pycom13g00290

Cell differentiation protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0003117
Physical Location & Seq
Reverse (-)
211213 .. 215150
3938 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 936 bp
ATGTTCCATTCGGAGGTCCAAGCGTTTCAGCACCAAGTGTCGCTGGAGCTCAAGCAAACAAAGATCGAAAAATGGCATCAGCAGAGCACTTGGTGCTTGACCTTAGTAGAGGATCCTATCGATCTTCGAGAAAACGCGCTTCTTGAACTTTCAAAGAACAAGGAATTATTTCAAGATTTGGCTCCTTTCGTGTGGAATTCTTTTGGTACTATTGCTGCACTCATCCAGGAGATAGTTTCAATATACCCTGTCCTATCACCACCAAATCTGACTCCGGCACAATCCAATCGAGTTTGCAATGCTCTTGCTCTTCTCCAGTGTGTAGCTTCACACCCAGATACAAGAATGTTGTTCCTTAATGCTCATATACCTTTATATCTGTATCCTTTTCTCAATACAACAAGCAAGGCAAGACCATTTGAGTACTTAAGGCTTACTAGTTTAGGAGTCATTGGTGCCCTGGTGAAGGTTGATGATACAGAAGTTATTAGTTTCCTTCTATCAACAGAAATAATTCCACTGTGCCTTCGCACTATGGAATTGGGCAGTGAACTCTCAAAAACAGTTGCCACATTTATAGTTCAAAAGATTTTGTTGGATGATATGGGCTTGGACTATATTTGTACTACAGCAGAGCGGTTTTTTGCCGTAGGTCGAGTTTTGGGGACCATGGTTGCAGCACTGGCTGATCAACCCTCCTCACGCCTTTTGAAACACATCATCCGATGCTATCTTCGATTGTCAGATAATCCAAGGGCTTGTGATGCTTTAAGAAGTTGCCTTCCAGATGTGTTACGAGATGCTAGCTTTAACAATTTCCTTTGTGAAGATCCAACTACTAGGAGGTGGCTGCAACAACTGCTGCAGAACGTTGGAGTGAGCCGGATTCCTGCACTGCAGGCTGGGGGAGGATTTGATCACATGATGGTGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Rcd1

Protein Analysis

312

Amino Acids

35.01

Weight (kDa)

5.98

Isoelectric Point (pI)

