pycom13g05770

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0004384
Physical Location & Seq
Forward (+)
3800233 .. 3801631
1399 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 969 bp
ATGGAAGTTAACCAAATGAGGGTGAGAATTTCCGGCGTAGGACAAGAGAAGACTGAAGAGTCAGGCAGCATCTACGGCCGAAGAATACCGCCGCAGAAAACTGAGTCTTTCAAAGAGAAAAGGAAGACCCAGAACTGGTTCCAGAGACGGCTCTCAGGACAAACGAGTCAGGATTATGATGCTAGTAATGCAATGAAGCATGCAACTGCGGTGGGAGCTGCTGCATTCGCCATCAAATCAATCGAAGATTCGGCCATCTCTGATAAGAAAAAGACGGGCTATGAGCGTAAACCAACTACCGAGAGGATCAAGAGCGGAAAGGAAGAAACAACAATTTCAAAGCCGGTGTCTGGAAGTGGAAGATTTTCCAAAATATTCTCAGGTTCGACGAAAAGGACTCCAGAACGAGAAGATCCACATGGCAAGGTACCAATAAGCACAACCGGGAAGAACCCCGAAAAGGCCGTCCTTCCTGCCCCATCTATCAAGAAAACTCCAACTTTTGCTGATAAACAGTCAAACAGCGCTGGCGGTGTAAACCCTGAAACTGCAGCGCCGAAACCCAATCTGTCCACAACTACGAAACCTGAAAGCGCTTGGAATGAAACCAGGAGGCCGAGTTCAACAGGACCTGGAACAACGAAAACACAAGCAGATATTTGGGAGGAAACTGAGATCGCTAGACTTAAAGAAAGGTATGAGAAAATAAACGCCACAATAGTTGCATGGGAGAAGAAGAAGAAGAAGAAAAGCACAAACCATCTCCATAAAATAGAGAGTGAAGTAGAGCGAAAAAGAGCAAAAGCAGTACTAAAGTTCGGCAGCGAGATGGAAACTATCAAACAGATTGCAGAAGAAGCTAGGGCAAAGGCAGAGGAGAGACATAGGAAAGAAGTCTTGAAGGTGAAAGAAAAGGCAAATGCAATGAGAACAACAGGGAAAGCTCCTAAAACATGCTTCTGCGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

323

Amino Acids

35.86

Weight (kDa)

9.95

Isoelectric Point (pI)

