Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0006627

Physical Location & Seq

Genomic Coordinates Forward (+)

5137221 .. 5138028

Gene Structure 808 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGCAACTCTGAGCACCCCACTCATCTCTCTGCCACGTCACCCAAACCCTTCGTCCCCCACAACGGTCAATAACGACCTTCGCTCCTCAAGCCACACAGCAGTTATACCACAAATTGAGCAATGCACCAACATAGCTCAGCTGAAGCAAGTCCATGCCCAGATGCTCCGTACAGGCCTATTCTTCGACCCCTACTCGACCAGCAAGCTCATCAGCGCCTGCTCTCTCTCCTCGTTCTCGAGCATCGACTATGCTCGCCAAGTGTTCGATCAAATTCCCCACCCAAATCTCTACACTTGGAACACCCTCATTCGGGCTTACGCGTCGAGCGCAGACCCGGTTGAGAGCATTTTCGTATTTCTGGACATGCTTTATGGGTGTTCGGAGTGTCCTAATAAGTATACTTACCCTTTTGTGATTAAGGCGGCTTCGGAGCTACGAGCTTTGCTTACCGGAAGAGCTGTTCATGGAATGGCGATAAAGTCATCGCTTGGTTTGGATATTTACATTCTTAATTCGCTTGTGCATTTTTATGGAACTTGCGGGGATTTGGATTTGGCGCGTAGGGTTTTTGTGAAGACTCCAAAGAAAGATGTTGTGTCTTGGAATTCTGTCATCACGGTTTTTGCGCAGGGGAATTGTCCTGAGGAGGCGTTGGAGTTGTTTAAGGAAATGGAGGCAGAGAATGTGGAGCCCAATGATGTGACAATGGTTGGTGGGTTTGTTTGTATATTGCAAGGAATGGAATTACTGAGAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

254

Amino Acids

28.04

Weight (kDa)

5.85

Isoelectric Point (pI)