51.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rcd1 PF04078 41 - 291 3.4e-122 Cell differentiation family, Rcd1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 455
AccBSI CCGCTC 1 cut(s) 637
AccII CGCG 1 cut(s) 137
AciI CCGC 1 cut(s) 637
AclI AACGTT 1 cut(s) 870
AclWI GGATC 3 cut(s) 107, 120, 824
AcsI RAATTY 1 cut(s) 196
AdeI CACNNNGTG 2 cut(s) 37, 93
AfaI GTAC 3 cut(s) 208, 425, 625
AfiI CCNNNNNNNGG 2 cut(s) 13, 466
AflII CTTAAG 1 cut(s) 427
AgsI TTSAA 6 cut(s) 146, 153, 173, 240, 584, 712
AhlI ACTAGT 1 cut(s) 437
AjnI CCWGG 2 cut(s) 225, 459
AluBI AGCT 3 cut(s) 49, 326, 807
AluI AGCT 3 cut(s) 49, 326, 807
Alw21I GWGCWC 2 cut(s) 51, 89
AlwI GGATC 3 cut(s) 107, 120, 824
ApeKI GCWGC 4 cut(s) 215, 677, 850, 862
ApoI RAATTY 1 cut(s) 196
Asp700I GAANNNNTTC 2 cut(s) 168, 513
AspLEI GCGC 1 cut(s) 139
AspS9I GGNCC 2 cut(s) 16, 666
AsuHPI GGTGA 2 cut(s) 249, 475
AsuNHI GCTAGC 1 cut(s) 803
AvaII GGWCC 2 cut(s) 16, 666
BaeGI GKGCMC 1 cut(s) 460
BaeI ACNNNNGTAYC 2 cut(s) 468, 501
BamHI GGATCC 1 cut(s) 112
BanI GGYRCC 1 cut(s) 455
BanII GRGCYC 1 cut(s) 51
Bbv12I GWGCWC 2 cut(s) 51, 89
BbvI GCAGC 4 cut(s) 202, 689, 837, 849
BccI CCATC 1 cut(s) 919
BceAI ACGGC 1 cut(s) 632
BciT130I CCWGG 2 cut(s) 227, 461
BciVI GTATCC 1 cut(s) 393
BclI TGATCA 2 cut(s) 688, 916
BcuI ACTAGT 1 cut(s) 437
BfaI CTAG 3 cut(s) 438, 804, 840
BfmI CTRYAG 3 cut(s) 627, 863, 896
BfrI CTTAAG 1 cut(s) 427
BfuI GTATCC 1 cut(s) 393
BisI GCNGC 4 cut(s) 216, 678, 851, 863
BlsI GCNGC 4 cut(s) 217, 679, 852, 864
BmcAI AGTACT 1 cut(s) 425
Bme1390I CCNGG 2 cut(s) 227, 461
Bme18I GGWCC 2 cut(s) 16, 666
BmgT120I GGNCC 2 cut(s) 16, 666
BmiI GGNNCC 4 cut(s) 114, 183, 457, 667
BmrFI CCNGG 2 cut(s) 227, 461
BmsI GCATC 4 cut(s) 85, 716, 754, 790
BmtI GCTAGC 1 cut(s) 807
BpmI CTGGAG 2 cut(s) 65, 299
BpuEI CTTGAG 1 cut(s) 35
Bsa29I ATCGAT 1 cut(s) 120
BsaJI CCNNGG 3 cut(s) 459, 669, 752
Bsc4I CCNNNNNNNGG 2 cut(s) 13, 466
Bse1I ACTGG 2 cut(s) 316, 687
Bse3DI GCAATG 1 cut(s) 304
BseBI CCWGG 2 cut(s) 227, 461
BseCI ATCGAT 1 cut(s) 120
BseDI CCNNGG 3 cut(s) 459, 669, 752
BseGI GGATG 3 cut(s) 222, 604, 720
BseLI CCNNNNNNNGG 2 cut(s) 13, 466
BseMI GCAATG 1 cut(s) 304
BseNI ACTGG 2 cut(s) 316, 687
BseRI GAGGAG 1 cut(s) 688
BseSI GKGCMC 1 cut(s) 460
BseXI GCAGC 4 cut(s) 202, 689, 837, 849
