	GATC	8 cut(s)	166, 230, 543, 559, 613, 766, 1076, 1084
BstMWI	GCNNNNNNNGC	4 cut(s)	129, 263, 1136, 1672
BstNI	CCWGG	6 cut(s)	764, 939, 1413, 1668, 1832, 1857
BstNSI	RCATGY	7 cut(s)	192, 776, 796, 1379, 1565, 1648, 1675
BstSCI	CCNGG	7 cut(s)	762, 937, 1205, 1411, 1666, 1830, 1855
BstSFI	CTRYAG	1 cut(s)	1185
BstUI	CGCG	1 cut(s)	163
BstV1I	GCAGC	4 cut(s)	144, 788, 808, 1108
BstV2I	GAAGAC	1 cut(s)	1250
BstX2I	RGATCY	4 cut(s)	230, 543, 766, 1076
BstYI	RGATCY	4 cut(s)	230, 543, 766, 1076
Bsu15I	ATCGAT	1 cut(s)	963
BsuI	GTATCC	1 cut(s)	751
BsuRI	GGCC	3 cut(s)	1205, 1470, 1600
BsuTUI	ATCGAT	1 cut(s)	963
BtgI	CCRYGG	4 cut(s)	511, 539, 988, 1471
BtgZI	GCGATG	1 cut(s)	1476
BtrI	CACGTC	1 cut(s)	566
BtsCI	GGATG	3 cut(s)	319, 424, 1624
BtsI	GCAGTG	1 cut(s)	1156
BtsIMutI	CAGTG	5 cut(s)	979, 1156, 1177, 1365, 1617
BveI	ACCTGC	1 cut(s)	1436
Cac8I	GCNNGC	7 cut(s)	301, 774, 794, 1101, 1203, 1650, 1673
CaiI	CAGNNNCTG	1 cut(s)	769
Cfr10I	RCCGGY	1 cut(s)	1139
Cfr13I	GGNCC	5 cut(s)	454, 695, 969, 1355, 1853
ClaI	ATCGAT	1 cut(s)	963
CsiI	ACCWGGT	1 cut(s)	1411
Csp6I	GTAC	4 cut(s)	1134, 1655, 1695, 1752
CviQI	GTAC	4 cut(s)	1134, 1655, 1695, 1752
DdeI	CTNAG	4 cut(s)	570, 918, 945, 1539
DpnI	GATC	8 cut(s)	168, 232, 545, 561, 615, 768, 1078, 1086
DpnII	GATC	8 cut(s)	166, 230, 543, 559, 613, 766, 1076, 1084
DraI	TTTAAA	1 cut(s)	369
EaeI	YGGCCR	2 cut(s)	1203, 1468
Eam1104I	CTCTTC	1 cut(s)	1018
EarI	CTCTTC	1 cut(s)	1018
Eco130I	CCWWGG	1 cut(s)	988
Eco147I	AGGCCT	1 cut(s)	1600
Eco31I	GGTCTC	2 cut(s)	821, 914
Eco47I	GGWCC	5 cut(s)	454, 695, 969, 1355, 1853
EcoO109I	RGGNCCY	2 cut(s)	695, 1853
EcoRI	GAATTC	1 cut(s)	1544
EcoRII	CCWGG	6 cut(s)	762, 937, 1411, 1666, 1830, 1855
EcoT14I	CCWWGG	1 cut(s)	988
EcoT22I	ATGCAT	1 cut(s)	1258
ErhI	CCWWGG	1 cut(s)	988
FalI	AAGNNNNNCTT	2 cut(s)	709, 741
FaqI	GGGAC	2 cut(s)	1223, 1866
FauI	CCCGC	1 cut(s)	515
FauNDI	CATATG	3 cut(s)	1197, 1662, 1779
FbaI	TGATCA	1 cut(s)	1084
FblI	GTMKAC	1 cut(s)	1520
Fnu4HI	GCNGC	4 cut(s)	133, 777, 797, 1097
FokI	GGATG	3 cut(s)	326, 431, 1631
Fsp4HI	GCNGC	4 cut(s)	133, 777, 797, 1097
FspBI	CTAG	7 cut(s)	81, 485, 1092, 1341, 1797, 1869, 1912
GluI	GCNGC	4 cut(s)	133, 777, 797, 1097
GsuI	CTGGAG	3 cut(s)	554, 1370, 1878
HaeIII	GGCC	3 cut(s)	1205, 1470, 1600
HapII	CCGG	3 cut(s)	243, 1140, 1206
HincII	GTYRAC	1 cut(s)	1521
