Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0005497

Physical Location & Seq

Genomic Coordinates Forward (+)

43092278 .. 43096301

Gene Structure 4024 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G021660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGAATCACATTGAAATCTCAAACCACCCAAACATCCAAAACGCTTTCTTAAAACCTTCGCTGCTTCTTCCTCCTCCCCTACACTCTCTCGACATATCGACTCTCTCGTTCCACCAATACCACGACCCCCTGCACACGCCGCGCTCCATTAATCTCAACGACTCGTCGACGCCGTTTCTGTTCCTGAGCTTCTCCAGTATCAACGTCCCGCCGGCGGCCGAAGAAAACGACAAGCTTCTTTTCGGCGAAGGAAGAGTTTCGGCCGAGAAATTAACCTTTTTGGCGATATTCGAATCAGTCTTTCGGACGCTGAGGTCCGGAAATCGGCATATGAAGAGACTGTTCCTCTTGATTTCGCTCAACGTGGCTTATTCTACTGCCGAGTTGTGTATTGGACTCTTCACCGGACGTGTAGGTTTGGTGTCAGATGCATTTCATTTAACTTTTGGGAGTGGCTTGTTGAAGTTTTCGCTCTTCGCAATGGCGGCTTCTCGAAAGAAGCCTGATGGAATTTACACTTATGGGTACAAGAGGCTTGAAGTTTTATCAGCTTTTACCAATGCTGTAAGCTTAACTTTGGTAATCTCTCCCCTTGTATCTCTTATTCAAGATCAAATAATGCATTTGTTTCAGTGTGCAACATTACAGCTTGATTTTCAGCTACCTGCTCGCTTTAAGCTGTATTACTCAGCAGAGGGTGAAGAAGGCAAGAAGGAGGCACCTGTTATGATACACATAGCCATTTTGGGTTCTATTGAGCGTATGTTTGCTATACTGTTGGAACACTACAAGGGGAAATATTTGCTTCCATTTGTTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009624 GO:0010035 GO:0010038 GO:0010043 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0032879 GO:0034220 GO:0042221 GO:0042592 GO:0043207 GO:0046873 GO:0046915 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0061088 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

273

Amino Acids

30.63

Weight (kDa)

8.46

Isoelectric Point (pI)

