Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0003513

Physical Location & Seq

Genomic Coordinates Forward (+)

13205838 .. 13207389

Gene Structure 1552 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGGGAGAGCTCCTTGCTGTGACAAGGCAAATGTGAAGAAAGGACCATGGTCACCTGAAGAAGATGCAAAGCTGAAAGAGTACATAGAAAGATATGGAACTGGAGGGAATTGGATTTCTCTTCCACAGAAAGCTGGTCTTAAGAGATGTGGGAAGAGTTGCAGATTAAGATGGCTAAACTATCTCAGGCCCAACATTAAACATGGTGAATTTTCTGATGAAGAAGATAACATAATCTGCAACCTCTTTACTAACATTGGAAGCAGGTGGTCAATTATAGCAGCTCAGTTGCCAGGCCGGACTGACAATGACATAAAAAACTACTGGAACACTAAGCTAAAAAAGAAGCTTATGGGCATAAGCATTCTCCCATCCCAGCGGCTAAAATCTCACTCGTCATCATACCAAGGGAGCAACACCAGCACTAGCTATTACACACAAACCAGGTCTTTCACCAACACTTTGGATCCCATTTCTTTTTCACAAAGTCTCATGAGCAGCACTTCTACTAATGCTGCTGCTGCTTCTGCACTCCAAGTCCCCCAAGAGAGCTTTGTGGGGAGACACATGCATCAGCAGCATTACCAAGTCAAAGATAACATCTTGATGTTTGGAGGTGAAGCAAGTTGCTGCTCTTCTGATGGGAGTTACAGCAATCATCAGATCAGAGAACGAGAGTATGAATATGGTGGTGCTTATGGCGGCGGTGGCGGCGGTTCAACTAATGGGGAGGTGAAGTTACACATGGGTTTAAAAAATTATAATTGTTTTACTGGGTTTGGAGGAGAGCAGAAAATTATGGAGAATAATTCCAGTGGAAATAGTGGGATGTGGGAAGATCAAGCACGATTAGACTATGGACTTGAAGAGATTAAGCAGTTAATTAGCAGTACAGGTAGTTGCAACAACTTTTTGTTTGATGAAAACATGACACAGGAAAAGGTCATGATGTACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009785 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0030154 GO:0030522 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0080090 GO:0097159 GO:0097305 GO:0104004 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

320

Amino Acids

35.69

Weight (kDa)

8.27

Isoelectric Point (pI)