46.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	197 - 236	1.9e-10	PPR repeat family
PPR	PF01535	200 - 229	6.7e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29760
fragaria_vesca	FvH4_3g38420
malus_domestica	MD03G1072100.v1.1 MD11G1076100.v1.1 MD11G1076300.v1.1 MD11G1076700.v1.1
prunus_persica	Prupe.6G058800_v2.0.a1
pyrus_communis	pycom03g05830 pycom12g05280
rosa_chinensis	RchiOBHm_Chr5g0069041 RchiOBHm_Chr5g0069081
rosa_laevigata	RLG00000017743 RLG00000036033
rosa_multiflora	Rmu_co8508453.1_g000001 Rmu_sc0000853.1_g000010 Rmu_sc0000853.1_g000011 Rmu_sc0000936.1_g000009
rosa_roxburghii	Rroxscaffold_1G00011680
rosa_rugosa	Rorug05G0395900
rosa_samantha	Rh5AG452500 Rh5AG482500 Rh5BG471800 Rh5BG503600 Rh5CG494200
rosa_wichuraiana	Rw0G006080 Rw5G042280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	630
AccI	GTMKAC	1 cut(s)	401
AccII	CGCG	2 cut(s)	323, 562
AciI	CCGC	2 cut(s)	425, 543
AcsI	RAATTY	2 cut(s)	273, 607
AcuI	CTGAAG	1 cut(s)	164
AfaI	GTAC	1 cut(s)	172
AfiI	CCNNNNNNNGG	3 cut(s)	64, 312, 313
AflIII	ACRYGT	1 cut(s)	321
AjiI	CACGTC	1 cut(s)	38
AloI	GAACNNNNNNTCC	2 cut(s)	447, 479
AluBI	AGCT	6 cut(s)	137, 142, 208, 436, 443, 461
AluI	AGCT	6 cut(s)	137, 142, 208, 436, 443, 461
Alw21I	GWGCWC	1 cut(s)	17
AlwNI	CAGNNNCTG	1 cut(s)	219
Ama87I	CYCGRG	1 cut(s)	238
AoxI	GGCC	1 cut(s)	175
ApoI	RAATTY	2 cut(s)	273, 607
ArsI	GACNNNNNNTTYG	2 cut(s)	38, 70
AspLEI	GCGC	4 cut(s)	218, 332, 562, 631
AsuC2I	CCSGG	1 cut(s)	338
AsuHPI	GGTGA	1 cut(s)	32
AvaI	CYCGRG	1 cut(s)	238
AxyI	CCTNAGG	1 cut(s)	645
BanII	GRGCYC	1 cut(s)	696
BbsI	GAAGAC	1 cut(s)	584
Bbv12I	GWGCWC	1 cut(s)	17
BcnI	CCSGG	1 cut(s)	338
BfoI	RGCGCY	1 cut(s)	219
BisI	GCNGC	1 cut(s)	426
BlpI	GCTNAGC	1 cut(s)	138
BlsI	GCNGC	1 cut(s)	427
Bme1390I	CCNGG	1 cut(s)	338
BmeT110I	CYCGRG	1 cut(s)	238
BmgBI	CACGTC	1 cut(s)	38
BmiI	GGNNCC	1 cut(s)	693
BmrFI	CCNGG	1 cut(s)	338
BmsI	GCATC	2 cut(s)	153, 252
BpiI	GAAGAC	1 cut(s)	584
Bpu1102I	GCTNAGC	1 cut(s)	138
BpuEI	CTTGAG	1 cut(s)	73
BpuMI	CCSGG	1 cut(s)	338
BsaWI	WCCGGW	1 cut(s)	452
BsaXI	ACNNNNNCTCC	2 cut(s)	68, 98
Bsc4I	CCNNNNNNNGG	3 cut(s)	64, 312, 313
Bse21I	CCTNAGG	1 cut(s)	645
Bse3DI	GCAATG	1 cut(s)	128
BseLI	CCNNNNNNNGG	3 cut(s)	64, 312, 313
BseMI	GCAATG	1 cut(s)	128
BseMII	CTCAG	3 cut(s)	152, 636, 743
BseRI	GAGGAG	3 cut(s)	76, 220, 662
Bsh1236I	CGCG	2 cut(s)	323, 562
BshFI	GGCC	1 cut(s)	177
BsiHKAI	GWGCWC	1 cut(s)	17
BsiHKCI	CYCGRG	1 cut(s)	238
BsiSI	CCGG	2 cut(s)	338, 453
BslFI	GGGAC	1 cut(s)	40