39.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 215 - 317 5.2e-27 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 58, 165
Acc65I GGTACC 1 cut(s) 427
AccB1I GGYRCC 1 cut(s) 427
AccBSI CCGCTC 1 cut(s) 315
AciI CCGC 5 cut(s) 89, 92, 209, 315, 531
AclWI GGATC 2 cut(s) 314, 407
AcoI YGGCCR 2 cut(s) 76, 252
AcsI RAATTY 1 cut(s) 27
AcuI CTGAAG 1 cut(s) 75
AfaI GTAC 2 cut(s) 429, 810
AfeI AGCGCT 2 cut(s) 526, 595
AfiI CCNNNNNNNGG 4 cut(s) 19, 135, 350, 460
AgsI TTSAA 4 cut(s) 112, 339, 624, 901
AjnI CCWGG 2 cut(s) 608, 631
AloI GAACNNNNNNTCC 2 cut(s) 604, 636
AluBI AGCT 3 cut(s) 218, 860, 944
AluI AGCT 3 cut(s) 218, 860, 944
Alw26I GTCTC 2 cut(s) 139, 874
AlwI GGATC 2 cut(s) 314, 407
AlwNI CAGNNNCTG 1 cut(s) 632
Aor51HI AGCGCT 2 cut(s) 526, 595
AoxI GGCC 4 cut(s) 76, 252, 462, 614
ApeKI GCWGC 5 cut(s) 66, 218, 221, 551, 822
ApoI RAATTY 1 cut(s) 27
ArsI GACNNNNNNTTYG 4 cut(s) 332, 364, 450, 482
Asp700I GAANNNNTTC 2 cut(s) 137, 364
Asp718I GGTACC 1 cut(s) 427
AspLEI GCGC 3 cut(s) 527, 556, 596
AspS9I GGNCC 1 cut(s) 629
AsuC2I CCSGG 1 cut(s) 445
AsuHPI GGTGA 2 cut(s) 34, 916
AvaII GGWCC 1 cut(s) 629
BanI GGYRCC 1 cut(s) 427
BbsI GAAGAC 2 cut(s) 56, 131
BbvI GCAGC 5 cut(s) 78, 205, 208, 563, 834
BccI CCATC 5 cut(s) 239, 263, 487, 768, 823
BceAI ACGGC 3 cut(s) 91, 164, 449
BciT130I CCWGG 2 cut(s) 610, 633
BcnI CCSGG 1 cut(s) 445
BcoDI GTCTC 2 cut(s) 139, 874
BfaI CTAG 3 cut(s) 183, 681, 861
BfmI CTRYAG 1 cut(s) 549
BfoI RGCGCY 3 cut(s) 528, 557, 597
BisI GCNGC 6 cut(s) 67, 92, 219, 222, 552, 823
BlsI GCNGC 6 cut(s) 68, 93, 220, 223, 553, 824
BmcAI AGTACT 1 cut(s) 810
Bme1390I CCNGG 3 cut(s) 445, 610, 633
Bme18I GGWCC 1 cut(s) 629
BmgT120I GGNCC 1 cut(s) 629
BmiI GGNNCC 2 cut(s) 140, 429
BmrFI CCNGG 3 cut(s) 445, 610, 633
BmsI GCATC 2 cut(s) 78, 169
BpiI GAAGAC 2 cut(s) 56, 131
BpmI CTGGAG 1 cut(s) 384
BpuMI CCSGG 1 cut(s) 445
BsaXI ACNNNNNCTCC 2 cut(s) 604, 634
Bsc4I CCNNNNNNNGG 4 cut(s) 19, 135, 350, 460
Bse118I RCCGGY 1 cut(s) 343
Bse1I ACTGG 1 cut(s) 140
Bse3DI GCAATG 2 cut(s) 198, 930
BseBI CCWGG 2 cut(s) 610, 633
BseLI CCNNNNNNNGG 4 cut(s) 19, 135, 350, 460
BseMI GCAATG 2 cut(s) 198, 930
BseMII CTCAG 4 cut(s) 93, 168, 393, 663
BseNI ACTGG 1 cut(s) 140
BseRI GAGGAG 1 cut(s) 890
BseX3I CGGCCG 1 cut(s) 76
BseXI GCAGC 5 cut(s) 78, 205, 208, 563, 834
Bsh1285I CGRYCG 1 cut(s) 79
BshFI GGCC 4 cut(s) 78, 254, 464, 616
BshNI GGYRCC 1 cut(s) 427
BsiEI CGRYCG 1 cut(s) 79
BsiSI CCGG 3 cut(s) 33, 344, 444
BslI CCNNNNNNNGG 4 cut(s) 19, 135, 350, 460
BsmAI GTCTC 2 cut(s) 139, 874
BsmBI CGTCTC 1 cut(s) 139
BsmI GAATGC 1 cut(s) 224
BsnI GGCC 4 cut(s) 78, 254, 464, 616
Bsp143I GATC 3 cut(s) 306, 412, 675
BspACI CCGC 5 cut(s) 89, 92, 209, 315, 531
BspANI GGCC 4 cut(s) 78, 254, 464, 616
BspCNI CTCAG 4 cut(s) 94, 167, 392, 664
BspLI GGNNCC 2 cut(s) 140, 429
