Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002232

Physical Location & Seq

Genomic Coordinates Forward (+)

55026665 .. 55028243

Gene Structure 1579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00205460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGCAAGCTCCTCGTGGGGCTTATGTCGGAGCATATGGCTACCAGCAGCCTCTTACGTACAATTATCCACAAGGGATGATGTTTCCTCCTTATGGGAACTGGGATCAATTTGAAACAAATGAAGCATTATTTGGGGTAAAAAGCACATTTGATGAGGAACTTTACACAACAAAGCTTGAGAAAGGTCCTAAAATGAGAGAGTTGGAAAGGGAAGCTTTACGAATAGCAAGAGAAATTGAGGGTGAGGATACCCGGGATCTGCATGCAGCAGAGGAGACCAGATACTCCTCTGTTTATCGGGGTGAGGTAGTTGATGATAGTGGATACGATGAAGATGAGGATATTTTATTGGATTCACGTAATACCGAGACCTTTGGAGGTTCTCCGGTTACGAGCAAAAGAGTTCAATCGATTGGACCGGTGGAAAAGGCAACCATGGAGTTCAGGTGCCTTCAAGCTCTTCATCTGTGGTACTTCCTCACTATTATCTCATTATTCGACCATAGTTGGCTGGGACTGGTGGGTTTAGTTTCTAAGTTGTATAGTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009987 GO:0010494 GO:0010603 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0032991 GO:0033043 GO:0034063 GO:0034622 GO:0035770 GO:0036464 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051128 GO:0065003 GO:0065007 GO:0070925 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1902115 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LsmAD PAM2 SM-ATX

Protein Analysis

183

Amino Acids

20.98

Weight (kDa)

4.68

Isoelectric Point (pI)