BslI	CCNNNNNNNGG	3 cut(s)	64, 312, 313
BsmFI	GGGAC	1 cut(s)	40
BsnI	GGCC	1 cut(s)	177
BsoBI	CYCGRG	1 cut(s)	238
Bsp1286I	GDGCHC	2 cut(s)	17, 696
Bsp143I	GATC	1 cut(s)	268
Bsp1720I	GCTNAGC	1 cut(s)	138
BspACI	CCGC	2 cut(s)	425, 543
BspANI	GGCC	1 cut(s)	177
BspCNI	CTCAG	3 cut(s)	151, 637, 744
BspFNI	CGCG	2 cut(s)	323, 562
BspLI	GGNNCC	1 cut(s)	693
BspQI	GCTCTTC	1 cut(s)	451
BsrDI	GCAATG	1 cut(s)	128
BssMI	GATC	1 cut(s)	268
BssNAI	GTATAC	1 cut(s)	402
Bst1107I	GTATAC	1 cut(s)	402
Bst4CI	ACNGT	2 cut(s)	67, 622
Bst6I	CTCTTC	1 cut(s)	451
BstC8I	GCNNGC	3 cut(s)	206, 220, 256
BstDEI	CTNAG	4 cut(s)	11, 138, 645, 752
BstFNI	CGCG	2 cut(s)	323, 562
BstH2I	RGCGCY	1 cut(s)	219
BstHHI	GCGC	4 cut(s)	218, 332, 562, 631
BstKTI	GATC	1 cut(s)	271
BstMBI	GATC	1 cut(s)	268
BstMWI	GCNNNNNNNGC	2 cut(s)	90, 329
BstNSI	RCATGY	1 cut(s)	370
BstSCI	CCNGG	1 cut(s)	336
BstUI	CGCG	2 cut(s)	323, 562
BstV2I	GAAGAC	1 cut(s)	584
BstZ17I	GTATAC	1 cut(s)	402
Bsu36I	CCTNAGG	1 cut(s)	645
BsuRI	GGCC	1 cut(s)	177
BtgZI	GCGATG	1 cut(s)	471
BtrI	CACGTC	1 cut(s)	38
Cac8I	GCNNGC	3 cut(s)	206, 220, 256
CaiI	CAGNNNCTG	1 cut(s)	219
CfoI	GCGC	4 cut(s)	218, 332, 562, 631
CseI	GACGC	1 cut(s)	312
Csp6I	GTAC	1 cut(s)	171
CviAII	CATG	3 cut(s)	155, 367, 467
CviQI	GTAC	1 cut(s)	171
DdeI	CTNAG	4 cut(s)	11, 138, 645, 752
DpnI	GATC	1 cut(s)	270
DpnII	GATC	1 cut(s)	268
Eam1104I	CTCTTC	1 cut(s)	451
EarI	CTCTTC	1 cut(s)	451
Eco147I	AGGCCT	1 cut(s)	177
Eco24I	GRGCYC	1 cut(s)	696
Eco57I	CTGAAG	1 cut(s)	164
Eco81I	CCTNAGG	1 cut(s)	645
Eco88I	CYCGRG	1 cut(s)	238
EcoRI	GAATTC	1 cut(s)	607
EcoT38I	GRGCYC	1 cut(s)	696
FaeI	CATG	3 cut(s)	158, 370, 470
FaqI	GGGAC	1 cut(s)	40
FatI	CATG	3 cut(s)	154, 366, 466
FauI	CCCGC	1 cut(s)	536
FblI	GTMKAC	1 cut(s)	401
Fnu4HI	GCNGC	1 cut(s)	426
FriOI	GRGCYC	1 cut(s)	696
Fsp4HI	GCNGC	1 cut(s)	426
FspI	TGCGCA	1 cut(s)	630
GlaI	GCGC	4 cut(s)	217, 331, 561, 630
GluI	GCNGC	1 cut(s)	426
HaeII	RGCGCY	1 cut(s)	219
HaeIII	GGCC	1 cut(s)	177
HapII	CCGG	2 cut(s)	338, 453
HgaI	GACGC	1 cut(s)	312
HhaI	GCGC	4 cut(s)	218, 332, 562, 631
Hin1II	CATG	3 cut(s)	158, 370, 470
Hin6I	GCGC	4 cut(s)	216, 330, 560, 629
HinP1I	GCGC	4 cut(s)	216, 330, 560, 629
HinfI	GANTC	1 cut(s)	580
HpaII	CCGG	2 cut(s)	338, 453
HphI	GGTGA	1 cut(s)	32
Hpy166II	GTNNAC	1 cut(s)	402
Hpy188I	TCNGA	3 cut(s)	12, 385, 433
Hpy188III	TCNNGA	3 cut(s)	238, 362, 644
Hpy8I	GTNNAC	1 cut(s)	402
Hpy99I	CGWCG	1 cut(s)	328
HpyAV	CCTTC	2 cut(s)	60, 89
HpyCH4III	ACNGT	2 cut(s)	67, 622
HpyCH4IV	ACGT	1 cut(s)	37
HpyCH4V	TGCA	3 cut(s)	126, 526, 736
