Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016947.1

Orthogroup ID

OG0005497

Physical Location & Seq

Genomic Coordinates Forward (+)

206 .. 1278

Gene Structure 1073 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016947.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

atgaatcacattgaaatctcaaaccacccaaacctccaaaacgctttcttaaaaccttcgctgcttcttcctcctcccctacactctctcgacatatcgactctctcgttccaccaataccacgaccccccgcacacgccgagctccatcaatctcaacgactcgtcgacgccgtttctgtcccggagcgtctccagtatcgatgtcccgccggcggccgaagaaaacgacaagcttcttttcggcgaaggaagagtttcggccgagaaattaacctttttggcgatattcgaatcggtctttcggacgctgaggtccggaaatcggcatatgaagagactgttcctcttgatttcgctcaacgtttttagtgcaaaaatcaagaaccaagctggttatggacctccagcggatatttggagccttggttgcactgtgttggagatattaacaaggcaggttccctaccctggtttggaaccggtccgtgccattttcattaagagctcaagatacaccaggttttccttcgcatccggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009624 GO:0010035 GO:0010038 GO:0010043 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0032879 GO:0034220 GO:0042221 GO:0042592 GO:0043207 GO:0046873 GO:0046915 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0061088 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

180

Amino Acids

20.07

Weight (kDa)

9.16

Isoelectric Point (pI)

