Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0005497

Physical Location & Seq

Genomic Coordinates Forward (+)

85118402 .. 85118824

Gene Structure 423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG537800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGAATCACATTGAAATCTCAAACCACCCAAACCTCCAAAACGCTTTCTTAAAACCTTCGCTGCTTCTTCCTCCTCCTCTACACTCTCTCGACATATCGACTCTCTCGTTCCACCAATACCACGACCCCCCGCACACGCCGCGCTCCATCAATCTCAACGACTCGTCGACGCCGTTTCTGTCCCAGAGCGTCTCCAGTATCGACGTCCCGCCGGCGGCCGAAGAAAACGACAAGCTTCTTTTCGGCGAAGGAAGAGTTTCGGCCGAGAAATTAACCTTTTTGGCGATATTCGAATCGGTCTTTCGGACGCTGAGGTCCGGAAATCGGCATATGAAGAGACTGTTCCTCTTGATTTCGCTCAACGTGGCTTATTCTACTGCCGAGTTGTGTATTGGACTCTTCACCGGACGTGTAGGTCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009624 GO:0010035 GO:0010038 GO:0010043 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0032879 GO:0034220 GO:0042221 GO:0042592 GO:0043207 GO:0046873 GO:0046915 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0061088 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

140

Amino Acids

15.62

Weight (kDa)

7.06

Isoelectric Point (pI)