HpyF10VI	GCNNNNNNNGC	2 cut(s)	90, 329
HpyF3I	CTNAG	4 cut(s)	11, 138, 645, 752
HpySE526I	ACGT	1 cut(s)	37
Hsp92II	CATG	3 cut(s)	158, 370, 470
HspAI	GCGC	4 cut(s)	216, 330, 560, 629
Kzo9I	GATC	1 cut(s)	268
LguI	GCTCTTC	1 cut(s)	451
LmnI	GCTCC	4 cut(s)	89, 171, 433, 691
LpnPI	CCDG	9 cut(s)	159, 173, 214, 232, 347, 351, 466, 617, 657
LweI	GCATC	2 cut(s)	153, 252
MaeII	ACGT	1 cut(s)	37
MaeIII	GTNAC	2 cut(s)	38, 703
MalI	GATC	1 cut(s)	270
MboI	GATC	1 cut(s)	268
MboII	GAAGA	3 cut(s)	175, 468, 589
MhlI	GDGCHC	2 cut(s)	17, 696
MluCI	AATT	6 cut(s)	114, 273, 514, 607, 637, 746
MluI	ACGCGT	1 cut(s)	321
MlyI	GAGTC	1 cut(s)	574
MmeI	TCCRAC	1 cut(s)	636
MnlI	CCTC	6 cut(s)	97, 241, 317, 640, 643, 670
MseI	TTAA	3 cut(s)	420, 513, 666
MslI	CAYNNNNRTG	1 cut(s)	531
MspA1I	CMGCKG	1 cut(s)	142
MspI	CCGG	2 cut(s)	338, 453
MspR9I	CCNGG	1 cut(s)	338
MvnI	CGCG	2 cut(s)	323, 562
MwoI	GCNNNNNNNGC	2 cut(s)	90, 329
NciI	CCSGG	1 cut(s)	338
NdeII	GATC	1 cut(s)	268
NlaIII	CATG	3 cut(s)	158, 370, 470
NlaIV	GGNNCC	1 cut(s)	693
NmuCI	GTSAC	2 cut(s)	38, 703
NsbI	TGCGCA	1 cut(s)	630
NspI	RCATGY	1 cut(s)	370
PaeR7I	CTCGAG	1 cut(s)	238
PceI	AGGCCT	1 cut(s)	177
PciSI	GCTCTTC	1 cut(s)	451
PkrI	GCNGC	1 cut(s)	427
PleI	GAGTC	1 cut(s)	574
PpsI	GAGTC	1 cut(s)	574
PspN4I	GGNNCC	1 cut(s)	693
PstNI	CAGNNNCTG	1 cut(s)	219
PvuII	CAGCTG	1 cut(s)	142
RsaI	GTAC	1 cut(s)	172
RsaNI	GTAC	1 cut(s)	171
RseI	CAYNNNNRTG	1 cut(s)	531
SapI	GCTCTTC	1 cut(s)	451
SaqAI	TTAA	3 cut(s)	420, 513, 666
SatI	GCNGC	1 cut(s)	426
Sau3AI	GATC	1 cut(s)	268
SchI	GAGTC	1 cut(s)	574
ScrFI	CCNGG	1 cut(s)	338
SduI	GDGCHC	2 cut(s)	17, 696
SetI	ASST	8 cut(s)	40, 81, 139, 144, 210, 438, 445, 463
SfaNI	GCATC	2 cut(s)	153, 252
Sfr274I	CTCGAG	1 cut(s)	238
SlaI	CTCGAG	1 cut(s)	238
SmiMI	CAYNNNNRTG	1 cut(s)	531
SmlI	CTYRAG	2 cut(s)	88, 238
SmoI	CTYRAG	2 cut(s)	88, 238
Sse9I	AATT	6 cut(s)	114, 273, 514, 607, 637, 746
SseBI	AGGCCT	1 cut(s)	177
SsiI	CCGC	2 cut(s)	425, 543
StuI	AGGCCT	1 cut(s)	177
StyD4I	CCNGG	1 cut(s)	336
TaaI	ACNGT	2 cut(s)	67, 622
TaiI	ACGT	1 cut(s)	40
TaqI	TCGA	6 cut(s)	186, 197, 239, 246, 267, 326
TasI	AATT	6 cut(s)	114, 273, 514, 607, 637, 746
TauI	GCSGC	1 cut(s)	428
Tru1I	TTAA	3 cut(s)	420, 513, 666
Tru9I	TTAA	3 cut(s)	420, 513, 666
TseFI	GTSAC	2 cut(s)	38, 703
Tsp45I	GTSAC	2 cut(s)	38, 703
TspDTI	ATGAA	1 cut(s)	455
TspGWI	ACGGA	1 cut(s)	158
XapI	RAATTY	2 cut(s)	273, 607
XceI	RCATGY	1 cut(s)	370
XhoI	CTCGAG	1 cut(s)	238
XmiI	GTMKAC	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.