51.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12100 AT3G12100
fragaria_vesca	FvH4_6g22170
malus_domestica	MD12G1056600.v1.1 MD14G1055100.v1.1
prunus_persica	Prupe.7G077600_v2.0.a1 Prupe.7G077600_v2.0.a1
pyrus_communis	pycom12g05070 pycom14g04540
rosa_chinensis	RchiOBHm_Chr2g0145321 RchiOBHm_Chr3g0479521
rosa_laevigata	RLG00000023562
rosa_multiflora	Rmu_sc0001786.1_g000012 Rmu_sc0004732.1_g000002 Rmu_sc0016947.1_g000001
rosa_roxburghii	Rroxscaffold_6G00402170
rosa_rugosa	Rorug03G0176200
rosa_samantha	Rh3AG227000 Rh3CG257000 Rh3DG252600 Rh3DG352500 Rh4AG055300 Rh4BG053300 Rh5BG537800 Rh5CG561700 Rh7DG359200
rosa_wichuraiana	Rw3G020280 Rw4G012830 Rw6G021660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	313
Acc36I	ACCTGC	1 cut(s)	448
AccI	GTMKAC	1 cut(s)	167
AccIII	TCCGGA	1 cut(s)	317
AciI	CCGC	4 cut(s)	131, 209, 215, 410
AclI	AACGTT	1 cut(s)	363
AcoI	YGGCCR	2 cut(s)	216, 261
AcyI	GRCGYC	1 cut(s)	170
AfiI	CCNNNNNNNGG	4 cut(s)	214, 324, 470, 475
AgeI	ACCGGT	1 cut(s)	481
AgsI	TTSAA	1 cut(s)	14
AjnI	CCWGG	2 cut(s)	469, 518
AluBI	AGCT	4 cut(s)	144, 235, 392, 507
AluI	AGCT	4 cut(s)	144, 235, 392, 507
Alw21I	GWGCWC	2 cut(s)	146, 509
Alw26I	GTCTC	2 cut(s)	196, 331
Aor13HI	TCCGGA	1 cut(s)	317
AoxI	GGCC	2 cut(s)	216, 261
ApeKI	GCWGC	1 cut(s)	61
AsiGI	ACCGGT	1 cut(s)	481
Asp700I	GAANNNNTTC	1 cut(s)	256
AspS9I	GGNCC	3 cut(s)	315, 401, 484
AsuC2I	CCSGG	1 cut(s)	184
AsuII	TTCGAA	1 cut(s)	291
AvaII	GGWCC	3 cut(s)	315, 401, 484
BanII	GRGCYC	2 cut(s)	146, 509
Bbv12I	GWGCWC	2 cut(s)	146, 509
BbvCI	CCTCAGC	1 cut(s)	311
BbvI	GCAGC	1 cut(s)	48
BccI	CCATC	1 cut(s)	155
BceAI	ACGGC	1 cut(s)	157
BciT130I	CCWGG	2 cut(s)	471, 520
BcnI	CCSGG	1 cut(s)	184
BcoDI	GTCTC	2 cut(s)	196, 331
BfuAI	ACCTGC	1 cut(s)	448
BisI	GCNGC	2 cut(s)	62, 216
BlsI	GCNGC	2 cut(s)	63, 217
Bme1390I	CCNGG	3 cut(s)	184, 471, 520
Bme18I	GGWCC	3 cut(s)	315, 401, 484
BmgT120I	GGNCC	3 cut(s)	315, 401, 484
BmiI	GGNNCC	3 cut(s)	422, 462, 480
BmrFI	CCNGG	3 cut(s)	184, 471, 520
BpmI	CTGGAG	2 cut(s)	178, 390
Bpu10I	CCTNAGC	1 cut(s)	311
Bpu14I	TTCGAA	1 cut(s)	291
BpuEI	CTTGAG	1 cut(s)	493
BpuMI	CCSGG	1 cut(s)	184
Bsa29I	ATCGAT	1 cut(s)	201
BsaHI	GRCGYC	1 cut(s)	170
BsaJI	CCNNGG	2 cut(s)	424, 469
BsaWI	WCCGGW	2 cut(s)	317, 481
BsaXI	ACNNNNNCTCC	2 cut(s)	412, 442
Bsc4I	CCNNNNNNNGG	4 cut(s)	214, 324, 470, 475
Bse118I	RCCGGY	2 cut(s)	211, 481
Bse1I	ACTGG	1 cut(s)	195
BseAI	TCCGGA	1 cut(s)	317
BseBI	CCWGG	2 cut(s)	471, 520
BseCI	ATCGAT	1 cut(s)	201
BseDI	CCNNGG	2 cut(s)	424, 469
BseGI	GGATG	1 cut(s)	533
BseLI	CCNNNNNNNGG	4 cut(s)	214, 324, 470, 475
BseMII	CTCAG	1 cut(s)	302
BseNI	ACTGG	1 cut(s)	195
BseRI	GAGGAG	1 cut(s)	63
BseX3I	CGGCCG	2 cut(s)	216, 261
BseXI	GCAGC	1 cut(s)	48
Bsh1285I	CGRYCG	2 cut(s)	219, 264
BshFI	GGCC	2 cut(s)	218, 263
BshTI	ACCGGT	1 cut(s)	481
BshVI	ATCGAT	1 cut(s)	201
BsiEI	CGRYCG	2 cut(s)	219, 264
BsiHKAI	GWGCWC	2 cut(s)	146, 509
BsiSI	CCGG	5 cut(s)	184, 212, 318, 482, 537
BslFI	GGGAC	2 cut(s)	166, 191
