Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0005497

Physical Location & Seq

Genomic Coordinates Reverse (-)

4940890 .. 4944670

Gene Structure 3781 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g05070.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGGACAAATCCAATTCCTTCAAAGCCTCTCAGAATCCATGGAGCGCCGACTTCGGACTCGGCGCCACCGATCGAAGATTGGCATTTTCCCGCCAAGCCTCGTTCCAGCAGCACCGCGAACCTCCGCACACGCCGGTCTCCATCAATCTCAACGACTCCGAGGCGACGCCGTTTCTCTCCCGGAGCGTGTCCAGCATCGACGTTCCGCCGGGGGCGTATTTGACGGAGGAAAGCGACAAGATTTTCGGGGGCCGGAGCGTTTCTGCCGAGAAGTTGTCGGTTTTGGTGGTTTTTGAATCGGTGTTTCGGATATTGAGGTCGGGAAACCGGTATATGAAGAGGTTGTTCTTGTTGATTTCGCTTAATGTCGCGTATTCGACAGTGGAGTTATTTATTGGACTCTTCACTGGACGTATAGGTTTGGTGTCGGATTCTTTTCATTTAAGTTTTGGTTGTGGCTTATTAACGTTTTCTTTATTCGCTATGGCGGCATCTCGAAAGAAACCGGATGAAATTTACACTTATGGGTATAAAAGGCTACAAGTTCTGTCTGCTTTTACCAATGCTCTGTTTCTTTTGTTTATGTCATTCTCCTTGGCTGTCGAAGCACTTCATGCTTTCATACAGGATGAATCTGAACACAAGCATTACTTGATTGTTTCGGCTGTGACAAATCTACTGGTGAACCTTATTGGTGTTTGGTTCTTCAGAAATTATGCTCGTGTAAATCTTGTTTACAGAAATGCAGAAGATATGAACAATCACTCTGTTTGTCTGCATGTTCTTGCAGATTCAATTCGCAGTGCAGGGTTGATATTGGCATCCTGGTTTCTGTCAATTGGGGTTCAGAATGCAGAGGTTTTGTGTTTTGGATTAGTGTCAGTTGCAGTTTTTATGCTCGTAATGCCACTGTTTAGAGCGAGTGGTGGTATTCTACTCCAAATGGCACCACCGAATGTTCCACCTTCAGCATTGAGCAAATGCTGGCGACAGATTACTGCCTGTGAAGATGTTTCTGAAGTTTCACAAGCACGGTTTTGGGAACTGGTTCCTGGTCACGTTGTTGGGTCGCTCTCAGTACAGGTAAAGAAGGGGATAGATGATCGCCCCGTTCTTCGATATGTTCACGGTTTGTACCATGATTTGGGAATACAGGACTTGACAGTGCAAGCTGACAGTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009624 GO:0010035 GO:0010038 GO:0010043 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0032879 GO:0034220 GO:0042221 GO:0042592 GO:0043207 GO:0046873 GO:0046915 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0061088 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

395

Amino Acids

43.74

Weight (kDa)

7.72

Isoelectric Point (pI)