39.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LsmAD	PF06741	44 - 113	5.4e-18	LsmAD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54170 AT3G14010 AT3G14010 AT3G14010 AT3G14010 AT3G14010
fragaria_vesca	FvH4_6g34380 FvH4_6g34380 FvH4_6g34380 FvH4_6g34380 FvH4_6g34380 FvH4_6g34380 FvH4_6g34380
malus_domestica	MD09G1186100.v1.1 MD17G1171000.v1.1
prunus_persica	Prupe.7G067500_v2.0.a1 Prupe.7G067500_v2.0.a1 Prupe.7G067500_v2.0.a1
pyrus_communis	pycom09g10330 pycom12419g00200 pycom12419g00210
rosa_chinensis	RchiOBHm_Chr2g0110201 RchiOBHm_Chr2g0144721
rosa_laevigata	RLG00000020103
rosa_multiflora	Rmu_co8157946.1_g000001 Rmu_sc0013504.1_g000008 Rmu_sc0020351.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101040 Rroxscaffold_3G00222660 Rroxscaffold_7G00205460
rosa_rugosa	Rorug02G0389100 Rorug02G0389100 Rorug02G0389200 Rorug02G0389300
rosa_samantha	Rh2AG440900 Rh2BG451300 Rh2CG220200 Rh2CG428200 Rh2DG461300 Rh3DG266300
rosa_wichuraiana	Rw2G021150 Rw2G036070 Rw7G020140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	447
AclWI	GGATC	2 cut(s)	111, 264
AfaI	GTAC	2 cut(s)	59, 473
AfiI	CCNNNNNNNGG	1 cut(s)	92
AgeI	ACCGGT	1 cut(s)	418
AgsI	TTSAA	3 cut(s)	113, 407, 455
AjuI	GAANNNNNNNTTGG	2 cut(s)	114, 146
AluBI	AGCT	4 cut(s)	8, 175, 215, 458
AluI	AGCT	4 cut(s)	8, 175, 215, 458
Alw26I	GTCTC	2 cut(s)	269, 362
AlwI	GGATC	2 cut(s)	111, 264
Ama87I	CYCGRG	1 cut(s)	252
ApeKI	GCWGC	2 cut(s)	46, 266
AsiGI	ACCGGT	1 cut(s)	418
AspS9I	GGNCC	2 cut(s)	185, 416
AsuC2I	CCSGG	2 cut(s)	253, 254
AsuHPI	GGTGA	2 cut(s)	254, 314
AvaI	CYCGRG	1 cut(s)	252
AvaII	GGWCC	2 cut(s)	185, 416
BanI	GGYRCC	1 cut(s)	447
BauI	CACGAG	1 cut(s)	12
BbvI	GCAGC	2 cut(s)	58, 278
BcgI	CGANNNNNNTGC	1 cut(s)	27
BciVI	GTATCC	2 cut(s)	241, 317
BcnI	CCSGG	2 cut(s)	253, 254
BcoDI	GTCTC	2 cut(s)	269, 362
BfuI	GTATCC	2 cut(s)	241, 317
BisI	GCNGC	2 cut(s)	47, 267
BlsI	GCNGC	2 cut(s)	48, 268
Bme1390I	CCNGG	2 cut(s)	253, 254
Bme18I	GGWCC	2 cut(s)	185, 416
BmeT110I	CYCGRG	1 cut(s)	252
BmgT120I	GGNCC	2 cut(s)	185, 416
BmiI	GGNNCC	1 cut(s)	449
BmrFI	CCNGG	2 cut(s)	253, 254
BmrI	ACTGGG	1 cut(s)	109
BmuI	ACTGGG	1 cut(s)	109
BpuEI	CTTGAG	1 cut(s)	197
BpuMI	CCSGG	2 cut(s)	253, 254
Bsa29I	ATCGAT	1 cut(s)	410
BsaAI	YACGTR	2 cut(s)	57, 359
BsaI	GGTCTC	2 cut(s)	269, 362
BsaJI	CCNNGG	2 cut(s)	252, 435
BsaWI	WCCGGW	2 cut(s)	385, 418
BsaXI	ACNNNNNCTCC	2 cut(s)	431, 461
Bsc4I	CCNNNNNNNGG	1 cut(s)	92
Bse118I	RCCGGY	1 cut(s)	418