HindII	GTYRAC	1 cut(s)	1521
HindIII	AAGCTT	2 cut(s)	683, 723
HinfI	GANTC	9 cut(s)	154, 282, 347, 488, 905, 1043, 1181, 1235, 1528
HpaII	CCGG	3 cut(s)	243, 1140, 1206
HphI	GGTGA	6 cut(s)	232, 527, 764, 866, 1154, 1473
Hpy166II	GTNNAC	4 cut(s)	22, 1154, 1346, 1521
Hpy188I	TCNGA	8 cut(s)	346, 946, 1042, 1108, 1240, 1438, 1513, 1618
Hpy188III	TCNNGA	5 cut(s)	88, 473, 569, 1074, 1325
Hpy8I	GTNNAC	4 cut(s)	22, 1154, 1346, 1521
Hpy99I	CGWCG	1 cut(s)	57
HpyAV	CCTTC	7 cut(s)	65, 103, 168, 396, 1014, 1614, 1636
HpyCH4III	ACNGT	4 cut(s)	1172, 1214, 1393, 1882
HpyCH4IV	ACGT	3 cut(s)	565, 910, 1220
HpyF10VI	GCNNNNNNNGC	4 cut(s)	129, 263, 1136, 1672
HpyF3I	CTNAG	4 cut(s)	570, 918, 945, 1539
HpySE526I	ACGT	3 cut(s)	565, 910, 1220
Ksp22I	TGATCA	1 cut(s)	1084
Kzo9I	GATC	8 cut(s)	166, 230, 543, 559, 613, 766, 1076, 1084
LguI	GCTCTTC	1 cut(s)	1018
LmnI	GCTCC	4 cut(s)	367, 475, 535, 1303
Lsp1109I	GCAGC	4 cut(s)	144, 788, 808, 1108
LweI	GCATC	4 cut(s)	1112, 1433, 1692, 1844
MabI	ACCWGGT	1 cut(s)	1411
MaeI	CTAG	7 cut(s)	81, 485, 1092, 1341, 1797, 1869, 1912
MaeII	ACGT	3 cut(s)	565, 910, 1220
MaeIII	GTNAC	2 cut(s)	143, 1360
MalI	GATC	8 cut(s)	168, 232, 545, 561, 615, 768, 1078, 1086
MboI	GATC	8 cut(s)	166, 230, 543, 559, 613, 766, 1076, 1084
MboII	GAAGA	6 cut(s)	69, 566, 896, 1005, 1255, 1419
MflI	RGATCY	4 cut(s)	230, 543, 766, 1076
MlyI	GAGTC	2 cut(s)	163, 1175
MmeI	TCCRAC	3 cut(s)	555, 1596, 1661
Mph1103I	ATGCAT	1 cut(s)	1258
MseI	TTAA	6 cut(s)	182, 368, 377, 1892, 1899, 1905
MspA1I	CMGCKG	2 cut(s)	17, 1099
MspI	CCGG	3 cut(s)	243, 1140, 1206
MspR9I	CCNGG	7 cut(s)	764, 939, 1207, 1413, 1668, 1832, 1857
Mva1269I	GAATGC	1 cut(s)	268
MvaI	CCWGG	6 cut(s)	764, 939, 1413, 1668, 1832, 1857
MvnI	CGCG	1 cut(s)	163
MwoI	GCNNNNNNNGC	4 cut(s)	129, 263, 1136, 1672
NciI	CCSGG	1 cut(s)	1207
NcoI	CCATGG	1 cut(s)	988
NdeI	CATATG	3 cut(s)	1197, 1662, 1779
NdeII	GATC	8 cut(s)	166, 230, 543, 559, 613, 766, 1076, 1084
NmuCI	GTSAC	1 cut(s)	1360
NsiI	ATGCAT	1 cut(s)	1258
NspI	RCATGY	7 cut(s)	192, 776, 796, 1379, 1565, 1648, 1675
PaeI	GCATGC	3 cut(s)	776, 796, 1675
PaqCI	CACCTGC	1 cut(s)	1436
PceI	AGGCCT	1 cut(s)	1600
PciI	ACATGT	1 cut(s)	188
PciSI	GCTCTTC	1 cut(s)	1018
PctI	GAATGC	1 cut(s)	268
PfeI	GAWTC	7 cut(s)	282, 347, 488, 905, 1043, 1235, 1528
PkrI	GCNGC	4 cut(s)	134, 778, 798, 1098
PleI	GAGTC	2 cut(s)	162, 1175