BslI	CCNNNNNNNGG	4 cut(s)	214, 324, 470, 475
BsmAI	GTCTC	2 cut(s)	196, 331
BsmBI	CGTCTC	1 cut(s)	196
BsmFI	GGGAC	2 cut(s)	166, 191
BsnI	GGCC	2 cut(s)	218, 263
Bsp119I	TTCGAA	1 cut(s)	291
Bsp1286I	GDGCHC	2 cut(s)	146, 509
Bsp13I	TCCGGA	1 cut(s)	317
BspACI	CCGC	4 cut(s)	131, 209, 215, 410
BspANI	GGCC	2 cut(s)	218, 263
BspCNI	CTCAG	1 cut(s)	303
BspDI	ATCGAT	1 cut(s)	201
BspEI	TCCGGA	1 cut(s)	317
BspLI	GGNNCC	3 cut(s)	422, 462, 480
BspMI	ACCTGC	1 cut(s)	448
BspT104I	TTCGAA	1 cut(s)	291
BsrFI	RCCGGY	2 cut(s)	211, 481
BsrI	ACTGG	1 cut(s)	195
BssAI	RCCGGY	2 cut(s)	211, 481
BssECI	CCNNGG	2 cut(s)	424, 469
BssNI	GRCGYC	1 cut(s)	170
BssT1I	CCWWGG	1 cut(s)	424
Bst2UI	CCWGG	2 cut(s)	471, 520
Bst4CI	ACNGT	2 cut(s)	342, 436
Bst6I	CTCTTC	2 cut(s)	247, 329
BstACI	GRCGYC	1 cut(s)	170
BstBI	TTCGAA	1 cut(s)	291
BstC8I	GCNNGC	1 cut(s)	213
BstDEI	CTNAG	1 cut(s)	311
BstF5I	GGATG	1 cut(s)	533
BstMAI	GTCTC	2 cut(s)	196, 331
BstMCI	CGRYCG	2 cut(s)	219, 264
BstMWI	GCNNNNNNNGC	1 cut(s)	429
BstNI	CCWGG	2 cut(s)	471, 520
BstSCI	CCNGG	3 cut(s)	182, 469, 518
BstV1I	GCAGC	1 cut(s)	48
BstZI	CGGCCG	2 cut(s)	216, 261
Bsu15I	ATCGAT	1 cut(s)	201
BsuRI	GGCC	2 cut(s)	218, 263
BsuTUI	ATCGAT	1 cut(s)	201
BtsCI	GGATG	1 cut(s)	533
BtsIMutI	CAGTG	1 cut(s)	432
BveI	ACCTGC	1 cut(s)	448
Cac8I	GCNNGC	1 cut(s)	213
Cfr10I	RCCGGY	2 cut(s)	211, 481
Cfr13I	GGNCC	3 cut(s)	315, 401, 484
ClaI	ATCGAT	1 cut(s)	201
CpoI	CGGWCCG	1 cut(s)	484
CseI	GACGC	3 cut(s)	178, 178, 316
CsiI	ACCWGGT	1 cut(s)	518
CspAI	ACCGGT	1 cut(s)	481
CspI	CGGWCCG	1 cut(s)	484
CviJI	RGCY	8 cut(s)	144, 218, 235, 263, 392, 423, 507, 540
CviKI_1	RGCY	8 cut(s)	144, 218, 235, 263, 392, 423, 507, 540
DdeI	CTNAG	1 cut(s)	311
DrdI	GACNNNNNNGTC	1 cut(s)	313
DseDI	GACNNNNNNGTC	1 cut(s)	313
EaeI	YGGCCR	2 cut(s)	216, 261
EagI	CGGCCG	2 cut(s)	216, 261
Eam1104I	CTCTTC	2 cut(s)	247, 329
EarI	CTCTTC	2 cut(s)	247, 329
Ecl136II	GAGCTC	2 cut(s)	144, 507
EclXI	CGGCCG	2 cut(s)	216, 261
Eco130I	CCWWGG	1 cut(s)	424
Eco24I	GRGCYC	2 cut(s)	146, 509
Eco47I	GGWCC	3 cut(s)	315, 401, 484
Eco52I	CGGCCG	2 cut(s)	216, 261
Eco53kI	GAGCTC	2 cut(s)	144, 507
EcoICRI	GAGCTC	2 cut(s)	144, 507
EcoRII	CCWGG	2 cut(s)	469, 518
EcoT14I	CCWWGG	1 cut(s)	424
EcoT38I	GRGCYC	2 cut(s)	146, 509
ErhI	CCWWGG	1 cut(s)	424
Esp3I	CGTCTC	1 cut(s)	196
FaiI	YATR	4 cut(s)	95, 330, 332, 399
FaqI	GGGAC	2 cut(s)	166, 191
FauI	CCCGC	2 cut(s)	138, 216
FauNDI	CATATG	1 cut(s)	330
FblI	GTMKAC	1 cut(s)	167
Fnu4HI	GCNGC	2 cut(s)	62, 216
FokI	GGATG	1 cut(s)	520
FriOI	GRGCYC	2 cut(s)	146, 509
Fsp4HI	GCNGC	2 cut(s)	62, 216
GluI	GCNGC	2 cut(s)	62, 216
GsuI	CTGGAG	2 cut(s)	178, 390
HaeIII	GGCC	2 cut(s)	218, 263
HapII	CCGG	5 cut(s)	184, 212, 318, 482, 537
HgaI	GACGC	3 cut(s)	178, 178, 316
Hin1I	GRCGYC	1 cut(s)	170
HincII	GTYRAC	1 cut(s)	168
HindII	GTYRAC	1 cut(s)	168
HindIII	AAGCTT	1 cut(s)	233
HinfI	GANTC	4 cut(s)	4, 100, 161, 293
HpaII	CCGG	5 cut(s)	184, 212, 318, 482, 537
Hpy166II	GTNNAC	1 cut(s)	168
Hpy188I	TCNGA	1 cut(s)	306