BspMAI CTGCAG 1 cut(s) 553
BspPI GGATC 2 cut(s) 314, 407
BspT107I GGYRCC 1 cut(s) 427
BsrBI CCGCTC 1 cut(s) 315
BsrDI GCAATG 2 cut(s) 198, 930
BsrFI RCCGGY 1 cut(s) 343
BsrI ACTGG 1 cut(s) 140
BssAI RCCGGY 1 cut(s) 343
BssMI GATC 3 cut(s) 306, 412, 675
Bst2UI CCWGG 2 cut(s) 610, 633
Bst4CI ACNGT 1 cut(s) 516
Bst6I CTCTTC 1 cut(s) 51
BstC8I GCNNGC 2 cut(s) 201, 529
BstDEI CTNAG 4 cut(s) 102, 154, 379, 672
BstH2I RGCGCY 3 cut(s) 528, 557, 597
BstHHI GCGC 3 cut(s) 527, 556, 596
BstKTI GATC 3 cut(s) 309, 415, 678
BstMAI GTCTC 2 cut(s) 139, 874
BstMBI GATC 3 cut(s) 306, 412, 675
BstMCI CGRYCG 1 cut(s) 79
BstMWI GCNNNNNNNGC 5 cut(s) 75, 188, 215, 227, 857
BstNI CCWGG 2 cut(s) 610, 633
BstNSI RCATGY 2 cut(s) 203, 957
BstSCI CCNGG 3 cut(s) 443, 608, 631
BstSFI CTRYAG 1 cut(s) 549
BstV1I GCAGC 5 cut(s) 78, 205, 208, 563, 834
BstV2I GAAGAC 2 cut(s) 56, 131
BstX2I RGATCY 1 cut(s) 412
BstYI RGATCY 1 cut(s) 412
BstZI CGGCCG 1 cut(s) 76
BsuRI GGCC 4 cut(s) 78, 254, 464, 616
Cac8I GCNNGC 2 cut(s) 201, 529
CaiI CAGNNNCTG 1 cut(s) 632
CfoI GCGC 3 cut(s) 527, 556, 596
Cfr10I RCCGGY 1 cut(s) 343
Cfr13I GGNCC 1 cut(s) 629
Csp6I GTAC 2 cut(s) 428, 809
CspCI CAANNNNNGTGG 4 cut(s) 192, 227, 703, 738
CviAII CATG 4 cut(s) 200, 419, 726, 954
CviQI GTAC 2 cut(s) 428, 809
DdeI CTNAG 4 cut(s) 102, 154, 379, 672
DpnI GATC 3 cut(s) 308, 414, 677
DpnII GATC 3 cut(s) 306, 412, 675
DrdI GACNNNNNNGTC 2 cut(s) 58, 165
DseDI GACNNNNNNGTC 2 cut(s) 58, 165
EaeI YGGCCR 2 cut(s) 76, 252
EagI CGGCCG 1 cut(s) 76
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
EclXI CGGCCG 1 cut(s) 76
Eco47I GGWCC 1 cut(s) 629
Eco47III AGCGCT 2 cut(s) 526, 595
Eco52I CGGCCG 1 cut(s) 76
Eco57I CTGAAG 1 cut(s) 75
EcoO109I RGGNCCY 1 cut(s) 629
EcoRII CCWGG 2 cut(s) 608, 631
Esp3I CGTCTC 1 cut(s) 139
FaeI CATG 4 cut(s) 203, 422, 729, 957
FaiI YATR 9 cut(s) 177, 201, 282, 420, 699, 727, 768, 885, 955
FatI CATG 4 cut(s) 199, 418, 725, 953
Fnu4HI GCNGC 6 cut(s) 67, 92, 219, 222, 552, 823
Fsp4HI GCNGC 6 cut(s) 67, 92, 219, 222, 552, 823
FspBI CTAG 3 cut(s) 183, 681, 861
GlaI GCGC 3 cut(s) 526, 555, 595
GluI GCNGC 6 cut(s) 67, 92, 219, 222, 552, 823
GsuI CTGGAG 1 cut(s) 384
HaeII RGCGCY 3 cut(s) 528, 557, 597
HaeIII GGCC 4 cut(s) 78, 254, 464, 616
HapII CCGG 3 cut(s) 33, 344, 444
HhaI GCGC 3 cut(s) 527, 556, 596
Hin1II CATG 4 cut(s) 203, 422, 729, 957
Hin6I GCGC 3 cut(s) 525, 554, 594
HinP1I GCGC 3 cut(s) 525, 554, 594
HincII GTYRAC 1 cut(s) 10
HindII GTYRAC 1 cut(s) 10
HinfI GANTC 5 cut(s) 59, 104, 166, 248, 397
HpaI GTTAAC 1 cut(s) 10
HpaII CCGG 3 cut(s) 33, 344, 444
HphI GGTGA 2 cut(s) 34, 916
Hpy166II GTNNAC 4 cut(s) 10, 290, 538, 573
Hpy188I TCNGA 1 cut(s) 262
Hpy188III TCNNGA 8 cut(s) 142, 156, 170, 310, 351, 401, 487, 898
Hpy8I GTNNAC 4 cut(s) 10, 290, 538, 573
Hpy99I CGWCG 1 cut(s) 391
HpyAV CCTTC 2 cut(s) 479, 895