43.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12100 AT3G12100
fragaria_vesca	FvH4_6g22170
malus_domestica	MD12G1056600.v1.1 MD14G1055100.v1.1
prunus_persica	Prupe.7G077600_v2.0.a1 Prupe.7G077600_v2.0.a1
pyrus_communis	pycom12g05070 pycom14g04540
rosa_chinensis	RchiOBHm_Chr2g0145321 RchiOBHm_Chr3g0479521
rosa_laevigata	RLG00000023562
rosa_multiflora	Rmu_sc0001786.1_g000012 Rmu_sc0004732.1_g000002 Rmu_sc0016947.1_g000001
rosa_roxburghii	Rroxscaffold_6G00402170
rosa_rugosa	Rorug03G0176200
rosa_samantha	Rh3AG227000 Rh3CG257000 Rh3DG252600 Rh3DG352500 Rh4AG055300 Rh4BG053300 Rh5BG537800 Rh5CG561700 Rh7DG359200
rosa_wichuraiana	Rw3G020280 Rw4G012830 Rw6G021660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	62, 946
AccB7I	CCANNNNNTGG	1 cut(s)	1144
AccII	CGCG	2 cut(s)	117, 371
AciI	CCGC	5 cut(s)	91, 115, 125, 206, 488
AclI	AACGTT	1 cut(s)	467
AcsI	RAATTY	1 cut(s)	513
AcuI	CTGAAG	3 cut(s)	691, 951, 1038
AcyI	GRCGYC	2 cut(s)	63, 167
AfaI	GTAC	2 cut(s)	1080, 1136
AfiI	CCNNNNNNNGG	1 cut(s)	1144
AgeI	ACCGGT	1 cut(s)	327
AgsI	TTSAA	3 cut(s)	22, 296, 795
AjnI	CCWGG	2 cut(s)	824, 1051
AluBI	AGCT	1 cut(s)	1172
AluI	AGCT	1 cut(s)	1172
Alw26I	GTCTC	1 cut(s)	142
AlwNI	CAGNNNCTG	1 cut(s)	1182
AoxI	GGCC	1 cut(s)	250
ApeKI	GCWGC	1 cut(s)	109
ApoI	RAATTY	1 cut(s)	513
ArsI	GACNNNNNNTTYG	2 cut(s)	227, 259
AsiGI	ACCGGT	1 cut(s)	327
Asp700I	GAANNNNTTC	2 cut(s)	609, 1047
AspLEI	GCGC	2 cut(s)	47, 65
AspS9I	GGNCC	1 cut(s)	250
AsuC2I	CCSGG	2 cut(s)	181, 210
AsuHPI	GGTGA	1 cut(s)	694
BanI	GGYRCC	2 cut(s)	62, 946
BauI	CACGAG	1 cut(s)	720
BbvI	GCAGC	1 cut(s)	121
BccI	CCATC	1 cut(s)	149
BceAI	ACGGC	1 cut(s)	154
BciT130I	CCWGG	2 cut(s)	826, 1053
BcnI	CCSGG	2 cut(s)	181, 210
BcoDI	GTCTC	1 cut(s)	142
BfoI	RGCGCY	2 cut(s)	48, 66
BisI	GCNGC	2 cut(s)	110, 489
BlsI	GCNGC	2 cut(s)	111, 490
Bme1390I	CCNGG	4 cut(s)	181, 210, 826, 1053
BmgT120I	GGNCC	1 cut(s)	250
BmiI	GGNNCC	4 cut(s)	64, 251, 948, 1050
BmrFI	CCNGG	4 cut(s)	181, 210, 826, 1053
BmsI	GCATC	3 cut(s)	204, 500, 830
BpuMI	CCSGG	2 cut(s)	181, 210
BsaHI	GRCGYC	2 cut(s)	63, 167
BsaI	GGTCTC	1 cut(s)	142
BsaJI	CCNNGG	4 cut(s)	38, 159, 209, 594
BsaWI	WCCGGW	2 cut(s)	327, 505
Bsc4I	CCNNNNNNNGG	1 cut(s)	1144
Bse118I	RCCGGY	2 cut(s)	133, 327
Bse1I	ACTGG	3 cut(s)	412, 684, 1050
BseBI	CCWGG	2 cut(s)	826, 1053
BseDI	CCNNGG	4 cut(s)	38, 159, 209, 594
BseGI	GGATG	3 cut(s)	514, 634, 821
BseLI	CCNNNNNNNGG	1 cut(s)	1144
