Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0005497

Physical Location & Seq

Genomic Coordinates Forward (+)

47856370 .. 47856893

Gene Structure 524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG359200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGAAGAGACTGTTCCTCTTGATTTCGCTCAACGTGGCTTGTTCTACTGCCGAGTTGTGTATTGGACTCTTCACCGGACGTGTAGGTTTGGTGTCAGATGCATTTCATTTAACTTTTGGGTGTGGCTTGTTGACGTTTTCGCTCTTCACAATGGCGGCTTCTCGAAAGAAGCCTGATGGAATTTACACTTATGGGTACAAGAGGCTTGAAGTTTTGTCAGCTTTTACCAATGCTGTAAGTATTTCACATTTCCTTTCTCTTGCCCCCAACTTTTCTTATAATTCTGGAAACTTTGTTTTTGCATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009624 GO:0010035 GO:0010038 GO:0010043 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0032879 GO:0034220 GO:0042221 GO:0042592 GO:0043207 GO:0046873 GO:0046915 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0061088 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

102

Amino Acids

11.22

Weight (kDa)

9.22

Isoelectric Point (pI)

15.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	4 - 81	1.4e-15	Cation efflux transmembrane domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12100 AT3G12100
fragaria_vesca	FvH4_6g22170
malus_domestica	MD12G1056600.v1.1 MD14G1055100.v1.1
prunus_persica	Prupe.7G077600_v2.0.a1 Prupe.7G077600_v2.0.a1
pyrus_communis	pycom12g05070 pycom14g04540
rosa_chinensis	RchiOBHm_Chr2g0145321 RchiOBHm_Chr3g0479521
rosa_laevigata	RLG00000023562
rosa_multiflora	Rmu_sc0001786.1_g000012 Rmu_sc0004732.1_g000002 Rmu_sc0016947.1_g000001
rosa_roxburghii	Rroxscaffold_6G00402170
rosa_rugosa	Rorug03G0176200
rosa_samantha	Rh3AG227000 Rh3CG257000 Rh3DG252600 Rh3DG352500 Rh4AG055300 Rh4BG053300 Rh5BG537800 Rh5CG561700 Rh7DG359200
rosa_wichuraiana	Rw3G020280 Rw4G012830 Rw6G021660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	279
AciI	CCGC	1 cut(s)	155
AcsI	RAATTY	1 cut(s)	180
AfaI	GTAC	1 cut(s)	197
AflIII	ACRYGT	1 cut(s)	79
AgsI	TTSAA	1 cut(s)	209
AjiI	CACGTC	1 cut(s)	80
AluBI	AGCT	1 cut(s)	221
AluI	AGCT	1 cut(s)	221
ApoI	RAATTY	1 cut(s)	180
AsuHPI	GGTGA	1 cut(s)	64
BccI	CCATC	1 cut(s)	170
BisI	GCNGC	1 cut(s)	156
BlsI	GCNGC	1 cut(s)	157
BmgBI	CACGTC	1 cut(s)	80
BmsI	GCATC	1 cut(s)	88
BsaWI	WCCGGW	1 cut(s)	74
BsiSI	CCGG	1 cut(s)	75
BspACI	CCGC	1 cut(s)	155
BspQI	GCTCTTC	1 cut(s)	149
Bst4CI	ACNGT	1 cut(s)	12
Bst6I	CTCTTC	2 cut(s)	74, 149
BtrI	CACGTC	1 cut(s)	80
Csp6I	GTAC	1 cut(s)	196
CviAII	CATG	1 cut(s)	303
CviJI	RGCY	6 cut(s)	38, 126, 158, 172, 205, 221
CviKI_1	RGCY	6 cut(s)	38, 126, 158, 172, 205, 221
CviQI	GTAC	1 cut(s)	196
Eam1104I	CTCTTC	2 cut(s)	74, 149
EarI	CTCTTC	2 cut(s)	74, 149
EcoT22I	ATGCAT	1 cut(s)	103
FaeI	CATG	1 cut(s)	306
FaiI	YATR	3 cut(s)	192, 279, 304
FatI	CATG	1 cut(s)	302
Fnu4HI	GCNGC	1 cut(s)	156
Fsp4HI	GCNGC	1 cut(s)	156
GluI	GCNGC	1 cut(s)	156
HapII	CCGG	1 cut(s)	75
Hin1II	CATG	1 cut(s)	306
HincII	GTYRAC	1 cut(s)	132
HindII	GTYRAC	1 cut(s)	132
HinfI	GANTC	1 cut(s)	66
HpaII	CCGG	1 cut(s)	75
HphI	GGTGA	1 cut(s)	64
Hpy166II	GTNNAC	1 cut(s)	132
Hpy188I	TCNGA	1 cut(s)	97
Hpy188III	TCNNGA	3 cut(s)	19, 162, 285
Hpy8I	GTNNAC	1 cut(s)	132
HpyCH4III	ACNGT	1 cut(s)	12
HpyCH4IV	ACGT	3 cut(s)	33, 79, 134
HpyCH4V	TGCA	2 cut(s)	101, 302
HpySE526I	ACGT	3 cut(s)	33, 79, 134
Hsp92II	CATG	1 cut(s)	306
LguI	GCTCTTC	1 cut(s)	149
LpnPI	CCDG	3 cut(s)	88, 186, 270
LweI	GCATC	1 cut(s)	88
MaeII	ACGT	3 cut(s)	33, 79, 134
MboII	GAAGA	3 cut(s)	16, 61, 136
MluCI	AATT	2 cut(s)	180, 280
MlyI	GAGTC	1 cut(s)	60
MnlI	CCTC	2 cut(s)	26, 195
Mph1103I	ATGCAT	1 cut(s)	103
MseI	TTAA	1 cut(s)	110
MspI	CCGG	1 cut(s)	75
NlaIII	CATG	1 cut(s)	306
NmeAIII	GCCGAG	1 cut(s)	76
NsiI	ATGCAT	1 cut(s)	103
PciSI	GCTCTTC	1 cut(s)	149
PkrI	GCNGC	1 cut(s)	157
PleI	GAGTC	1 cut(s)	60
PpsI	GAGTC	1 cut(s)	60
PsiI	TTATAA	1 cut(s)	279
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
SapI	GCTCTTC	1 cut(s)	149
SaqAI	TTAA	1 cut(s)	110
SatI	GCNGC	1 cut(s)	156
SchI	GAGTC	1 cut(s)	60
SetI	ASST	5 cut(s)	36, 82, 88, 137, 223
SfaNI	GCATC	1 cut(s)	88
Sse9I	AATT	2 cut(s)	180, 280
SsiI	CCGC	1 cut(s)	155
TaaI	ACNGT	1 cut(s)	12
TaiI	ACGT	3 cut(s)	36, 82, 137
TaqI	TCGA	1 cut(s)	163
TasI	AATT	2 cut(s)	180, 280
TauI	GCSGC	1 cut(s)	158
Tru1I	TTAA	1 cut(s)	110
Tru9I	TTAA	1 cut(s)	110
TspDTI	ATGAA	2 cut(s)	17, 95
XapI	RAATTY	1 cut(s)	180
Zsp2I	ATGCAT	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.