HpyCH4III ACNGT 1 cut(s) 516
HpyCH4V TGCA 7 cut(s) 191, 203, 224, 551, 725, 851, 923
HpyF10VI GCNNNNNNNGC 5 cut(s) 75, 188, 215, 227, 857
HpyF3I CTNAG 4 cut(s) 102, 154, 379, 672
Hsp92II CATG 4 cut(s) 203, 422, 729, 957
HspAI GCGC 3 cut(s) 525, 554, 594
KpnI GGTACC 1 cut(s) 431
KspAI GTTAAC 1 cut(s) 10
Kzo9I GATC 3 cut(s) 306, 412, 675
LmnI GCTCC 2 cut(s) 215, 949
Lsp1109I GCAGC 5 cut(s) 78, 205, 208, 563, 834
LweI GCATC 2 cut(s) 78, 169
MaeI CTAG 3 cut(s) 183, 681, 861
MalI GATC 3 cut(s) 308, 414, 677
MbiI CCGCTC 1 cut(s) 315
MboI GATC 3 cut(s) 306, 412, 675
MflI RGATCY 1 cut(s) 412
MluCI AATT 2 cut(s) 27, 333
MlyI GAGTC 4 cut(s) 68, 113, 175, 391
MmeI TCCRAC 1 cut(s) 521
MnlI CCTC 5 cut(s) 12, 297, 606, 658, 868
MroXI GAANNNNTTC 2 cut(s) 137, 364
MseI TTAA 2 cut(s) 9, 687
MspI CCGG 3 cut(s) 33, 344, 444
MspR9I CCNGG 3 cut(s) 445, 610, 633
Mva1269I GAATGC 1 cut(s) 224
MvaI CCWGG 2 cut(s) 610, 633
MwoI GCNNNNNNNGC 5 cut(s) 75, 188, 215, 227, 857
NciI CCSGG 1 cut(s) 445
NdeII GATC 3 cut(s) 306, 412, 675
NlaIII CATG 4 cut(s) 203, 422, 729, 957
NlaIV GGNNCC 2 cut(s) 140, 429
NmeAIII GCCGAG 1 cut(s) 642
NspI RCATGY 2 cut(s) 203, 957
PaeI GCATGC 1 cut(s) 203
PctI GAATGC 1 cut(s) 224
PdmI GAANNNNTTC 2 cut(s) 137, 364
PfeI GAWTC 1 cut(s) 248
PkrI GCNGC 6 cut(s) 68, 93, 220, 223, 553, 824
PleI GAGTC 4 cut(s) 67, 112, 174, 391
PpsI GAGTC 4 cut(s) 67, 112, 174, 391
PpuMI RGGWCCY 1 cut(s) 629
Psp5II RGGWCCY 1 cut(s) 629
Psp6I CCWGG 2 cut(s) 608, 631
PspGI CCWGG 2 cut(s) 608, 631
PspN4I GGNNCC 2 cut(s) 140, 429
PspPI GGNCC 1 cut(s) 629
PspPPI RGGWCCY 1 cut(s) 629
PstI CTGCAG 1 cut(s) 553
PstNI CAGNNNCTG 1 cut(s) 632
PsuI RGATCY 1 cut(s) 412
RsaI GTAC 2 cut(s) 429, 810
RsaNI GTAC 2 cut(s) 428, 809
SaqAI TTAA 2 cut(s) 9, 687
SatI GCNGC 6 cut(s) 67, 92, 219, 222, 552, 823
Sau3AI GATC 3 cut(s) 306, 412, 675
Sau96I GGNCC 1 cut(s) 629
ScaI AGTACT 1 cut(s) 810
SchI GAGTC 4 cut(s) 68, 113, 175, 391
ScrFI CCNGG 3 cut(s) 445, 610, 633
SetI ASST 9 cut(s) 220, 385, 429, 589, 634, 698, 862, 906, 946
SfaNI GCATC 2 cut(s) 78, 169
SfcI CTRYAG 1 cut(s) 549
SinI GGWCC 1 cut(s) 629
SphI GCATGC 1 cut(s) 203
Sse9I AATT 2 cut(s) 27, 333
SsiI CCGC 5 cut(s) 89, 92, 209, 315, 531
SspI AATATT 1 cut(s) 375
SspMI CTAG 3 cut(s) 183, 681, 861
StyD4I CCNGG 3 cut(s) 443, 608, 631
TaaI ACNGT 1 cut(s) 516
TaqI TCGA 2 cut(s) 243, 386
TasI AATT 2 cut(s) 27, 333
TatI WGTACW 1 cut(s) 808
TauI GCSGC 1 cut(s) 94
TfiI GAWTC 1 cut(s) 248
Tru1I TTAA 2 cut(s) 9, 687
Tru9I TTAA 2 cut(s) 9, 687
TseI GCWGC 5 cut(s) 66, 218, 221, 551, 822
TspDTI ATGAA 2 cut(s) 209, 618
VpaK11BI GGWCC 1 cut(s) 629
XapI RAATTY 1 cut(s) 27
XceI RCATGY 2 cut(s) 203, 957
XmnI GAANNNNTTC 2 cut(s) 137, 364
XspI CTAG 3 cut(s) 183, 681, 861
ZrmI AGTACT 1 cut(s) 810
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.