43.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	114 - 210	4.1e-15	Cation efflux transmembrane domain
tRNA-synt_2b	PF00587	206 - 263	7.5e-08	tRNA synthetase class II core domain (G, H, P, S and T)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12100 AT3G12100
fragaria_vesca	FvH4_6g22170
malus_domestica	MD12G1056600.v1.1 MD14G1055100.v1.1
prunus_persica	Prupe.7G077600_v2.0.a1 Prupe.7G077600_v2.0.a1
pyrus_communis	pycom12g05070 pycom14g04540
rosa_chinensis	RchiOBHm_Chr2g0145321 RchiOBHm_Chr3g0479521
rosa_laevigata	RLG00000023562
rosa_multiflora	Rmu_sc0001786.1_g000012 Rmu_sc0004732.1_g000002 Rmu_sc0016947.1_g000001
rosa_roxburghii	Rroxscaffold_6G00402170
rosa_rugosa	Rorug03G0176200
rosa_samantha	Rh3AG227000 Rh3CG257000 Rh3DG252600 Rh3DG352500 Rh4AG055300 Rh4BG053300 Rh5BG537800 Rh5CG561700 Rh7DG359200
rosa_wichuraiana	Rw3G020280 Rw4G012830 Rw6G021660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	313
Acc36I	ACCTGC	1 cut(s)	673
AccB1I	GGYRCC	1 cut(s)	718
AccI	GTMKAC	1 cut(s)	167
AccII	CGCG	1 cut(s)	142
AccIII	TCCGGA	1 cut(s)	317
AciI	CCGC	4 cut(s)	140, 209, 215, 485
AcoI	YGGCCR	2 cut(s)	216, 261
AcsI	RAATTY	1 cut(s)	510
AcyI	GRCGYC	1 cut(s)	170
AfaI	GTAC	1 cut(s)	527
AfiI	CCNNNNNNNGG	2 cut(s)	214, 324
AflIII	ACRYGT	1 cut(s)	409
AgsI	TTSAA	4 cut(s)	14, 463, 539, 608
AjiI	CACGTC	1 cut(s)	410
AluBI	AGCT	7 cut(s)	189, 235, 551, 570, 649, 661, 679
AluI	AGCT	7 cut(s)	189, 235, 551, 570, 649, 661, 679
Alw26I	GTCTC	1 cut(s)	331
Aor13HI	TCCGGA	1 cut(s)	317
AoxI	GGCC	2 cut(s)	216, 261
ApeKI	GCWGC	1 cut(s)	61
ApoI	RAATTY	1 cut(s)	510
AseI	ATTAAT	1 cut(s)	150
Asp700I	GAANNNNTTC	1 cut(s)	256
AspLEI	GCGC	1 cut(s)	144
AspS9I	GGNCC	1 cut(s)	315
AsuHPI	GGTGA	2 cut(s)	394, 710
AsuII	TTCGAA	1 cut(s)	291
AvaII	GGWCC	1 cut(s)	315
BanI	GGYRCC	1 cut(s)	718
BbvCI	CCTCAGC	1 cut(s)	311
BbvI	GCAGC	1 cut(s)	48
BccI	CCATC	1 cut(s)	500
BceAI	ACGGC	1 cut(s)	157
BcoDI	GTCTC	1 cut(s)	331
BfuAI	ACCTGC	1 cut(s)	673
BisI	GCNGC	4 cut(s)	62, 140, 216, 486
BlsI	GCNGC	4 cut(s)	63, 141, 217, 487
Bme18I	GGWCC	1 cut(s)	315
BmgBI	CACGTC	1 cut(s)	410
BmgT120I	GGNCC	1 cut(s)	315
BmiI	GGNNCC	1 cut(s)	720
BmsI	GCATC	1 cut(s)	418
BpmI	CTGGAG	1 cut(s)	178
Bpu10I	CCTNAGC	2 cut(s)	185, 311
Bpu14I	TTCGAA	1 cut(s)	291
BsaHI	GRCGYC	1 cut(s)	170
BsaWI	WCCGGW	2 cut(s)	317, 404
Bsc4I	CCNNNNNNNGG	2 cut(s)	214, 324
Bse118I	RCCGGY	1 cut(s)	211
Bse1I	ACTGG	1 cut(s)	195
Bse3DI	GCAATG	1 cut(s)	486
BseAI	TCCGGA	1 cut(s)	317
BseGI	GGATG	1 cut(s)	33
BseLI	CCNNNNNNNGG	2 cut(s)	214, 324
BseMI	GCAATG	1 cut(s)	486
BseMII	CTCAG	3 cut(s)	176, 302, 702
BseNI	ACTGG	1 cut(s)	195
BseRI	GAGGAG	1 cut(s)	63
BseX3I	CGGCCG	2 cut(s)	216, 261
BseXI	GCAGC	1 cut(s)	48
BsgI	GTGCAG	1 cut(s)	116
Bsh1236I	CGCG	1 cut(s)	142
Bsh1285I	CGRYCG	2 cut(s)	219, 264
BshFI	GGCC	2 cut(s)	218, 263
BshNI	GGYRCC	1 cut(s)	718