48.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 62	4.9e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 76	7.8e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	69 - 111	1.6e-13	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	71 - 117	6.6e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003513)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36890 AT2G36890 AT5G23000
fragaria_vesca	FvH4_3g30950 FvH4_6g16480
malus_domestica	MD00G1032600.v1.1 MD04G1092400.v1.1 MD11G1146200.v1.1 MD12G1110500.v1.1
prunus_persica	Prupe.6G109200_v2.0.a1 Prupe.7G128800_v2.0.a1 Prupe.7G128800_v2.0.a1
pyrus_communis	pycom04g08690 pycom11g11920 pycom12g11110
rosa_chinensis	RchiOBHm_Chr3g0470381 RchiOBHm_Chr5g0057501
rosa_laevigata	RLG00000024272 RLG00000035160
rosa_multiflora	Rmu_sc0000508.1_g000008 Rmu_sc0002383.1_g000019
rosa_roxburghii	Rroxscaffold_1G00022930 Rroxscaffold_6G00410870
rosa_rugosa	Rorug03G0108200.1 Rorug05G0307600
rosa_samantha	Rh3AG158400 Rh3BG182900 Rh3CG173500 Rh3DG191800 Rh5AG376300 Rh5BG387100 Rh5CG410500 Rh5DG401300
rosa_wichuraiana	Rw3G015040 Rw5G035520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	762
AarI	CACCTGC	1 cut(s)	255
Acc36I	ACCTGC	1 cut(s)	255
AciI	CCGC	5 cut(s)	379, 702, 705, 711, 714
AclWI	GGATC	2 cut(s)	461, 474
AcsI	RAATTY	1 cut(s)	209
AcuI	CTGAAG	1 cut(s)	78
AfaI	GTAC	3 cut(s)	83, 892, 953
AflII	CTTAAG	1 cut(s)	140
AgsI	TTSAA	2 cut(s)	720, 866
AjnI	CCWGG	2 cut(s)	292, 443
AluBI	AGCT	8 cut(s)	11, 73, 134, 284, 337, 349, 429, 552
AluI	AGCT	8 cut(s)	11, 73, 134, 284, 337, 349, 429, 552
Alw21I	GWGCWC	1 cut(s)	13
Alw26I	GTCTC	2 cut(s)	494, 556
AlwI	GGATC	2 cut(s)	461, 474
AoxI	GGCC	2 cut(s)	188, 295
ApeKI	GCWGC	7 cut(s)	281, 498, 515, 518, 521, 577, 630
ApoI	RAATTY	1 cut(s)	209
AspS9I	GGNCC	2 cut(s)	44, 189
AsuHPI	GGTGA	5 cut(s)	45, 218, 445, 629, 745
AvaII	GGWCC	1 cut(s)	44
BamHI	GGATCC	1 cut(s)	466
BanII	GRGCYC	1 cut(s)	13
Bbv12I	GWGCWC	1 cut(s)	13
BbvI	GCAGC	7 cut(s)	293, 502, 505, 508, 510, 589, 617
BccI	CCATC	3 cut(s)	165, 379, 635
BciT130I	CCWGG	2 cut(s)	294, 445
BcoDI	GTCTC	2 cut(s)	494, 556
BfaI	CTAG	1 cut(s)	426
BfrI	CTTAAG	1 cut(s)	140
BfuAI	ACCTGC	1 cut(s)	255
Bme1390I	CCNGG	2 cut(s)	294, 445
Bme18I	GGWCC	1 cut(s)	44
BmgT120I	GGNCC	2 cut(s)	44, 189
BmiI	GGNNCC	1 cut(s)	468
BmrFI	CCNGG	2 cut(s)	294, 445
BmrI	ACTGGG	1 cut(s)	783
BmsI	GCATC	2 cut(s)	55, 580
BmuI	ACTGGG	1 cut(s)	783
BoxI	GACNNNNGTC	1 cut(s)	49
BpmI	CTGGAG	1 cut(s)	123
BsaJI	CCNNGG	2 cut(s)	47, 406
BsaXI	ACNNNNNCTCC	2 cut(s)	722, 752
Bse1I	ACTGG	4 cut(s)	106, 329, 778, 813
BseBI	CCWGG	2 cut(s)	294, 445
BseDI	CCNNGG	2 cut(s)	47, 406
BseGI	GGATG	2 cut(s)	371, 834
BseMII	CTCAG	2 cut(s)	199, 299
BseNI	ACTGG	4 cut(s)	106, 329, 778, 813
BseRI	GAGGAG	1 cut(s)	798
BseXI	GCAGC	7 cut(s)	293, 502, 505, 508, 510, 589, 617
BseYI	CCCAGC	1 cut(s)	375
BsgI	GTGCAG	1 cut(s)	513
BshFI	GGCC	2 cut(s)	190, 297
BsiHKAI	GWGCWC	1 cut(s)	13