BseYI CCCAGC 1 cut(s) 902
BsgI GTGCAG 2 cut(s) 201, 876
Bsh1236I CGCG 1 cut(s) 137
BshNI GGYRCC 1 cut(s) 455
BshVI ATCGAT 1 cut(s) 120
BsiHKAI GWGCWC 2 cut(s) 51, 89
BsiSI CCGG 2 cut(s) 275, 883
BslFI GGGAC 1 cut(s) 679
BslI CCNNNNNNNGG 2 cut(s) 13, 466
BsmFI GGGAC 1 cut(s) 679
Bsp1286I GDGCHC 3 cut(s) 51, 89, 460
Bsp143I GATC 6 cut(s) 63, 112, 121, 688, 829, 916
Bsp19I CCATGG 1 cut(s) 669
BspACI CCGC 1 cut(s) 637
BspDI ATCGAT 1 cut(s) 120
BspFNI CGCG 1 cut(s) 137
BspLI GGNNCC 4 cut(s) 114, 183, 457, 667
BspMAI CTGCAG 2 cut(s) 867, 900
BspOI GCTAGC 1 cut(s) 807
BspPI GGATC 3 cut(s) 107, 120, 824
BspQI GCTCTTC 1 cut(s) 315
BspT107I GGYRCC 1 cut(s) 455
BspTI CTTAAG 1 cut(s) 427
BsrBI CCGCTC 1 cut(s) 637
BsrDI GCAATG 1 cut(s) 304
BsrI ACTGG 2 cut(s) 316, 687
BssECI CCNNGG 3 cut(s) 459, 669, 752
BssMI GATC 6 cut(s) 63, 112, 121, 688, 829, 916
BssT1I CCWWGG 2 cut(s) 669, 752
Bst2UI CCWGG 2 cut(s) 227, 461
Bst4CI ACNGT 2 cut(s) 522, 565
Bst6I CTCTTC 1 cut(s) 315
BstAFI CTTAAG 1 cut(s) 427
BstAPI GCANNNNNTGC 2 cut(s) 93, 859
BstC8I GCNNGC 2 cut(s) 805, 900
BstDEI CTNAG 1 cut(s) 103
BstDSI CCRYGG 1 cut(s) 669
BstENI CCTNNNNNAGG 1 cut(s) 464
BstF5I GGATG 3 cut(s) 222, 604, 720
BstFNI CGCG 1 cut(s) 137
BstHHI GCGC 1 cut(s) 139
BstKTI GATC 6 cut(s) 66, 115, 124, 691, 832, 919
BstMBI GATC 6 cut(s) 63, 112, 121, 688, 829, 916
BstMWI GCNNNNNNNGC 5 cut(s) 93, 683, 764, 859, 899
BstNI CCWGG 2 cut(s) 227, 461
BstSCI CCNGG 2 cut(s) 225, 459
BstSFI CTRYAG 3 cut(s) 627, 863, 896
BstSLI GKGCMC 1 cut(s) 460
BstUI CGCG 1 cut(s) 137
BstV1I GCAGC 4 cut(s) 202, 689, 837, 849
BstX2I RGATCY 2 cut(s) 112, 829
BstYI RGATCY 2 cut(s) 112, 829
Bsu15I ATCGAT 1 cut(s) 120
BsuI GTATCC 1 cut(s) 393
BsuTUI ATCGAT 1 cut(s) 120
BtgI CCRYGG 1 cut(s) 669
BtsCI GGATG 3 cut(s) 222, 604, 720
BtsI GCAGTG 2 cut(s) 553, 893
BtsIMutI CAGTG 5 cut(s) 323, 518, 553, 680, 893
Cac8I GCNNGC 2 cut(s) 805, 900
CfoI GCGC 1 cut(s) 139
Cfr13I GGNCC 2 cut(s) 16, 666
ClaI ATCGAT 1 cut(s) 120
Csp6I GTAC 3 cut(s) 207, 424, 624
CviAII CATG 2 cut(s) 670, 922
CviQI GTAC 3 cut(s) 207, 424, 624
DdeI CTNAG 1 cut(s) 103
DpnI GATC 6 cut(s) 65, 114, 123, 690, 831, 918
DpnII GATC 6 cut(s) 63, 112, 121, 688, 829, 916
DraIII CACNNNGTG 2 cut(s) 37, 93
Eam1104I CTCTTC 1 cut(s) 315
EarI CTCTTC 1 cut(s) 315