50.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12100 AT3G12100
fragaria_vesca	FvH4_6g22170
malus_domestica	MD12G1056600.v1.1 MD14G1055100.v1.1
prunus_persica	Prupe.7G077600_v2.0.a1 Prupe.7G077600_v2.0.a1
pyrus_communis	pycom12g05070 pycom14g04540
rosa_chinensis	RchiOBHm_Chr2g0145321 RchiOBHm_Chr3g0479521
rosa_laevigata	RLG00000023562
rosa_multiflora	Rmu_sc0001786.1_g000012 Rmu_sc0004732.1_g000002 Rmu_sc0016947.1_g000001
rosa_roxburghii	Rroxscaffold_6G00402170
rosa_rugosa	Rorug03G0176200
rosa_samantha	Rh3AG227000 Rh3CG257000 Rh3DG252600 Rh3DG352500 Rh4AG055300 Rh4BG053300 Rh5BG537800 Rh5CG561700 Rh7DG359200
rosa_wichuraiana	Rw3G020280 Rw4G012830 Rw6G021660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	313, 414
AatII	GACGTC	1 cut(s)	207
AccI	GTMKAC	1 cut(s)	167
AccII	CGCG	1 cut(s)	142
AccIII	TCCGGA	1 cut(s)	317
AciI	CCGC	4 cut(s)	131, 140, 209, 215
AcoI	YGGCCR	2 cut(s)	216, 261
AcyI	GRCGYC	2 cut(s)	170, 204
AfiI	CCNNNNNNNGG	2 cut(s)	214, 324
AflIII	ACRYGT	1 cut(s)	409
AgsI	TTSAA	1 cut(s)	14
AjiI	CACGTC	1 cut(s)	410
AluBI	AGCT	1 cut(s)	235
AluI	AGCT	1 cut(s)	235
Alw26I	GTCTC	2 cut(s)	196, 331
Aor13HI	TCCGGA	1 cut(s)	317
AoxI	GGCC	2 cut(s)	216, 261
ApeKI	GCWGC	1 cut(s)	61
Asp700I	GAANNNNTTC	1 cut(s)	256
AspLEI	GCGC	1 cut(s)	144
AspS9I	GGNCC	1 cut(s)	315
AsuHPI	GGTGA	1 cut(s)	394
AsuII	TTCGAA	1 cut(s)	291
AvaII	GGWCC	1 cut(s)	315
BbvCI	CCTCAGC	1 cut(s)	311
BbvI	GCAGC	1 cut(s)	48
BccI	CCATC	1 cut(s)	155
BceAI	ACGGC	1 cut(s)	157
BcoDI	GTCTC	2 cut(s)	196, 331
BisI	GCNGC	3 cut(s)	62, 140, 216
BlsI	GCNGC	3 cut(s)	63, 141, 217
Bme18I	GGWCC	1 cut(s)	315
BmgBI	CACGTC	1 cut(s)	410
BmgT120I	GGNCC	1 cut(s)	315
BpmI	CTGGAG	1 cut(s)	178
Bpu10I	CCTNAGC	1 cut(s)	311
Bpu14I	TTCGAA	1 cut(s)	291
BsaHI	GRCGYC	2 cut(s)	170, 204
BsaWI	WCCGGW	2 cut(s)	317, 404
Bsc4I	CCNNNNNNNGG	2 cut(s)	214, 324
Bse118I	RCCGGY	1 cut(s)	211
Bse1I	ACTGG	1 cut(s)	195
BseAI	TCCGGA	1 cut(s)	317
BseLI	CCNNNNNNNGG	2 cut(s)	214, 324
BseMII	CTCAG	1 cut(s)	302
BseNI	ACTGG	1 cut(s)	195
BseRI	GAGGAG	2 cut(s)	63, 66
BseX3I	CGGCCG	2 cut(s)	216, 261
BseXI	GCAGC	1 cut(s)	48
Bsh1236I	CGCG	1 cut(s)	142
Bsh1285I	CGRYCG	2 cut(s)	219, 264
BshFI	GGCC	2 cut(s)	218, 263
BsiEI	CGRYCG	2 cut(s)	219, 264
BsiSI	CCGG	3 cut(s)	212, 318, 405
BslFI	GGGAC	2 cut(s)	166, 191
BslI	CCNNNNNNNGG	2 cut(s)	214, 324
BsmAI	GTCTC	2 cut(s)	196, 331
BsmBI	CGTCTC	1 cut(s)	196
BsmFI	GGGAC	2 cut(s)	166, 191
BsnI	GGCC	2 cut(s)	218, 263
Bsp119I	TTCGAA	1 cut(s)	291
Bsp13I	TCCGGA	1 cut(s)	317
BspACI	CCGC	4 cut(s)	131, 140, 209, 215
BspANI	GGCC	2 cut(s)	218, 263
BspCNI	CTCAG	1 cut(s)	303
BspEI	TCCGGA	1 cut(s)	317
BspFNI	CGCG	1 cut(s)	142
BspT104I	TTCGAA	1 cut(s)	291
BsrFI	RCCGGY	1 cut(s)	211
BsrI	ACTGG	1 cut(s)	195
BssAI	RCCGGY	1 cut(s)	211
BssNI	GRCGYC	2 cut(s)	170, 204
Bst4CI	ACNGT	1 cut(s)	342
Bst6I	CTCTTC	3 cut(s)	247, 329, 404
BstACI	GRCGYC	2 cut(s)	170, 204
BstBI	TTCGAA	1 cut(s)	291
BstC8I	GCNNGC	1 cut(s)	213
BstDEI	CTNAG	1 cut(s)	311
BstFNI	CGCG	1 cut(s)	142
BstHHI	GCGC	1 cut(s)	144
BstMAI	GTCTC	2 cut(s)	196, 331
BstMCI	CGRYCG	2 cut(s)	219, 264
BstMWI	GCNNNNNNNGC	1 cut(s)	139
BstUI	CGCG	1 cut(s)	142
BstV1I	GCAGC	1 cut(s)	48
BstZI	CGGCCG	2 cut(s)	216, 261
BsuRI	GGCC	2 cut(s)	218, 263
BtrI	CACGTC	1 cut(s)	410
Cac8I	GCNNGC	1 cut(s)	213
CfoI	GCGC	1 cut(s)	144
Cfr10I	RCCGGY	1 cut(s)	211
Cfr13I	GGNCC	1 cut(s)	315