BsiSI	CCGG	1 cut(s)	298
BslFI	GGGAC	1 cut(s)	524
BsmAI	GTCTC	2 cut(s)	494, 556
BsmFI	GGGAC	1 cut(s)	524
BsmI	GAATGC	1 cut(s)	363
BsnI	GGCC	2 cut(s)	190, 297
Bsp1286I	GDGCHC	1 cut(s)	13
Bsp143I	GATC	3 cut(s)	466, 663, 838
Bsp19I	CCATGG	1 cut(s)	47
BspACI	CCGC	5 cut(s)	379, 702, 705, 711, 714
BspANI	GGCC	2 cut(s)	190, 297
BspCNI	CTCAG	2 cut(s)	198, 298
BspHI	TCATGA	2 cut(s)	492, 945
BspLI	GGNNCC	1 cut(s)	468
BspMI	ACCTGC	1 cut(s)	255
BspPI	GGATC	2 cut(s)	461, 474
BspQI	GCTCTTC	1 cut(s)	640
BspTI	CTTAAG	1 cut(s)	140
BsrI	ACTGG	4 cut(s)	106, 329, 778, 813
BssECI	CCNNGG	2 cut(s)	47, 406
BssMI	GATC	3 cut(s)	466, 663, 838
BssT1I	CCWWGG	2 cut(s)	47, 406
Bst2UI	CCWGG	2 cut(s)	294, 445
Bst6I	CTCTTC	4 cut(s)	126, 149, 640, 861
BstAFI	CTTAAG	1 cut(s)	140
BstDEI	CTNAG	3 cut(s)	185, 285, 333
BstDSI	CCRYGG	1 cut(s)	47
BstEII	GGTNACC	1 cut(s)	51
BstF5I	GGATG	2 cut(s)	371, 834
BstKTI	GATC	3 cut(s)	469, 666, 841
BstMAI	GTCTC	2 cut(s)	494, 556
BstMBI	GATC	3 cut(s)	466, 663, 838
BstMWI	GCNNNNNNNGC	6 cut(s)	420, 521, 527, 577, 708, 711
BstNI	CCWGG	2 cut(s)	294, 445
BstNSI	RCATGY	1 cut(s)	571
BstPAI	GACNNNNGTC	1 cut(s)	49
BstPI	GGTNACC	1 cut(s)	51
BstSCI	CCNGG	2 cut(s)	292, 443
BstV1I	GCAGC	7 cut(s)	293, 502, 505, 508, 510, 589, 617
BstX2I	RGATCY	1 cut(s)	466
BstXI	CCANNNNNNTGG	1 cut(s)	463
BstYI	RGATCY	1 cut(s)	466
BsuRI	GGCC	2 cut(s)	190, 297
BtgI	CCRYGG	1 cut(s)	47
BtsCI	GGATG	2 cut(s)	371, 834
BtsIMutI	CAGTG	1 cut(s)	820
BveI	ACCTGC	1 cut(s)	255
CciI	TCATGA	2 cut(s)	492, 945
Cfr13I	GGNCC	2 cut(s)	44, 189
CsiI	ACCWGGT	1 cut(s)	443
Csp6I	GTAC	3 cut(s)	82, 891, 952
CviAII	CATG	7 cut(s)	48, 203, 493, 568, 745, 928, 946
CviQI	GTAC	3 cut(s)	82, 891, 952
DdeI	CTNAG	3 cut(s)	185, 285, 333
DpnI	GATC	3 cut(s)	468, 665, 840
DpnII	GATC	3 cut(s)	466, 663, 838
DraI	TTTAAA	1 cut(s)	753
Eam1104I	CTCTTC	4 cut(s)	126, 149, 640, 861
EarI	CTCTTC	4 cut(s)	126, 149, 640, 861
Ecl136II	GAGCTC	1 cut(s)	11
Eco130I	CCWWGG	2 cut(s)	47, 406
Eco24I	GRGCYC	1 cut(s)	13
Eco47I	GGWCC	1 cut(s)	44
Eco53kI	GAGCTC	1 cut(s)	11
Eco57I	CTGAAG	1 cut(s)	78
Eco91I	GGTNACC	1 cut(s)	51
EcoICRI	GAGCTC	1 cut(s)	11
EcoO65I	GGTNACC	1 cut(s)	51
EcoRII	CCWGG	2 cut(s)	292, 443
EcoT14I	CCWWGG	2 cut(s)	47, 406
EcoT22I	ATGCAT	1 cut(s)	573
EcoT38I	GRGCYC	1 cut(s)	13
ErhI	CCWWGG	2 cut(s)	47, 406
FaeI	CATG	7 cut(s)	51, 206, 496, 571, 748, 931, 949
FalI	AAGNNNNNCTT	2 cut(s)	123, 155
FaqI	GGGAC	1 cut(s)	524
FatI	CATG	7 cut(s)	47, 202, 492, 567, 744, 927, 945
FokI	GGATG	2 cut(s)	358, 841
FriOI	GRGCYC	1 cut(s)	13
FspBI	CTAG	1 cut(s)	426
GsaI	CCCAGC	1 cut(s)	379
GsuI	CTGGAG	1 cut(s)	123
HaeIII	GGCC	2 cut(s)	190, 297
HapII	CCGG	1 cut(s)	298
Hin1II	CATG	7 cut(s)	51, 206, 496, 571, 748, 931, 949
HindIII	AAGCTT	1 cut(s)	347
HpaII	CCGG	1 cut(s)	298
HphI	GGTGA	5 cut(s)	45, 218, 445, 629, 745
Hpy188I	TCNGA	4 cut(s)	217, 640, 663, 668
Hpy188III	TCNNGA	3 cut(s)	493, 604, 946
HpyCH4V	TGCA	6 cut(s)	68, 162, 240, 530, 571, 903
