Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005497

Physical Location & Seq

Genomic Coordinates Reverse (-)

62963858 .. 62964405

Gene Structure 548 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51518

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGCTGAGGTCCGGAAATCGGCATATGAAGAGACTGTTCCTCTTGATTTCGCTCAACGTGGCTTATTCTACTGCCGAGTTGTGTATTGGACTCTTCACCGGACGTGTAGGTTTGGTGTTAGATGCATTTCATTTAACTTTTGGGTGTGGCTTGTTGACTTTTTCGCTCTTCGCAATGGCGGCTTCTCGAAAGAAGCCTGATGGAATTTACACTTATGGGTACAAGAGGCTTGAAGTTTTGTCAGCTTTTACCAATGCTGTAAGTATTTCACATTTCCCTTCTCTTGCCCCCAACTTTTCTTATAATTCTGGAAACTTTGTTTTTGCATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009624 GO:0010035 GO:0010038 GO:0010043 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0032879 GO:0034220 GO:0042221 GO:0042592 GO:0043207 GO:0046873 GO:0046915 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0061088 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

110

Amino Acids

12.21

Weight (kDa)

9.76

Isoelectric Point (pI)

21.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	12 - 89	2.2e-15	Cation efflux transmembrane domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0005497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12100 AT3G12100
fragaria_vesca	FvH4_6g22170
malus_domestica	MD12G1056600.v1.1 MD14G1055100.v1.1
prunus_persica	Prupe.7G077600_v2.0.a1 Prupe.7G077600_v2.0.a1
pyrus_communis	pycom12g05070 pycom14g04540
rosa_chinensis	RchiOBHm_Chr2g0145321 RchiOBHm_Chr3g0479521
rosa_laevigata	RLG00000023562
rosa_multiflora	Rmu_sc0001786.1_g000012 Rmu_sc0004732.1_g000002 Rmu_sc0016947.1_g000001
rosa_roxburghii	Rroxscaffold_6G00402170
rosa_rugosa	Rorug03G0176200
rosa_samantha	Rh3AG227000 Rh3CG257000 Rh3DG252600 Rh3DG352500 Rh4AG055300 Rh4BG053300 Rh5BG537800 Rh5CG561700 Rh7DG359200
rosa_wichuraiana	Rw3G020280 Rw4G012830 Rw6G021660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	303
AccIII	TCCGGA	1 cut(s)	11
AciI	CCGC	1 cut(s)	179
AcsI	RAATTY	1 cut(s)	204
AfaI	GTAC	1 cut(s)	221
AfiI	CCNNNNNNNGG	1 cut(s)	18
AflIII	ACRYGT	1 cut(s)	103
AgsI	TTSAA	1 cut(s)	233
AjiI	CACGTC	1 cut(s)	104
AluBI	AGCT	1 cut(s)	245
AluI	AGCT	1 cut(s)	245
Alw26I	GTCTC	1 cut(s)	25
Aor13HI	TCCGGA	1 cut(s)	11
ApoI	RAATTY	1 cut(s)	204
AspS9I	GGNCC	1 cut(s)	9
AsuHPI	GGTGA	1 cut(s)	88
AvaII	GGWCC	1 cut(s)	9
BbvCI	CCTCAGC	1 cut(s)	5
BccI	CCATC	1 cut(s)	194
BcoDI	GTCTC	1 cut(s)	25
BisI	GCNGC	1 cut(s)	180
BlsI	GCNGC	1 cut(s)	181
Bme18I	GGWCC	1 cut(s)	9
BmgBI	CACGTC	1 cut(s)	104
BmgT120I	GGNCC	1 cut(s)	9
BmsI	GCATC	1 cut(s)	112
Bpu10I	CCTNAGC	1 cut(s)	5
BsaWI	WCCGGW	2 cut(s)	11, 98
Bsc4I	CCNNNNNNNGG	1 cut(s)	18
Bse3DI	GCAATG	1 cut(s)	180
BseAI	TCCGGA	1 cut(s)	11
BseLI	CCNNNNNNNGG	1 cut(s)	18