Bse1I	ACTGG	2 cut(s)	104, 522
BseCI	ATCGAT	1 cut(s)	410
BseDI	CCNNGG	2 cut(s)	252, 435
BseGI	GGATG	1 cut(s)	81
BseLI	CCNNNNNNNGG	1 cut(s)	92
BseNI	ACTGG	2 cut(s)	104, 522
BseRI	GAGGAG	2 cut(s)	277, 287
BseXI	GCAGC	2 cut(s)	58, 278
BseYI	CCCAGC	1 cut(s)	511
BshNI	GGYRCC	1 cut(s)	447
BshTI	ACCGGT	1 cut(s)	418
BshVI	ATCGAT	1 cut(s)	410
BsiHKCI	CYCGRG	1 cut(s)	252
BsiSI	CCGG	3 cut(s)	253, 386, 419
BslFI	GGGAC	1 cut(s)	528
BslI	CCNNNNNNNGG	1 cut(s)	92
BsmAI	GTCTC	2 cut(s)	269, 362
BsmFI	GGGAC	1 cut(s)	528
Bso31I	GGTCTC	2 cut(s)	269, 362
BsoBI	CYCGRG	1 cut(s)	252
Bsp143I	GATC	2 cut(s)	103, 256
Bsp19I	CCATGG	1 cut(s)	435
BspDI	ATCGAT	1 cut(s)	410
BspLI	GGNNCC	1 cut(s)	449
BspPI	GGATC	2 cut(s)	111, 264
BspQI	GCTCTTC	1 cut(s)	465
BspT107I	GGYRCC	1 cut(s)	447
BspTNI	GGTCTC	2 cut(s)	269, 362
BsrFI	RCCGGY	1 cut(s)	418
BsrI	ACTGG	2 cut(s)	104, 522
BssAI	RCCGGY	1 cut(s)	418
BssECI	CCNNGG	2 cut(s)	252, 435
BssMI	GATC	2 cut(s)	103, 256
BssSI	CACGAG	1 cut(s)	12
BssT1I	CCWWGG	1 cut(s)	435
Bst2BI	CACGAG	1 cut(s)	12
Bst6I	CTCTTC	1 cut(s)	465
BstBAI	YACGTR	2 cut(s)	57, 359
BstC8I	GCNNGC	2 cut(s)	6, 264
BstDEI	CTNAG	1 cut(s)	534
BstDSI	CCRYGG	1 cut(s)	435
BstF5I	GGATG	1 cut(s)	81
BstKTI	GATC	2 cut(s)	106, 259
BstMAI	GTCTC	2 cut(s)	269, 362
BstMBI	GATC	2 cut(s)	103, 256
BstNSI	RCATGY	1 cut(s)	266
BstSCI	CCNGG	2 cut(s)	251, 252
BstSNI	TACGTA	1 cut(s)	57
BstV1I	GCAGC	2 cut(s)	58, 278
BstX2I	RGATCY	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	256
Bsu15I	ATCGAT	1 cut(s)	410
BsuI	GTATCC	2 cut(s)	241, 317
BsuTUI	ATCGAT	1 cut(s)	410
BtgI	CCRYGG	1 cut(s)	435
BtsCI	GGATG	1 cut(s)	81
Cac8I	GCNNGC	2 cut(s)	6, 264
Cfr10I	RCCGGY	1 cut(s)	418
Cfr13I	GGNCC	2 cut(s)	185, 416
Cfr9I	CCCGGG	1 cut(s)	252
ClaI	ATCGAT	1 cut(s)	410
Csp6I	GTAC	2 cut(s)	58, 472
CspAI	ACCGGT	1 cut(s)	418
CviAII	CATG	2 cut(s)	263, 436
CviJI	RGCY	8 cut(s)	8, 20, 39, 49, 175, 215, 458, 511
CviKI_1	RGCY	8 cut(s)	8, 20, 39, 49, 175, 215, 458, 511
CviQI	GTAC	2 cut(s)	58, 472
DdeI	CTNAG	1 cut(s)	534
DpnI	GATC	2 cut(s)	105, 258
DpnII	GATC	2 cut(s)	103, 256
Eam1104I	CTCTTC	1 cut(s)	465
EarI	CTCTTC	1 cut(s)	465
Eco105I	TACGTA	1 cut(s)	57
Eco130I	CCWWGG	1 cut(s)	435
Eco31I	GGTCTC	2 cut(s)	269, 362
Eco47I	GGWCC	2 cut(s)	185, 416
Eco88I	CYCGRG	1 cut(s)	252
EcoO109I	RGGNCCY	1 cut(s)	185
EcoT14I	CCWWGG	1 cut(s)	435
ErhI	CCWWGG	1 cut(s)	435
FaeI	CATG	2 cut(s)	266, 439
FaiI	YATR	8 cut(s)	24, 34, 36, 93, 264, 437, 504, 543