HpyF10VI	GCNNNNNNNGC	6 cut(s)	420, 521, 527, 577, 708, 711
HpyF3I	CTNAG	3 cut(s)	185, 285, 333
Hsp92II	CATG	7 cut(s)	51, 206, 496, 571, 748, 931, 949
Kzo9I	GATC	3 cut(s)	466, 663, 838
LguI	GCTCTTC	1 cut(s)	640
LmnI	GCTCC	2 cut(s)	16, 411
Lsp1109I	GCAGC	7 cut(s)	293, 502, 505, 508, 510, 589, 617
LweI	GCATC	2 cut(s)	55, 580
MabI	ACCWGGT	1 cut(s)	443
MaeI	CTAG	1 cut(s)	426
MaeIII	GTNAC	4 cut(s)	20, 51, 647, 738
MalI	GATC	3 cut(s)	468, 665, 840
MboI	GATC	3 cut(s)	466, 663, 838
MflI	RGATCY	1 cut(s)	466
MhlI	GDGCHC	1 cut(s)	13
MluCI	AATT	8 cut(s)	109, 209, 273, 757, 763, 795, 808, 882
MnlI	CCTC	5 cut(s)	98, 254, 608, 724, 776
Mph1103I	ATGCAT	1 cut(s)	573
MseI	TTAA	6 cut(s)	141, 167, 198, 752, 873, 881
MslI	CAYNNNNRTG	1 cut(s)	605
MspA1I	CMGCKG	1 cut(s)	379
MspCI	CTTAAG	1 cut(s)	140
MspI	CCGG	1 cut(s)	298
MspR9I	CCNGG	2 cut(s)	294, 445
Mva1269I	GAATGC	1 cut(s)	363
MvaI	CCWGG	2 cut(s)	294, 445
MwoI	GCNNNNNNNGC	6 cut(s)	420, 521, 527, 577, 708, 711
NcoI	CCATGG	1 cut(s)	47
NdeII	GATC	3 cut(s)	466, 663, 838
NlaIII	CATG	7 cut(s)	51, 206, 496, 571, 748, 931, 949
NlaIV	GGNNCC	1 cut(s)	468
NmuCI	GTSAC	2 cut(s)	20, 51
NsiI	ATGCAT	1 cut(s)	573
NspI	RCATGY	1 cut(s)	571
PagI	TCATGA	2 cut(s)	492, 945
PaqCI	CACCTGC	1 cut(s)	255
PciSI	GCTCTTC	1 cut(s)	640
PctI	GAATGC	1 cut(s)	363
PshAI	GACNNNNGTC	1 cut(s)	49
PsiI	TTATAA	1 cut(s)	762
Psp124BI	GAGCTC	1 cut(s)	13
Psp6I	CCWGG	2 cut(s)	292, 443
PspEI	GGTNACC	1 cut(s)	51
PspFI	CCCAGC	1 cut(s)	375
PspGI	CCWGG	2 cut(s)	292, 443
PspN4I	GGNNCC	1 cut(s)	468
PspPI	GGNCC	2 cut(s)	44, 189
PsuI	RGATCY	1 cut(s)	466
RsaI	GTAC	3 cut(s)	83, 892, 953
RsaNI	GTAC	3 cut(s)	82, 891, 952
RseI	CAYNNNNRTG	1 cut(s)	605
SacI	GAGCTC	1 cut(s)	13
SapI	GCTCTTC	1 cut(s)	640
SaqAI	TTAA	6 cut(s)	141, 167, 198, 752, 873, 881
Sau3AI	GATC	3 cut(s)	466, 663, 838
Sau96I	GGNCC	2 cut(s)	44, 189
ScrFI	CCNGG	2 cut(s)	294, 445
SduI	GDGCHC	1 cut(s)	13
SexAI	ACCWGGT	1 cut(s)	443
SfaNI	GCATC	2 cut(s)	55, 580
SinI	GGWCC	1 cut(s)	44
SmiMI	CAYNNNNRTG	1 cut(s)	605
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
Sse9I	AATT	8 cut(s)	109, 209, 273, 757, 763, 795, 808, 882
SsiI	CCGC	5 cut(s)	379, 702, 705, 711, 714
SspMI	CTAG	1 cut(s)	426
SstI	GAGCTC	1 cut(s)	13
StyD4I	CCNGG	2 cut(s)	292, 443
StyI	CCWWGG	2 cut(s)	47, 406
TasI	AATT	8 cut(s)	109, 209, 273, 757, 763, 795, 808, 882
TatI	WGTACW	3 cut(s)	81, 890, 951
TauI	GCSGC	3 cut(s)	382, 705, 714
Tru1I	TTAA	6 cut(s)	141, 167, 198, 752, 873, 881
Tru9I	TTAA	6 cut(s)	141, 167, 198, 752, 873, 881
TscAI	CASTG	1 cut(s)	820
TseFI	GTSAC	2 cut(s)	20, 51
TseI	GCWGC	7 cut(s)	281, 498, 515, 518, 521, 577, 630
Tsp45I	GTSAC	2 cut(s)	20, 51
TspDTI	ATGAA	3 cut(s)	234, 696, 936
TspRI	CASTG	1 cut(s)	820
Vha464I	CTTAAG	1 cut(s)	140
VpaK11BI	GGWCC	1 cut(s)	44
XapI	RAATTY	1 cut(s)	209
XceI	RCATGY	1 cut(s)	571
XspI	CTAG	1 cut(s)	426
Zsp2I	ATGCAT	1 cut(s)	573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.