CseI	GACGC	3 cut(s)	178, 178, 316
CviJI	RGCY	4 cut(s)	218, 235, 263, 368
CviKI_1	RGCY	4 cut(s)	218, 235, 263, 368
DdeI	CTNAG	1 cut(s)	311
DrdI	GACNNNNNNGTC	2 cut(s)	313, 414
DseDI	GACNNNNNNGTC	2 cut(s)	313, 414
EaeI	YGGCCR	2 cut(s)	216, 261
EagI	CGGCCG	2 cut(s)	216, 261
Eam1104I	CTCTTC	3 cut(s)	247, 329, 404
EarI	CTCTTC	3 cut(s)	247, 329, 404
EclXI	CGGCCG	2 cut(s)	216, 261
Eco47I	GGWCC	1 cut(s)	315
Eco52I	CGGCCG	2 cut(s)	216, 261
Esp3I	CGTCTC	1 cut(s)	196
FaiI	YATR	3 cut(s)	95, 330, 332
FaqI	GGGAC	2 cut(s)	166, 191
FauI	CCCGC	2 cut(s)	138, 216
FauNDI	CATATG	1 cut(s)	330
FblI	GTMKAC	1 cut(s)	167
Fnu4HI	GCNGC	3 cut(s)	62, 140, 216
Fsp4HI	GCNGC	3 cut(s)	62, 140, 216
GlaI	GCGC	1 cut(s)	143
GluI	GCNGC	3 cut(s)	62, 140, 216
GsuI	CTGGAG	1 cut(s)	178
HaeIII	GGCC	2 cut(s)	218, 263
HapII	CCGG	3 cut(s)	212, 318, 405
HgaI	GACGC	3 cut(s)	178, 178, 316
HhaI	GCGC	1 cut(s)	144
Hin1I	GRCGYC	2 cut(s)	170, 204
Hin6I	GCGC	1 cut(s)	142
HinP1I	GCGC	1 cut(s)	142
HincII	GTYRAC	1 cut(s)	168
HindII	GTYRAC	1 cut(s)	168
HindIII	AAGCTT	1 cut(s)	233
HinfI	GANTC	5 cut(s)	4, 100, 161, 293, 396
HpaII	CCGG	3 cut(s)	212, 318, 405
HphI	GGTGA	1 cut(s)	394
Hpy166II	GTNNAC	1 cut(s)	168
Hpy188I	TCNGA	1 cut(s)	306
Hpy188III	TCNNGA	3 cut(s)	89, 318, 349
Hpy8I	GTNNAC	1 cut(s)	168
Hpy99I	CGWCG	3 cut(s)	169, 172, 206
HpyAV	CCTTC	2 cut(s)	66, 242
HpyCH4III	ACNGT	1 cut(s)	342
HpyCH4IV	ACGT	3 cut(s)	204, 363, 409
HpyF10VI	GCNNNNNNNGC	1 cut(s)	139
HpyF3I	CTNAG	1 cut(s)	311
HpySE526I	ACGT	3 cut(s)	204, 363, 409
Hsp92I	GRCGYC	2 cut(s)	170, 204
HspAI	GCGC	1 cut(s)	142
Kpn2I	TCCGGA	1 cut(s)	317
KroI	GCCGGC	1 cut(s)	211
KroNI	GCCGGC	1 cut(s)	213
LmnI	GCTCC	1 cut(s)	149
LpnPI	CCDG	5 cut(s)	197, 208, 225, 331, 418
Lsp1109I	GCAGC	1 cut(s)	48
MaeII	ACGT	3 cut(s)	204, 363, 409
MboII	GAAGA	5 cut(s)	59, 233, 264, 346, 391
MluCI	AATT	1 cut(s)	269
MlyI	GAGTC	3 cut(s)	94, 155, 390
MnlI	CCTC	6 cut(s)	44, 81, 84, 87, 306, 356
MreI	CGCCGGCG	1 cut(s)	211
MroI	TCCGGA	1 cut(s)	317
MroNI	GCCGGC	1 cut(s)	211
MroXI	GAANNNNTTC	1 cut(s)	256
MseI	TTAA	2 cut(s)	50, 272
MspI	CCGG	3 cut(s)	212, 318, 405
MvnI	CGCG	1 cut(s)	142
MwoI	GCNNNNNNNGC	1 cut(s)	139
NaeI	GCCGGC	1 cut(s)	213
NdeI	CATATG	1 cut(s)	330
NgoMIV	GCCGGC	1 cut(s)	211
NmeAIII	GCCGAG	2 cut(s)	289, 406
NspV	TTCGAA	1 cut(s)	291
PcsI	WCGNNNNNNNCGW	2 cut(s)	104, 170
PdiI	GCCGGC	1 cut(s)	213
PdmI	GAANNNNTTC	1 cut(s)	256
PfeI	GAWTC	2 cut(s)	4, 293
PkrI	GCNGC	3 cut(s)	63, 141, 217
PleI	GAGTC	3 cut(s)	94, 155, 390
PpsI	GAGTC	3 cut(s)	94, 155, 390
PspPI	GGNCC	1 cut(s)	315
SalI	GTCGAC	1 cut(s)	166
SaqAI	TTAA	2 cut(s)	50, 272
SatI	GCNGC	3 cut(s)	62, 140, 216
Sau96I	GGNCC	1 cut(s)	315
SchI	GAGTC	3 cut(s)	94, 155, 390
SetI	ASST	9 cut(s)	36, 58, 207, 237, 278, 317, 366, 412, 418
SfuI	TTCGAA	1 cut(s)	291
SgrAI	CRCCGGYG	1 cut(s)	211
SgrDI	CGTCGACG	1 cut(s)	166
SinI	GGWCC	1 cut(s)	315
Sse9I	AATT	1 cut(s)	269
SsiI	CCGC	4 cut(s)	131, 140, 209, 215
TaaI	ACNGT	1 cut(s)	342
TaiI	ACGT	3 cut(s)	207, 366, 412
TaqI	TCGA	5 cut(s)	90, 98, 167, 201, 291
TaqII	GACCGA	1 cut(s)	286
TasI	AATT	1 cut(s)	269
TauI	GCSGC	2 cut(s)	142, 218
TfiI	GAWTC	2 cut(s)	4, 293
Tru1I	TTAA	2 cut(s)	50, 272
Tru9I	TTAA	2 cut(s)	50, 272
TseI	GCWGC	1 cut(s)	61
TspDTI	ATGAA	2 cut(s)	17, 347
VpaK11BI	GGWCC	1 cut(s)	315
XmiI	GTMKAC	1 cut(s)	167
XmnI	GAANNNNTTC	1 cut(s)	256
ZraI	GACGTC	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.