BsiEI	CGRYCG	2 cut(s)	219, 264
BsiSI	CCGG	3 cut(s)	212, 318, 405
BslFI	GGGAC	1 cut(s)	191
BslI	CCNNNNNNNGG	2 cut(s)	214, 324
BsmAI	GTCTC	1 cut(s)	331
BsmFI	GGGAC	1 cut(s)	191
BsnI	GGCC	2 cut(s)	218, 263
Bsp119I	TTCGAA	1 cut(s)	291
Bsp13I	TCCGGA	1 cut(s)	317
Bsp143I	GATC	1 cut(s)	610
BspACI	CCGC	4 cut(s)	140, 209, 215, 485
BspANI	GGCC	2 cut(s)	218, 263
BspCNI	CTCAG	3 cut(s)	177, 303, 701
BspEI	TCCGGA	1 cut(s)	317
BspFNI	CGCG	1 cut(s)	142
BspLI	GGNNCC	1 cut(s)	720
BspMI	ACCTGC	1 cut(s)	673
BspQI	GCTCTTC	1 cut(s)	479
BspT104I	TTCGAA	1 cut(s)	291
BspT107I	GGYRCC	1 cut(s)	718
BsrDI	GCAATG	1 cut(s)	486
BsrFI	RCCGGY	1 cut(s)	211
BsrI	ACTGG	1 cut(s)	195
BssAI	RCCGGY	1 cut(s)	211
BssMI	GATC	1 cut(s)	610
BssNI	GRCGYC	1 cut(s)	170
Bst4CI	ACNGT	2 cut(s)	342, 777
Bst6I	CTCTTC	4 cut(s)	247, 329, 404, 479
BstACI	GRCGYC	1 cut(s)	170
BstBI	TTCGAA	1 cut(s)	291
BstC8I	GCNNGC	2 cut(s)	213, 670
BstDEI	CTNAG	3 cut(s)	185, 311, 688
BstF5I	GGATG	1 cut(s)	33
BstFNI	CGCG	1 cut(s)	142
BstHHI	GCGC	1 cut(s)	144
BstKTI	GATC	1 cut(s)	613
BstMAI	GTCTC	1 cut(s)	331
BstMBI	GATC	1 cut(s)	610
BstMCI	CGRYCG	2 cut(s)	219, 264
BstMWI	GCNNNNNNNGC	2 cut(s)	139, 485
BstUI	CGCG	1 cut(s)	142
BstV1I	GCAGC	1 cut(s)	48
BstZI	CGGCCG	2 cut(s)	216, 261
BsuRI	GGCC	2 cut(s)	218, 263
BtrI	CACGTC	1 cut(s)	410
BtsCI	GGATG	1 cut(s)	33
BtsIMutI	CAGTG	1 cut(s)	638
BveI	ACCTGC	1 cut(s)	673
Cac8I	GCNNGC	2 cut(s)	213, 670
CfoI	GCGC	1 cut(s)	144
Cfr10I	RCCGGY	1 cut(s)	211
Cfr13I	GGNCC	1 cut(s)	315
CseI	GACGC	2 cut(s)	178, 316
Csp6I	GTAC	1 cut(s)	526
CviQI	GTAC	1 cut(s)	526
DdeI	CTNAG	3 cut(s)	185, 311, 688
DpnI	GATC	1 cut(s)	612
DpnII	GATC	1 cut(s)	610
DrdI	GACNNNNNNGTC	1 cut(s)	313
DseDI	GACNNNNNNGTC	1 cut(s)	313
EaeI	YGGCCR	2 cut(s)	216, 261
EagI	CGGCCG	2 cut(s)	216, 261
Eam1104I	CTCTTC	4 cut(s)	247, 329, 404, 479
EarI	CTCTTC	4 cut(s)	247, 329, 404, 479
EclXI	CGGCCG	2 cut(s)	216, 261
Eco47I	GGWCC	1 cut(s)	315
Eco52I	CGGCCG	2 cut(s)	216, 261
EcoT22I	ATGCAT	2 cut(s)	433, 624
FalI	AAGNNNNNCTT	2 cut(s)	559, 591
FaqI	GGGAC	1 cut(s)	191
FauI	CCCGC	1 cut(s)	216
FauNDI	CATATG	1 cut(s)	330
FblI	GTMKAC	1 cut(s)	167
Fnu4HI	GCNGC	4 cut(s)	62, 140, 216, 486
FokI	GGATG	1 cut(s)	20
Fsp4HI	GCNGC	4 cut(s)	62, 140, 216, 486
GlaI	GCGC	1 cut(s)	143
GluI	GCNGC	4 cut(s)	62, 140, 216, 486
GsuI	CTGGAG	1 cut(s)	178
HaeIII	GGCC	2 cut(s)	218, 263
HapII	CCGG	3 cut(s)	212, 318, 405
HgaI	GACGC	2 cut(s)	178, 316
HhaI	GCGC	1 cut(s)	144
Hin1I	GRCGYC	1 cut(s)	170
Hin6I	GCGC	1 cut(s)	142
HinP1I	GCGC	1 cut(s)	142
HincII	GTYRAC	1 cut(s)	168
HindII	GTYRAC	1 cut(s)	168
HindIII	AAGCTT	2 cut(s)	233, 568
HinfI	GANTC	5 cut(s)	4, 100, 161, 293, 396
HpaII	CCGG	3 cut(s)	212, 318, 405
HphI	GGTGA	2 cut(s)	394, 710
Hpy166II	GTNNAC	1 cut(s)	168
Hpy188I	TCNGA	2 cut(s)	306, 427
Hpy188III	TCNNGA	6 cut(s)	89, 184, 318, 349, 492, 608
Hpy8I	GTNNAC	1 cut(s)	168