BseMII	CTCAG	2 cut(s)	44, 1089
BseNI	ACTGG	3 cut(s)	412, 684, 1050
BseXI	GCAGC	1 cut(s)	121
BsgI	GTGCAG	1 cut(s)	825
Bsh1236I	CGCG	2 cut(s)	117, 371
Bsh1285I	CGRYCG	1 cut(s)	73
BshFI	GGCC	1 cut(s)	252
BshNI	GGYRCC	2 cut(s)	62, 946
BshTI	ACCGGT	1 cut(s)	327
BsiEI	CGRYCG	1 cut(s)	73
BsiSI	CCGG	6 cut(s)	134, 181, 209, 253, 328, 506
BslI	CCNNNNNNNGG	1 cut(s)	1144
BsmAI	GTCTC	1 cut(s)	142
BsmI	GAATGC	1 cut(s)	856
BsnI	GGCC	1 cut(s)	252
Bso31I	GGTCTC	1 cut(s)	142
Bsp143I	GATC	2 cut(s)	70, 1102
Bsp19I	CCATGG	1 cut(s)	38
BspACI	CCGC	5 cut(s)	91, 115, 125, 206, 488
BspANI	GGCC	1 cut(s)	252
BspCNI	CTCAG	2 cut(s)	43, 1088
BspFNI	CGCG	2 cut(s)	117, 371
BspLI	GGNNCC	4 cut(s)	64, 251, 948, 1050
BspT107I	GGYRCC	2 cut(s)	62, 946
BspTNI	GGTCTC	1 cut(s)	142
BsrFI	RCCGGY	2 cut(s)	133, 327
BsrI	ACTGG	3 cut(s)	412, 684, 1050
BssAI	RCCGGY	2 cut(s)	133, 327
BssECI	CCNNGG	4 cut(s)	38, 159, 209, 594
BssMI	GATC	2 cut(s)	70, 1102
BssNI	GRCGYC	2 cut(s)	63, 167
BssSI	CACGAG	1 cut(s)	720
BssT1I	CCWWGG	2 cut(s)	38, 594
Bst2BI	CACGAG	1 cut(s)	720
Bst2UI	CCWGG	2 cut(s)	826, 1053
Bst4CI	ACNGT	6 cut(s)	382, 912, 1035, 1130, 1165, 1178
Bst6I	CTCTTC	2 cut(s)	332, 407
BstACI	GRCGYC	2 cut(s)	63, 167
BstAPI	GCANNNNNTGC	1 cut(s)	614
BstC8I	GCNNGC	2 cut(s)	986, 1170
BstDEI	CTNAG	2 cut(s)	30, 1075
BstDSI	CCRYGG	1 cut(s)	38
BstF5I	GGATG	3 cut(s)	514, 634, 821
BstFNI	CGCG	2 cut(s)	117, 371
BstH2I	RGCGCY	2 cut(s)	48, 66
BstHHI	GCGC	2 cut(s)	47, 65
BstKTI	GATC	2 cut(s)	73, 1105
BstMAI	GTCTC	1 cut(s)	142
BstMBI	GATC	2 cut(s)	70, 1102
BstMCI	CGRYCG	1 cut(s)	73
BstMWI	GCNNNNNNNGC	5 cut(s)	192, 488, 605, 614, 904
BstNI	CCWGG	2 cut(s)	826, 1053
BstNSI	RCATGY	1 cut(s)	782
BstSCI	CCNGG	4 cut(s)	179, 208, 824, 1051
BstUI	CGCG	2 cut(s)	117, 371
BstV1I	GCAGC	1 cut(s)	121
BsuRI	GGCC	1 cut(s)	252
BtgI	CCRYGG	1 cut(s)	38
BtsCI	GGATG	3 cut(s)	514, 634, 821
BtsI	GCAGTG	1 cut(s)	808
BtsIMutI	CAGTG	6 cut(s)	387, 405, 808, 908, 1170, 1183
Cac8I	GCNNGC	2 cut(s)	986, 1170
CaiI	CAGNNNCTG	1 cut(s)	1182
CfoI	GCGC	2 cut(s)	47, 65
Cfr10I	RCCGGY	2 cut(s)	133, 327
Cfr13I	GGNCC	1 cut(s)	250
CseI	GACGC	1 cut(s)	175
Csp6I	GTAC	2 cut(s)	1079, 1135
CspAI	ACCGGT	1 cut(s)	327
CviAII	CATG	4 cut(s)	39, 614, 779, 1139
CviJI	RGCY	8 cut(s)	26, 98, 252, 459, 538, 599, 665, 1172
CviKI_1	RGCY	8 cut(s)	26, 98, 252, 459, 538, 599, 665, 1172
CviQI	GTAC	2 cut(s)	1079, 1135
DdeI	CTNAG	2 cut(s)	30, 1075
DinI	GGCGCC	1 cut(s)	64