Ecl136II GAGCTC 1 cut(s) 49
Eco130I CCWWGG 2 cut(s) 669, 752
Eco24I GRGCYC 1 cut(s) 51
Eco47I GGWCC 2 cut(s) 16, 666
Eco53kI GAGCTC 1 cut(s) 49
EcoICRI GAGCTC 1 cut(s) 49
EcoNI CCTNNNNNAGG 1 cut(s) 464
EcoRI GAATTC 1 cut(s) 196
EcoRII CCWGG 2 cut(s) 225, 459
EcoT14I CCWWGG 2 cut(s) 669, 752
EcoT38I GRGCYC 1 cut(s) 51
ErhI CCWWGG 2 cut(s) 669, 752
FaeI CATG 2 cut(s) 673, 925
FaqI GGGAC 1 cut(s) 679
FatI CATG 2 cut(s) 669, 921
FbaI TGATCA 2 cut(s) 688, 916
Fnu4HI GCNGC 4 cut(s) 216, 678, 851, 863
FokI GGATG 3 cut(s) 209, 611, 707
FriOI GRGCYC 1 cut(s) 51
Fsp4HI GCNGC 4 cut(s) 216, 678, 851, 863
FspBI CTAG 3 cut(s) 438, 804, 840
GlaI GCGC 1 cut(s) 138
GluI GCNGC 4 cut(s) 216, 678, 851, 863
GsaI CCCAGC 1 cut(s) 906
GsuI CTGGAG 2 cut(s) 65, 299
HapII CCGG 2 cut(s) 275, 883
HhaI GCGC 1 cut(s) 139
Hin1II CATG 2 cut(s) 673, 925
Hin6I GCGC 1 cut(s) 137
HinP1I GCGC 1 cut(s) 137
HinfI GANTC 3 cut(s) 271, 447, 886
HpaII CCGG 2 cut(s) 275, 883
HphI GGTGA 2 cut(s) 249, 475
Hpy166II GTNNAC 1 cut(s) 551
Hpy188I TCNGA 4 cut(s) 13, 270, 725, 745
Hpy188III TCNNGA 4 cut(s) 128, 143, 173, 785
Hpy8I GTNNAC 1 cut(s) 551
HpyAV CCTTC 4 cut(s) 460, 506, 536, 791
HpyCH4III ACNGT 2 cut(s) 522, 565
HpyCH4IV ACGT 1 cut(s) 870
HpyCH4V TGCA 7 cut(s) 218, 297, 677, 853, 865, 893, 898
HpyF10VI GCNNNNNNNGC 5 cut(s) 93, 683, 764, 859, 899
HpyF3I CTNAG 1 cut(s) 103
HpySE526I ACGT 1 cut(s) 870
Hsp92II CATG 2 cut(s) 673, 925
HspAI GCGC 1 cut(s) 137
Ksp22I TGATCA 2 cut(s) 688, 916
Kzo9I GATC 6 cut(s) 63, 112, 121, 688, 829, 916
LguI GCTCTTC 1 cut(s) 315
LmnI GCTCC 2 cut(s) 46, 187
Lsp1109I GCAGC 4 cut(s) 202, 689, 837, 849
LweI GCATC 4 cut(s) 85, 716, 754, 790
MaeI CTAG 3 cut(s) 438, 804, 840
MaeII ACGT 1 cut(s) 870
MaeIII GTNAC 1 cut(s) 792
MalI GATC 6 cut(s) 65, 114, 123, 690, 831, 918
MbiI CCGCTC 1 cut(s) 637
MboI GATC 6 cut(s) 63, 112, 121, 688, 829, 916
MboII GAAGA 4 cut(s) 116, 302, 725, 839
MflI RGATCY 2 cut(s) 112, 829
MhlI GDGCHC 3 cut(s) 51, 89, 460
MluCI AATT 6 cut(s) 164, 196, 513, 539, 814, 931
MlyI GAGTC 2 cut(s) 265, 456
MmeI TCCRAC 3 cut(s) 576, 853, 857
MnlI CCTC 6 cut(s) 7, 103, 706, 709, 837, 902
MroXI GAANNNNTTC 2 cut(s) 168, 513
MseI TTAA 4 cut(s) 357, 428, 770, 810
MslI CAYNNNNRTG 1 cut(s) 926
MspCI CTTAAG 1 cut(s) 427
MspI CCGG 2 cut(s) 275, 883