Hpy99I	CGWCG	2 cut(s)	169, 172
HpyAV	CCTTC	4 cut(s)	66, 242, 698, 706
HpyCH4III	ACNGT	2 cut(s)	342, 777
HpyCH4IV	ACGT	3 cut(s)	204, 363, 409
HpyCH4V	TGCA	4 cut(s)	133, 431, 622, 638
HpyF10VI	GCNNNNNNNGC	2 cut(s)	139, 485
HpyF3I	CTNAG	3 cut(s)	185, 311, 688
HpySE526I	ACGT	3 cut(s)	204, 363, 409
Hsp92I	GRCGYC	1 cut(s)	170
HspAI	GCGC	1 cut(s)	142
Kpn2I	TCCGGA	1 cut(s)	317
KroI	GCCGGC	1 cut(s)	211
KroNI	GCCGGC	1 cut(s)	213
Kzo9I	GATC	1 cut(s)	610
LguI	GCTCTTC	1 cut(s)	479
LmnI	GCTCC	1 cut(s)	149
LpnPI	CCDG	9 cut(s)	143, 197, 208, 225, 331, 418, 516, 678, 735
Lsp1109I	GCAGC	1 cut(s)	48
LweI	GCATC	1 cut(s)	418
MaeII	ACGT	3 cut(s)	204, 363, 409
MalI	GATC	1 cut(s)	612
MboI	GATC	1 cut(s)	610
MboII	GAAGA	7 cut(s)	59, 233, 264, 346, 391, 466, 713
MluCI	AATT	2 cut(s)	269, 510
MlyI	GAGTC	3 cut(s)	94, 155, 390
MmeI	TCCRAC	1 cut(s)	759
MnlI	CCTC	7 cut(s)	81, 84, 306, 356, 525, 688, 709
Mph1103I	ATGCAT	2 cut(s)	433, 624
MreI	CGCCGGCG	1 cut(s)	211
MroI	TCCGGA	1 cut(s)	317
MroNI	GCCGGC	1 cut(s)	211
MroXI	GAANNNNTTC	1 cut(s)	256
MseI	TTAA	6 cut(s)	50, 150, 272, 440, 572, 675
MspI	CCGG	3 cut(s)	212, 318, 405
MvnI	CGCG	1 cut(s)	142
MwoI	GCNNNNNNNGC	2 cut(s)	139, 485
NaeI	GCCGGC	1 cut(s)	213
NdeI	CATATG	1 cut(s)	330
NdeII	GATC	1 cut(s)	610
NgoMIV	GCCGGC	1 cut(s)	211
NlaIV	GGNNCC	1 cut(s)	720
NmeAIII	GCCGAG	2 cut(s)	289, 406
NsiI	ATGCAT	2 cut(s)	433, 624
NspV	TTCGAA	1 cut(s)	291
PciSI	GCTCTTC	1 cut(s)	479
PcsI	WCGNNNNNNNCGW	2 cut(s)	104, 170
PdiI	GCCGGC	1 cut(s)	213
PdmI	GAANNNNTTC	1 cut(s)	256
PfeI	GAWTC	2 cut(s)	4, 293
PkrI	GCNGC	4 cut(s)	63, 141, 217, 487
PleI	GAGTC	3 cut(s)	94, 155, 390
PpsI	GAGTC	3 cut(s)	94, 155, 390
PshBI	ATTAAT	1 cut(s)	150
PspN4I	GGNNCC	1 cut(s)	720
PspPI	GGNCC	1 cut(s)	315
RsaI	GTAC	1 cut(s)	527
RsaNI	GTAC	1 cut(s)	526
SalI	GTCGAC	1 cut(s)	166
SapI	GCTCTTC	1 cut(s)	479
SaqAI	TTAA	6 cut(s)	50, 150, 272, 440, 572, 675
SatI	GCNGC	4 cut(s)	62, 140, 216, 486
Sau3AI	GATC	1 cut(s)	610
Sau96I	GGNCC	1 cut(s)	315
SchI	GAGTC	3 cut(s)	94, 155, 390
SfaNI	GCATC	1 cut(s)	418
SfuI	TTCGAA	1 cut(s)	291
SgrAI	CRCCGGYG	1 cut(s)	211
SgrDI	CGTCGACG	1 cut(s)	166
SinI	GGWCC	1 cut(s)	315
Sse9I	AATT	2 cut(s)	269, 510
SsiI	CCGC	4 cut(s)	140, 209, 215, 485
SspI	AATATT	1 cut(s)	800
TaaI	ACNGT	2 cut(s)	342, 777
TaiI	ACGT	3 cut(s)	207, 366, 412
TaqI	TCGA	5 cut(s)	90, 98, 167, 291, 493
TasI	AATT	2 cut(s)	269, 510
TauI	GCSGC	3 cut(s)	142, 218, 488
TfiI	GAWTC	2 cut(s)	4, 293
Tru1I	TTAA	6 cut(s)	50, 150, 272, 440, 572, 675
Tru9I	TTAA	6 cut(s)	50, 150, 272, 440, 572, 675
TscAI	CASTG	1 cut(s)	638
TseI	GCWGC	1 cut(s)	61
TspDTI	ATGAA	3 cut(s)	17, 347, 425
TspRI	CASTG	1 cut(s)	638
VpaK11BI	GGWCC	1 cut(s)	315
VspI	ATTAAT	1 cut(s)	150
XapI	RAATTY	1 cut(s)	510
XmiI	GTMKAC	1 cut(s)	167
XmnI	GAANNNNTTC	1 cut(s)	256
Zsp2I	ATGCAT	2 cut(s)	433, 624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.