DpnI	GATC	2 cut(s)	72, 1104
DpnII	GATC	2 cut(s)	70, 1102
Eam1104I	CTCTTC	2 cut(s)	332, 407
EarI	CTCTTC	2 cut(s)	332, 407
EciI	GGCGGA	1 cut(s)	195
Eco130I	CCWWGG	2 cut(s)	38, 594
Eco31I	GGTCTC	1 cut(s)	142
Eco57I	CTGAAG	3 cut(s)	691, 951, 1038
EcoRII	CCWGG	2 cut(s)	824, 1051
EcoT14I	CCWWGG	2 cut(s)	38, 594
EgeI	GGCGCC	1 cut(s)	64
EheI	GGCGCC	1 cut(s)	64
ErhI	CCWWGG	2 cut(s)	38, 594
FaeI	CATG	4 cut(s)	42, 617, 782, 1142
FalI	AAGNNNNNCTT	2 cut(s)	635, 667
FatI	CATG	4 cut(s)	38, 613, 778, 1138
FauI	CCCGC	1 cut(s)	98
Fnu4HI	GCNGC	2 cut(s)	110, 489
FokI	GGATG	3 cut(s)	521, 641, 808
Fsp4HI	GCNGC	2 cut(s)	110, 489
GlaI	GCGC	2 cut(s)	46, 64
GluI	GCNGC	2 cut(s)	110, 489
HaeII	RGCGCY	2 cut(s)	48, 66
HaeIII	GGCC	1 cut(s)	252
HapII	CCGG	6 cut(s)	134, 181, 209, 253, 328, 506
HgaI	GACGC	1 cut(s)	175
HhaI	GCGC	2 cut(s)	47, 65
Hin1I	GRCGYC	2 cut(s)	63, 167
Hin1II	CATG	4 cut(s)	42, 617, 782, 1142
Hin6I	GCGC	2 cut(s)	45, 63
HinP1I	GCGC	2 cut(s)	45, 63
HinfI	GANTC	8 cut(s)	34, 57, 155, 296, 399, 431, 632, 791
HpaII	CCGG	6 cut(s)	134, 181, 209, 253, 328, 506
HphI	GGTGA	1 cut(s)	694
Hpy166II	GTNNAC	3 cut(s)	685, 736, 1126
Hpy188III	TCNNGA	2 cut(s)	321, 495
Hpy8I	GTNNAC	3 cut(s)	685, 736, 1126
Hpy99I	CGWCG	2 cut(s)	169, 203
HpyAV	CCTTC	3 cut(s)	28, 975, 1084
HpyCH4III	ACNGT	6 cut(s)	382, 912, 1035, 1130, 1165, 1178
HpyCH4IV	ACGT	4 cut(s)	201, 412, 467, 1059
HpyCH4V	TGCA	7 cut(s)	746, 778, 788, 806, 854, 887, 1168
HpyF10VI	GCNNNNNNNGC	5 cut(s)	192, 488, 605, 614, 904
HpyF3I	CTNAG	2 cut(s)	30, 1075
HpySE526I	ACGT	4 cut(s)	201, 412, 467, 1059
Hsp92I	GRCGYC	2 cut(s)	63, 167
Hsp92II	CATG	4 cut(s)	42, 617, 782, 1142
HspAI	GCGC	2 cut(s)	45, 63
KasI	GGCGCC	1 cut(s)	62
Kzo9I	GATC	2 cut(s)	70, 1102
LmnI	GCTCC	3 cut(s)	42, 183, 255
Lsp1109I	GCAGC	1 cut(s)	121
LweI	GCATC	3 cut(s)	204, 500, 830
MaeII	ACGT	4 cut(s)	201, 412, 467, 1059
MaeIII	GTNAC	2 cut(s)	667, 1055
MalI	GATC	2 cut(s)	72, 1104
MboI	GATC	2 cut(s)	70, 1102
MboII	GAAGA	7 cut(s)	87, 349, 394, 697, 761, 1019, 1106
MfeI	CAATTG	1 cut(s)	837
MluCI	AATT	5 cut(s)	13, 513, 712, 795, 837
Mly113I	GGCGCC	1 cut(s)	63
MlyI	GAGTC	3 cut(s)	51, 149, 393
MmeI	TCCRAC	1 cut(s)	408
MnlI	CCTC	8 cut(s)	37, 109, 132, 154, 220, 309, 333, 850
MroXI	GAANNNNTTC	2 cut(s)	609, 1047
MseI	TTAA	3 cut(s)	363, 443, 464
MspI	CCGG	6 cut(s)	134, 181, 209, 253, 328, 506
MspR9I	CCNGG	4 cut(s)	181, 210, 826, 1053
MunI	CAATTG	1 cut(s)	837