MspR9I CCNGG 2 cut(s) 227, 461
MvaI CCWGG 2 cut(s) 227, 461
MvnI CGCG 1 cut(s) 137
MwoI GCNNNNNNNGC 5 cut(s) 93, 683, 764, 859, 899
NcoI CCATGG 1 cut(s) 669
NdeII GATC 6 cut(s) 63, 112, 121, 688, 829, 916
NheI GCTAGC 1 cut(s) 803
NlaIII CATG 2 cut(s) 673, 925
NlaIV GGNNCC 4 cut(s) 114, 183, 457, 667
PciSI GCTCTTC 1 cut(s) 315
PdmI GAANNNNTTC 2 cut(s) 168, 513
PfeI GAWTC 1 cut(s) 886
PfoI TCCNGGA 1 cut(s) 225
PkrI GCNGC 4 cut(s) 217, 679, 852, 864
PleI GAGTC 2 cut(s) 265, 455
PpsI GAGTC 2 cut(s) 265, 455
Psp124BI GAGCTC 1 cut(s) 51
Psp1406I AACGTT 1 cut(s) 870
Psp6I CCWGG 2 cut(s) 225, 459
PspFI CCCAGC 1 cut(s) 902
PspGI CCWGG 2 cut(s) 225, 459
PspN4I GGNNCC 4 cut(s) 114, 183, 457, 667
PspPI GGNCC 2 cut(s) 16, 666
PstI CTGCAG 2 cut(s) 867, 900
PsuI RGATCY 2 cut(s) 112, 829
RsaI GTAC 3 cut(s) 208, 425, 625
RsaNI GTAC 3 cut(s) 207, 424, 624
RseI CAYNNNNRTG 1 cut(s) 926
SacI GAGCTC 1 cut(s) 51
SapI GCTCTTC 1 cut(s) 315
SaqAI TTAA 4 cut(s) 357, 428, 770, 810
SatI GCNGC 4 cut(s) 216, 678, 851, 863
Sau3AI GATC 6 cut(s) 63, 112, 121, 688, 829, 916
Sau96I GGNCC 2 cut(s) 16, 666
ScaI AGTACT 1 cut(s) 425
SchI GAGTC 2 cut(s) 265, 456
ScrFI CCNGG 2 cut(s) 227, 461
SduI GDGCHC 3 cut(s) 51, 89, 460
SfaNI GCATC 4 cut(s) 85, 716, 754, 790
SfcI CTRYAG 3 cut(s) 627, 863, 896
SinI GGWCC 2 cut(s) 16, 666
SmiMI CAYNNNNRTG 1 cut(s) 926
SmlI CTYRAG 2 cut(s) 50, 427
SmoI CTYRAG 2 cut(s) 50, 427
SpeI ACTAGT 1 cut(s) 437
Sse9I AATT 6 cut(s) 164, 196, 513, 539, 814, 931
SsiI CCGC 1 cut(s) 637
SspMI CTAG 3 cut(s) 438, 804, 840
SstI GAGCTC 1 cut(s) 51
StyD4I CCNGG 2 cut(s) 225, 459
StyI CCWWGG 2 cut(s) 669, 752
TaaI ACNGT 2 cut(s) 522, 565
TaiI ACGT 1 cut(s) 873
TaqI TCGA 6 cut(s) 66, 120, 127, 289, 655, 736
TasI AATT 6 cut(s) 164, 196, 513, 539, 814, 931
TatI WGTACW 2 cut(s) 423, 623
TfiI GAWTC 1 cut(s) 886
Tru1I TTAA 4 cut(s) 357, 428, 770, 810
Tru9I TTAA 4 cut(s) 357, 428, 770, 810
TscAI CASTG 5 cut(s) 323, 525, 553, 687, 900
TseI GCWGC 4 cut(s) 215, 677, 850, 862
TspRI CASTG 5 cut(s) 323, 525, 553, 687, 900
Vha464I CTTAAG 1 cut(s) 427
VpaK11BI GGWCC 2 cut(s) 16, 666
XagI CCTNNNNNAGG 1 cut(s) 464
XapI RAATTY 1 cut(s) 196
XmnI GAANNNNTTC 2 cut(s) 168, 513
XspI CTAG 3 cut(s) 438, 804, 840
ZrmI AGTACT 1 cut(s) 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.