BseMI	GCAATG	1 cut(s)	180
BsiSI	CCGG	2 cut(s)	12, 99
BslI	CCNNNNNNNGG	1 cut(s)	18
BsmAI	GTCTC	1 cut(s)	25
Bsp13I	TCCGGA	1 cut(s)	11
BspACI	CCGC	1 cut(s)	179
BspEI	TCCGGA	1 cut(s)	11
BspQI	GCTCTTC	1 cut(s)	173
BsrDI	GCAATG	1 cut(s)	180
Bst4CI	ACNGT	1 cut(s)	36
Bst6I	CTCTTC	3 cut(s)	23, 98, 173
BstDEI	CTNAG	1 cut(s)	5
BstMAI	GTCTC	1 cut(s)	25
BstMWI	GCNNNNNNNGC	1 cut(s)	179
BtrI	CACGTC	1 cut(s)	104
Cfr13I	GGNCC	1 cut(s)	9
Csp6I	GTAC	1 cut(s)	220
CviAII	CATG	1 cut(s)	327
CviJI	RGCY	6 cut(s)	62, 150, 182, 196, 229, 245
CviKI_1	RGCY	6 cut(s)	62, 150, 182, 196, 229, 245
CviQI	GTAC	1 cut(s)	220
DdeI	CTNAG	1 cut(s)	5
Eam1104I	CTCTTC	3 cut(s)	23, 98, 173
EarI	CTCTTC	3 cut(s)	23, 98, 173
Eco47I	GGWCC	1 cut(s)	9
EcoT22I	ATGCAT	1 cut(s)	127
FaeI	CATG	1 cut(s)	330
FaiI	YATR	5 cut(s)	24, 26, 216, 303, 328
FatI	CATG	1 cut(s)	326
FauNDI	CATATG	1 cut(s)	24
Fnu4HI	GCNGC	1 cut(s)	180
Fsp4HI	GCNGC	1 cut(s)	180
GluI	GCNGC	1 cut(s)	180
HapII	CCGG	2 cut(s)	12, 99
Hin1II	CATG	1 cut(s)	330
HincII	GTYRAC	1 cut(s)	156
HindII	GTYRAC	1 cut(s)	156
HinfI	GANTC	1 cut(s)	90
HpaII	CCGG	2 cut(s)	12, 99
HphI	GGTGA	1 cut(s)	88
Hpy166II	GTNNAC	1 cut(s)	156
Hpy188III	TCNNGA	4 cut(s)	12, 43, 186, 309
Hpy8I	GTNNAC	1 cut(s)	156
HpyAV	CCTTC	1 cut(s)	288
HpyCH4III	ACNGT	1 cut(s)	36
HpyCH4IV	ACGT	2 cut(s)	57, 103
HpyCH4V	TGCA	2 cut(s)	125, 326
HpyF10VI	GCNNNNNNNGC	1 cut(s)	179
HpyF3I	CTNAG	1 cut(s)	5
HpySE526I	ACGT	2 cut(s)	57, 103
Hsp92II	CATG	1 cut(s)	330
Kpn2I	TCCGGA	1 cut(s)	11
LguI	GCTCTTC	1 cut(s)	173
LpnPI	CCDG	4 cut(s)	25, 112, 210, 294
LweI	GCATC	1 cut(s)	112
MaeII	ACGT	2 cut(s)	57, 103
MboII	GAAGA	3 cut(s)	40, 85, 160
MluCI	AATT	2 cut(s)	204, 304
MlyI	GAGTC	1 cut(s)	84
MnlI	CCTC	2 cut(s)	50, 219
Mph1103I	ATGCAT	1 cut(s)	127
MroI	TCCGGA	1 cut(s)	11
MseI	TTAA	1 cut(s)	134
MspI	CCGG	2 cut(s)	12, 99
MwoI	GCNNNNNNNGC	1 cut(s)	179
NdeI	CATATG	1 cut(s)	24
NlaIII	CATG	1 cut(s)	330
NmeAIII	GCCGAG	1 cut(s)	100
NsiI	ATGCAT	1 cut(s)	127
PciSI	GCTCTTC	1 cut(s)	173
PkrI	GCNGC	1 cut(s)	181
PleI	GAGTC	1 cut(s)	84
PpsI	GAGTC	1 cut(s)	84
PsiI	TTATAA	1 cut(s)	303
PspPI	GGNCC	1 cut(s)	9
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
SapI	GCTCTTC	1 cut(s)	173
SaqAI	TTAA	1 cut(s)	134
SatI	GCNGC	1 cut(s)	180
Sau96I	GGNCC	1 cut(s)	9
SchI	GAGTC	1 cut(s)	84
SetI	ASST	5 cut(s)	11, 60, 106, 112, 247
SfaNI	GCATC	1 cut(s)	112
SinI	GGWCC	1 cut(s)	9
Sse9I	AATT	2 cut(s)	204, 304
SsiI	CCGC	1 cut(s)	179
TaaI	ACNGT	1 cut(s)	36
TaiI	ACGT	2 cut(s)	60, 106
TaqI	TCGA	1 cut(s)	187
TasI	AATT	2 cut(s)	204, 304
TauI	GCSGC	1 cut(s)	182
Tru1I	TTAA	1 cut(s)	134
Tru9I	TTAA	1 cut(s)	134
TspDTI	ATGAA	2 cut(s)	41, 119
VpaK11BI	GGWCC	1 cut(s)	9
XapI	RAATTY	1 cut(s)	204
Zsp2I	ATGCAT	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.