Hpy188III	TCNNGA	5 cut(s)	89, 318, 349, 382, 510
Hpy8I	GTNNAC	1 cut(s)	168
Hpy99I	CGWCG	2 cut(s)	169, 172
HpyAV	CCTTC	3 cut(s)	66, 242, 538
HpyCH4III	ACNGT	2 cut(s)	342, 436
HpyCH4IV	ACGT	1 cut(s)	363
HpyCH4V	TGCA	2 cut(s)	374, 432
HpyF10VI	GCNNNNNNNGC	1 cut(s)	429
HpyF3I	CTNAG	1 cut(s)	311
HpySE526I	ACGT	1 cut(s)	363
Hsp92I	GRCGYC	1 cut(s)	170
Kpn2I	TCCGGA	1 cut(s)	317
KroI	GCCGGC	1 cut(s)	211
KroNI	GCCGGC	1 cut(s)	213
LmnI	GCTCC	3 cut(s)	149, 186, 420
Lsp1109I	GCAGC	1 cut(s)	48
MabI	ACCWGGT	1 cut(s)	518
MaeII	ACGT	1 cut(s)	363
MboII	GAAGA	4 cut(s)	59, 233, 264, 346
MhlI	GDGCHC	2 cut(s)	146, 509
MluCI	AATT	1 cut(s)	269
MlyI	GAGTC	2 cut(s)	94, 155
MmeI	TCCRAC	1 cut(s)	420
MnlI	CCTC	6 cut(s)	44, 81, 84, 306, 356, 414
MreI	CGCCGGCG	1 cut(s)	211
MroI	TCCGGA	1 cut(s)	317
MroNI	GCCGGC	1 cut(s)	211
MroXI	GAANNNNTTC	1 cut(s)	256
MseI	TTAA	4 cut(s)	50, 272, 449, 501
MspA1I	CMGCKG	1 cut(s)	410
MspI	CCGG	5 cut(s)	184, 212, 318, 482, 537
MspR9I	CCNGG	3 cut(s)	184, 471, 520
MvaI	CCWGG	2 cut(s)	471, 520
MwoI	GCNNNNNNNGC	1 cut(s)	429
NaeI	GCCGGC	1 cut(s)	213
NciI	CCSGG	1 cut(s)	184
NdeI	CATATG	1 cut(s)	330
NgoMIV	GCCGGC	1 cut(s)	211
NlaIV	GGNNCC	3 cut(s)	422, 462, 480
NmeAIII	GCCGAG	2 cut(s)	165, 289
NspV	TTCGAA	1 cut(s)	291
PcsI	WCGNNNNNNNCGW	2 cut(s)	104, 170
PdiI	GCCGGC	1 cut(s)	213
PdmI	GAANNNNTTC	1 cut(s)	256
PfeI	GAWTC	2 cut(s)	4, 293
PfoI	TCCNGGA	1 cut(s)	182
PinAI	ACCGGT	1 cut(s)	481
PkrI	GCNGC	2 cut(s)	63, 217
PleI	GAGTC	2 cut(s)	94, 155
PpsI	GAGTC	2 cut(s)	94, 155
Psp124BI	GAGCTC	2 cut(s)	146, 509
Psp1406I	AACGTT	1 cut(s)	363
Psp6I	CCWGG	2 cut(s)	469, 518
PspGI	CCWGG	2 cut(s)	469, 518
PspN4I	GGNNCC	3 cut(s)	422, 462, 480
PspPI	GGNCC	3 cut(s)	315, 401, 484
Rsr2I	CGGWCCG	1 cut(s)	484
RsrII	CGGWCCG	1 cut(s)	484
SacI	GAGCTC	2 cut(s)	146, 509
SalI	GTCGAC	1 cut(s)	166
SaqAI	TTAA	4 cut(s)	50, 272, 449, 501
SatI	GCNGC	2 cut(s)	62, 216
Sau96I	GGNCC	3 cut(s)	315, 401, 484
SchI	GAGTC	2 cut(s)	94, 155
ScrFI	CCNGG	3 cut(s)	184, 471, 520
SduI	GDGCHC	2 cut(s)	146, 509
SexAI	ACCWGGT	1 cut(s)	518
SfuI	TTCGAA	1 cut(s)	291
SgrAI	CRCCGGYG	1 cut(s)	211
SgrDI	CGTCGACG	1 cut(s)	166
SinI	GGWCC	3 cut(s)	315, 401, 484
SmlI	CTYRAG	1 cut(s)	508
SmoI	CTYRAG	1 cut(s)	508
Sse9I	AATT	1 cut(s)	269
SsiI	CCGC	4 cut(s)	131, 209, 215, 410
SstI	GAGCTC	2 cut(s)	146, 509
StyD4I	CCNGG	3 cut(s)	182, 469, 518
StyI	CCWWGG	1 cut(s)	424
TaaI	ACNGT	2 cut(s)	342, 436
TaiI	ACGT	1 cut(s)	366
TaqI	TCGA	5 cut(s)	90, 98, 167, 201, 291
TaqII	GACCGA	1 cut(s)	286
TasI	AATT	1 cut(s)	269
TauI	GCSGC	1 cut(s)	218
TfiI	GAWTC	2 cut(s)	4, 293
Tru1I	TTAA	4 cut(s)	50, 272, 449, 501
Tru9I	TTAA	4 cut(s)	50, 272, 449, 501
TscAI	CASTG	1 cut(s)	439
TseI	GCWGC	1 cut(s)	61
TspDTI	ATGAA	3 cut(s)	17, 347, 487
TspGWI	ACGGA	1 cut(s)	476
TspRI	CASTG	1 cut(s)	439
VpaK11BI	GGWCC	3 cut(s)	315, 401, 484
XcmI	CCANNNNNNNNNTGG	2 cut(s)	395, 414
XmiI	GTMKAC	1 cut(s)	167
XmnI	GAANNNNTTC	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.