Mva1269I	GAATGC	1 cut(s)	856
MvaI	CCWGG	2 cut(s)	826, 1053
MvnI	CGCG	2 cut(s)	117, 371
MwoI	GCNNNNNNNGC	5 cut(s)	192, 488, 605, 614, 904
NarI	GGCGCC	1 cut(s)	63
NciI	CCSGG	2 cut(s)	181, 210
NcoI	CCATGG	1 cut(s)	38
NdeII	GATC	2 cut(s)	70, 1102
NlaIII	CATG	4 cut(s)	42, 617, 782, 1142
NlaIV	GGNNCC	4 cut(s)	64, 251, 948, 1050
NmeAIII	GCCGAG	2 cut(s)	39, 292
NmuCI	GTSAC	2 cut(s)	667, 1055
NspI	RCATGY	1 cut(s)	782
PcsI	WCGNNNNNNNCGW	1 cut(s)	66
PctI	GAATGC	1 cut(s)	856
PdmI	GAANNNNTTC	2 cut(s)	609, 1047
PfeI	GAWTC	5 cut(s)	34, 296, 431, 632, 791
PflFI	GACNNNGTC	1 cut(s)	1178
PflMI	CCANNNNNTGG	1 cut(s)	1144
PfoI	TCCNGGA	1 cut(s)	179
PinAI	ACCGGT	1 cut(s)	327
PkrI	GCNGC	2 cut(s)	111, 490
Ple19I	CGATCG	1 cut(s)	73
PleI	GAGTC	3 cut(s)	51, 149, 393
PluTI	GGCGCC	1 cut(s)	66
PpsI	GAGTC	3 cut(s)	51, 149, 393
Psp1406I	AACGTT	1 cut(s)	467
Psp6I	CCWGG	2 cut(s)	824, 1051
PspGI	CCWGG	2 cut(s)	824, 1051
PspN4I	GGNNCC	4 cut(s)	64, 251, 948, 1050
PspPI	GGNCC	1 cut(s)	250
PstNI	CAGNNNCTG	1 cut(s)	1182
PsyI	GACNNNGTC	1 cut(s)	1178
PvuI	CGATCG	1 cut(s)	73
RsaI	GTAC	2 cut(s)	1080, 1136
RsaNI	GTAC	2 cut(s)	1079, 1135
SaqAI	TTAA	3 cut(s)	363, 443, 464
SatI	GCNGC	2 cut(s)	110, 489
Sau3AI	GATC	2 cut(s)	70, 1102
Sau96I	GGNCC	1 cut(s)	250
SchI	GAGTC	3 cut(s)	51, 149, 393
ScrFI	CCNGG	4 cut(s)	181, 210, 826, 1053
SfaNI	GCATC	3 cut(s)	204, 500, 830
SfoI	GGCGCC	1 cut(s)	64
Sse9I	AATT	5 cut(s)	13, 513, 712, 795, 837
SsiI	CCGC	5 cut(s)	91, 115, 125, 206, 488
SspDI	GGCGCC	1 cut(s)	62
StyD4I	CCNGG	4 cut(s)	179, 208, 824, 1051
StyI	CCWWGG	2 cut(s)	38, 594
TaaI	ACNGT	6 cut(s)	382, 912, 1035, 1130, 1165, 1178
TaiI	ACGT	4 cut(s)	204, 415, 470, 1062
TaqI	TCGA	6 cut(s)	73, 198, 377, 496, 603, 1117
TasI	AATT	5 cut(s)	13, 513, 712, 795, 837
TatI	WGTACW	1 cut(s)	1078
TauI	GCSGC	1 cut(s)	491
TfiI	GAWTC	5 cut(s)	34, 296, 431, 632, 791
Tru1I	TTAA	3 cut(s)	363, 443, 464
Tru9I	TTAA	3 cut(s)	363, 443, 464
TscAI	CASTG	6 cut(s)	387, 412, 808, 915, 1170, 1183
TseFI	GTSAC	2 cut(s)	667, 1055
TseI	GCWGC	1 cut(s)	109
Tsp45I	GTSAC	2 cut(s)	667, 1055
TspDTI	ATGAA	7 cut(s)	350, 428, 525, 602, 610, 645, 770
TspGWI	ACGGA	1 cut(s)	239
TspRI	CASTG	6 cut(s)	387, 412, 808, 915, 1170, 1183
Tth111I	GACNNNGTC	1 cut(s)	1178
Van91I	CCANNNNNTGG	1 cut(s)	1144
XapI	RAATTY	1 cut(s)	513
XceI	RCATGY	1 cut(s)	782
XmnI	GAANNNNTTC	2 cut(s)	609, 1047

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.