PpsI	GAGTC	2 cut(s)	162, 1175
Ppu21I	YACGTR	1 cut(s)	911
PpuMI	RGGWCCY	2 cut(s)	695, 1853
PscI	ACATGT	1 cut(s)	188
PshBI	ATTAAT	1 cut(s)	377
Psp5II	RGGWCCY	2 cut(s)	695, 1853
Psp6I	CCWGG	6 cut(s)	762, 937, 1411, 1666, 1830, 1855
PspGI	CCWGG	6 cut(s)	762, 937, 1411, 1666, 1830, 1855
PspPI	GGNCC	5 cut(s)	454, 695, 969, 1355, 1853
PspPPI	RGGWCCY	2 cut(s)	695, 1853
PstNI	CAGNNNCTG	1 cut(s)	769
PsuI	RGATCY	4 cut(s)	230, 543, 766, 1076
PvuII	CAGCTG	2 cut(s)	17, 1099
RsaI	GTAC	4 cut(s)	1135, 1656, 1696, 1753
RsaNI	GTAC	4 cut(s)	1134, 1655, 1695, 1752
SalI	GTCGAC	1 cut(s)	1519
SapI	GCTCTTC	1 cut(s)	1018
SaqAI	TTAA	6 cut(s)	182, 368, 377, 1892, 1899, 1905
SatI	GCNGC	4 cut(s)	133, 777, 797, 1097
Sau3AI	GATC	8 cut(s)	166, 230, 543, 559, 613, 766, 1076, 1084
Sau96I	GGNCC	5 cut(s)	454, 695, 969, 1355, 1853
ScaI	AGTACT	1 cut(s)	1696
SchI	GAGTC	2 cut(s)	163, 1175
ScrFI	CCNGG	7 cut(s)	764, 939, 1207, 1413, 1668, 1832, 1857
SexAI	ACCWGGT	1 cut(s)	1411
SfaNI	GCATC	4 cut(s)	1112, 1433, 1692, 1844
SfcI	CTRYAG	1 cut(s)	1185
SinI	GGWCC	5 cut(s)	454, 695, 969, 1355, 1853
SmlI	CTYRAG	1 cut(s)	686
SmoI	CTYRAG	1 cut(s)	686
SphI	GCATGC	3 cut(s)	776, 796, 1675
SseBI	AGGCCT	1 cut(s)	1600
SsiI	CCGC	1 cut(s)	508
SspI	AATATT	1 cut(s)	249
SspMI	CTAG	7 cut(s)	81, 485, 1092, 1341, 1797, 1869, 1912
StuI	AGGCCT	1 cut(s)	1600
StyD4I	CCNGG	7 cut(s)	762, 937, 1205, 1411, 1666, 1830, 1855
StyI	CCWWGG	1 cut(s)	988
TaaI	ACNGT	4 cut(s)	1172, 1214, 1393, 1882
TaiI	ACGT	3 cut(s)	568, 913, 1223
TaqI	TCGA	4 cut(s)	55, 87, 963, 1520
TatI	WGTACW	2 cut(s)	1133, 1694
TfiI	GAWTC	7 cut(s)	282, 347, 488, 905, 1043, 1235, 1528
Tru1I	TTAA	6 cut(s)	182, 368, 377, 1892, 1899, 1905
Tru9I	TTAA	6 cut(s)	182, 368, 377, 1892, 1899, 1905
TscAI	CASTG	5 cut(s)	979, 1156, 1177, 1365, 1617
TseFI	GTSAC	1 cut(s)	1360
TseI	GCWGC	4 cut(s)	132, 776, 796, 1096
Tsp45I	GTSAC	1 cut(s)	1360
TspGWI	ACGGA	1 cut(s)	1769
TspRI	CASTG	5 cut(s)	979, 1156, 1177, 1365, 1617
VpaK11BI	GGWCC	5 cut(s)	454, 695, 969, 1355, 1853
VspI	ATTAAT	1 cut(s)	377
XapI	RAATTY	5 cut(s)	808, 1544, 1550, 1873, 1894
XceI	RCATGY	7 cut(s)	192, 776, 796, 1379, 1565, 1648, 1675
XmiI	GTMKAC	1 cut(s)	1520
XspI	CTAG	7 cut(s)	81, 485, 1092, 1341, 1797, 1869, 1912
ZrmI	AGTACT	1 cut(s)	1696
Zsp2I	ATGCAT	1 cut(s)	1258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.