FalI	AAGNNNNNCTT	2 cut(s)	199, 231
FaqI	GGGAC	1 cut(s)	528
FatI	CATG	2 cut(s)	262, 435
FauNDI	CATATG	1 cut(s)	34
Fnu4HI	GCNGC	2 cut(s)	47, 267
FokI	GGATG	1 cut(s)	88
Fsp4HI	GCNGC	2 cut(s)	47, 267
GluI	GCNGC	2 cut(s)	47, 267
GsaI	CCCAGC	1 cut(s)	515
HapII	CCGG	3 cut(s)	253, 386, 419
Hin1II	CATG	2 cut(s)	266, 439
HindIII	AAGCTT	2 cut(s)	173, 213
HinfI	GANTC	1 cut(s)	353
HpaII	CCGG	3 cut(s)	253, 386, 419
HphI	GGTGA	2 cut(s)	254, 314
Hpy188I	TCNGA	1 cut(s)	29
HpyAV	CCTTC	1 cut(s)	461
HpyCH4IV	ACGT	2 cut(s)	56, 358
HpyCH4V	TGCA	3 cut(s)	4, 262, 266
HpyF3I	CTNAG	1 cut(s)	534
HpySE526I	ACGT	2 cut(s)	56, 358
Hsp92II	CATG	2 cut(s)	266, 439
Kzo9I	GATC	2 cut(s)	103, 256
LguI	GCTCTTC	1 cut(s)	465
LmnI	GCTCC	2 cut(s)	13, 29
LpnPI	CCDG	9 cut(s)	56, 85, 266, 292, 399, 430, 432, 497, 503
Lsp1109I	GCAGC	2 cut(s)	58, 278
MaeII	ACGT	2 cut(s)	56, 358
MaeIII	GTNAC	1 cut(s)	388
MalI	GATC	2 cut(s)	105, 258
MboI	GATC	2 cut(s)	103, 256
MboII	GAAGA	2 cut(s)	344, 452
MflI	RGATCY	1 cut(s)	256
MluCI	AATT	3 cut(s)	61, 107, 234
MmeI	TCCRAC	2 cut(s)	7, 183
MspI	CCGG	3 cut(s)	253, 386, 419
MspR9I	CCNGG	2 cut(s)	253, 254
NciI	CCSGG	2 cut(s)	253, 254
NcoI	CCATGG	1 cut(s)	435
NdeI	CATATG	1 cut(s)	34
NdeII	GATC	2 cut(s)	103, 256
NlaIII	CATG	2 cut(s)	266, 439
NlaIV	GGNNCC	1 cut(s)	449
NspI	RCATGY	1 cut(s)	266
PaeI	GCATGC	1 cut(s)	266
PciSI	GCTCTTC	1 cut(s)	465
PfeI	GAWTC	1 cut(s)	353
PinAI	ACCGGT	1 cut(s)	418
PkrI	GCNGC	2 cut(s)	48, 268
Ppu21I	YACGTR	2 cut(s)	57, 359
PpuMI	RGGWCCY	1 cut(s)	185
Psp5II	RGGWCCY	1 cut(s)	185
PspFI	CCCAGC	1 cut(s)	511
PspN4I	GGNNCC	1 cut(s)	449
PspPI	GGNCC	2 cut(s)	185, 416
PspPPI	RGGWCCY	1 cut(s)	185
PsuI	RGATCY	1 cut(s)	256
RsaI	GTAC	2 cut(s)	59, 473
RsaNI	GTAC	2 cut(s)	58, 472
SapI	GCTCTTC	1 cut(s)	465
SatI	GCNGC	2 cut(s)	47, 267
Sau3AI	GATC	2 cut(s)	103, 256
Sau96I	GGNCC	2 cut(s)	185, 416
ScrFI	CCNGG	2 cut(s)	253, 254
SinI	GGWCC	2 cut(s)	185, 416
SmaI	CCCGGG	1 cut(s)	254
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
SnaBI	TACGTA	1 cut(s)	57
SphI	GCATGC	1 cut(s)	266
Sse9I	AATT	3 cut(s)	61, 107, 234
StyD4I	CCNGG	2 cut(s)	251, 252
StyI	CCWWGG	1 cut(s)	435
TaiI	ACGT	2 cut(s)	59, 361
TaqI	TCGA	2 cut(s)	410, 498
TasI	AATT	3 cut(s)	61, 107, 234
TfiI	GAWTC	1 cut(s)	353
TseI	GCWGC	2 cut(s)	46, 266
TspDTI	ATGAA	3 cut(s)	135, 345, 452
TspMI	CCCGGG	1 cut(s)	252
VpaK11BI	GGWCC	2 cut(s)	185, 416
XceI	RCATGY	1 cut(s)	266
XmaI	CCCGGG	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.