pycom13g12640

Vacuolar protein sorting-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0002758
Physical Location & Seq
Forward (+)
8828931 .. 8854247
25317 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 10710 bp
ATGCTGCAGTATTACTACCCACTCTTTGAAGATGGTATAAATGAACCAGCTGCTGCTGCGAATCGCAAGTATTTGGTGTCACCTATAAATGGAGTTTTAAAATATCACCGCATTGGAGATCAAGAAAGAAATGATTCAGAGGTTCCGTTTGAGAAGGCTTCCCTCGTGCTGAGTGATGTTTCTTTGACTGTAATTGAGGCCCAATATTATGATTGGATAAAACTCTTAGAAGTTGTTTCAAGATGCAAGACTTATGTTGTTGTTTCCCATCTGAGACCTGTGGTGCCAGTTTCAGAGGGTCCGTATTTGTGGTGGCATTATGCTGCTAAAGCATCCCTGCAGCAGAAGAAAATGTGTTACCGATTCTCATGGGACCGCATTCGAGATCTTTGTCAGCTTCGTCGCCGTTACATTCAGTTGTACGCCGGTTCACTGCAACACTTGTCAAATGTTAAGAATGCAGAAATTAGAGAAATTGAGAGAGATCTGGATCCTAAAGTAATTCTTTTATGGAGGTTACTTGCACATGCAAAGGTTGAATCTGTTAAAACCAAGGAAGCAGCCGAACAGAGGTCATTCCAGAATCAAAGCTGGTTTTCATTTATGTGGCGTACACCTGCTGAAGATTCTGCCATTGTAGATGCTTCCGAGGGGTCACAGTTAGTGGAAGAAAGACTGACTAAAGAGGAATGGCAGGCAATCCATAAGTTGCTGAGTTATCAGCCAGAAGAAGCACATTCAGGAAAAGACGTGCAGAATATGATCCGATTTTTGGTAACTGTGTCTGTTGGTCAAGCAGCTGCTAGGATCATTGATATAAATCAAACGGAAGTTGTGTGTTGTAGATTTGAGCAACTTCAAGTCTCAACCAAGTTTAAAAATCGAAGTACCTACTGTGATGTGTCCTTAAAATTCTATGGTTTATCTGCACCTGAAGGCTCGCTTGCCCAGAGTGTCTGTAGTGAGCAGAAGGTGAATGCACTAGCTGCTAGCTTTGTACACTGTCCAGTTGGAGAGAATGTTGACTGGAGGCTGTCGGCTACAATTTCTCCCTGCCACGTCACGGTTTTGATGGAAAGCTTTCATCGATTTTTAGAATTTGTGAAAAGGAGTAATGCAGTTAGTCCTACTGTCACGTTGGAAACTGCAACTGCTTTGCAGATGAAAATTGAGCAAGTGACTCGTAGAGCACAGGAGCAATTTCAAATGGTATTAGAAGAACAAAGCAGGTTTGCTCTTGATATCGACTTAGACGCTCCAAAAGTAAGAGTTCCTATCAGAACTTGTGGCTCTTCCAAATGTGATAGCCATTTTCTTTTGGATTTTGGTCATTTCACGCTGCACACCAAGGATAGTCAGCATGATGAACAGAGGCAGAACTTATATTCTCGGTTTTTTATAACTGGAAGAGATATTGCTGCCTTTTTTGTGGATTGCGGTTCTGACCGTCAAAGTTGCACTTTGGATGTACCAGATTATGATAATCACCTGCTTTTATCTCCTACCCCTGACAATGTTGAGAATTGCTATTCTCTGATAGATAGGTGTGGAATGGCTGTACTTGTTGATCAGATCATAGTACCCCACCCAAGTTACCCATCAATGCGCATCTCAATTCAAGTGCCAAACCTTGGGATTCACTTTTCACCATCGAGATTCCAGAGGCTCATGAAATTGTTATACATATTCTGTGGTACATTGGAAACTTGCAATGCCAGTCAGCCTGCTCTTGATGATTTTCAAGCAGAAACTCCATGGAGTTTGTCAGATCTTTCTACAGAAGCTAGAATTTTAGCATGGAGGGGGATTGGCAATTCTGTGGCTACCTGGCAACTATGTTATCTTGTGTTGTCAGGAATAAATCTTTATGTGCTGGAATCTGAAAAGTCACTGAGTCACCAGCGACACACAAGCATGGCTGGTCGACAAGTATATGAGGTTCCCCCAGCAAACATTGGTGGTTCACTGTTTTGTGTCGCTGTAAGTTACAGGGGAATGGAAAATCAAAAGGCTTTGGAGTCTCCTACTACCTTGCTTATAGAGTTTCGGGCTGAGCACGAGAAGGCCATTTGGTTGAAAGGGCTTATACAAGCTACATATCAAGCTTCTGCTCCTCCATCAGTTAATGTATTGGGAGAAACAAGCGATCCCGTAACTGACTATGGTGAAACCCAGACTATGAATTCAAAAACAGCTGACCTTGTTATTAATGGGGCACTGGTGGAGACAAAGATATTCATATATGGAAAGACTGGTGATAAAGTTGATGAAGAATGTTGCGAGACTCTTATTCTTGAGGTTCTTGCCAATGGTGGAAAGTTGCACATGATTCGCTGGGAAGGTGACCTGACACTTAAGATGAAACTGCACTCTTTAAAAATCAAAGATGAGCTTCAAGTTCGTCTGTCAACAACCCCCCAGTATTTAGCTTGCTCCGTGCTAAACAATGACAATCTAGTTTCTTCTCCTGGCATAGTAGATCCACACATGAAAGAAATGTCTGCGTTGCTTCATGAGGATGATGATACTTTTATAGATGCTTTGCCAGATTTTATGTCTATCTCAGATACAGGCTTAGGTTCACAGATAATGGATATGGATACATGTGCAACCACTGAGGACGTCAATGATGATACTGGATTTGCAACTCCACAGGCCATAATTCATGAAAAAAAATTGGTTAAGGAAAAGGTCATTTCTGGTGAGATATTTTATGAGGCGGATGGCGGTGATAATTCAAATTTTGTTTCTGTTACCTTCTTGACTCGGAGTTCTAGCTCGCCTGATTATGATGGTATTGATACGCAGATGAATCTCCGCATGTCAAAATTGGAGTTCTTTTGCAACAGACCCACTCTTGTTGCTTTGATTGATTTCGGCCTGGATTTAAGCTGTGTGTATGATGTGGAAGGTAGTGCAGACATAACTAAGGTTCCAGATGATAAACCTTTGATGAACAAAGAAAAGAATGAAGAAAGTGTCAAAGGGTTGCTGGGTTATGGTAAAGGTCGTGTAGTATTTTATTTAAACATGAATGTTGACAATGTGACTGTGTTTCTTAACAAAGAGGATGGCTCTTCATTTGCAATGTTTGTGCAAGAAAGTTTCCTGCTGGATCTTAAGGTCCACCCAAGTTCTCTTTCCATTGAAGGTACCCTAGGAAATTTTAGGCTACATGATATGTCTCTTGGAACAGATCACTGTTGGGCTTGGCTTTGTGATATACGTAATCCAGGTGTTGAATCCCTTATCAAGTTCAAATTTAACTCCTATAGTGCCGAAGATGATGACTATGAAGGATATGATTACAGTTTGTGTGGCCGACTTTCTGCTGTCCGCATCATTTTCCTCTATAGGTTTGTTCAGGAGATAACAGAATACTTTATGGAACTTGCCACCCCAGAGACCGAAGAGGCAATCAAACTTGTTGACAAAGTGGGAGGCTTCGAGTGGCTAATTCAGAAATATGAGATTGATGGAGCTACAGCGTTGAAGCTGGACCTGTCACTTGATACTCCAATAATCATTGTTCCCAGGAATTCAACAAGCAAAGATTTCATTCAACTTGATCTGGGCCAGCTAAAAGTCACAAATGAGTTTAGTTGGTATGGTTCCCCTGAGAACGATCCTTCAGCTGTCCATATTGATGTCCTTCATGCTGAGATCCTGGGGATCAGCATGTCTGTAGGAATTGACGGTTGCTTAGGCAAATCAATGATACGAGAAGGCAAAGGACTTGATGTTTACGTGAGGAGAAGTTTGAGGGATGTCTTCAAAAAAGTTCCAACATTTGCTCTTGAAGTGAAGGTTGGCTTATTGCACGGTGTCATGTCTGACAAAGAATATAAAGTCATTCTGGACTGTGCATGCATGAACTTATGCGAAGAGCCAAAGCTTCCCCCTAGTTTCCGTGGTGGTAAATCTGGTTCGATGGATACAATGAGACTGCTGGCTGATAAGGTCAACATGAACAGTCAATTCCTACTATCAAAAACTGTTACCATAGTGGCAGTTGTAATTGATAATGCCCTATTGGAATTGTATAACGGCATTCATGCTGAGTCTCCTTTTGCTCAAATTGCTATCGAAGGTCTTTGGGTAACGTATCGGATGACTTCATTGTCAGAGACAGATCTCTACATAACCATTCCGAAATTTTCTGTTGTTGACATTCGCCCCGATACAAAACCTGAAATGCGCCTAATGCTTGGATCATCCGCTGATGATTCCAAGCAAGTTTCTTTTGGAAGTTTGCCCCTTTCCTTAAATACGGGGAGCTTTAGAAAAAAAGACTCTGATGCTGAATTTTCTCATGTGGATTTACCAATATCAACAATGTTCTTGATGGACTATAGATGGCGCAAATCTTCCCAATCATTTGTGGTTAGGGTTCAGCAACCTCGAGTTCTTGTTGTAGCTGATTTCCTTCTGGCTGTGGGTGAGTTTTTTGTGCCTGCATTGCGAACAATAACTGGTAGAGAGGAAGTGATGGATCCTACAAATGATCTTATTGGTAAAAGCTGTAGCATAGTATTCTCTGGACCTATTTACAAACAGATAGAAGATGTGGTGCACTTGTCTCCAAGTAGACAGTTAGTAGCAGATTGTTTGCACATTGATGAATATACATATGATGGATGTGGAAAGACCATCCATTTGAGTGAGGAAACGGACACAAAATATCTTCATTCAACTAGGCCTCATCCCATTATTATAATTGGGTGTGGAAAGAAGTTGCGATTTATGAATGTCAAAATTGAGAATGGTTCTATTTTGAGGAAGTACACACATTTGAGTAATGATAGCAGCTACTCGTTATCTTTTGAGGATGGTGTGGACATCACATTGCTGGACAGTTACTCATCTGATGAGGACAAGAAGAGTCTAGAAGACTCTCATAAATCGTCAGACACCTCAAATATTTCTTCGGATTCTGAAAGTGATCCAAATATGATCCCGAGTTTCAGTTTTGAAGCACAGGTAGTTTCTCCTGAGTTTACCTTCTATGATTCTTCAAAGTCTTGTCTGGATGATTCATATGGTGAAAAGCTTCTCCGTGCAAAGTTGGATTTTAGCTTCATGTATGCATCCAAAGAAAATGATACCTGGGTTCGAGCCCTGGTGAAAGATCGAACAGTTGAGGCTGGTTCTGGTCTTATTGTTCTTGATCCAGTGGATATATCAGGGGGTTACACTTCTGTGAAGGACAAAACAAATATGTCCTTGTTATCAACTGATGTTTGCTTCCATCTTTCACTGAGTGTTGTTTCTCTTATACTTAATTTGCAAACCCAGGCAACATCAGCATTGCAATTCGGAAATTCTATGCCACTGGCTGGATGTACCAATTTTGATCAAATTTGGGTGTCCCCGAAAGAAAATGGTTCCTGTTACAACCTTACCTTTTGGAGGCCTCGAGCACCTTCAAATTATGTTATACTGGGAGATTGTGTGACATCAAGGCCAGTTCCTCCTTCACAGGCAGTAATGGCAGTGAGTAATGCATATGGGCGTGTGCGTCAACCAATTGGTTTTAATCTCATAGGCTTGTTCTCTACTATTCAAGGATTTGGCGGGGGGGATTCTGATGTTGGCAGTGATTGTTCTCTTTGGATGCCCGTAGCACCACCCGGATACATAGCATTGGGTTGTCTAGCAAATATGGGGAAAGAGCAGCCACCTAATCATATAGTTTATTGCCTACGTTCTGATCTTGTTACTTCAACAACATATTCAGAATGCTTATTTTCTTCTCCATCAAATCCTCATTTTGCATCTGGATTTAGCATCTGGCGCGTGGAGAATGTTCTTGGATCATTTCATGCCCATTCTTCTACTGAATGCCCTTCTGAAGACAATTGTTGTAACCTCAATCATCTTCTTCTTTGGAATTGGAATCGGCAACAATCTTCTCCTATAGAATCTGCCTCAAATTTGGCTGTTGACAATAAGTATGTAAGTCACCAAACCAGAAACCAGACTGGAAATTCTTCTCGATGGGATATAGTCAGATCAATTTCAAAGGCAAATAATTGTTTTATGTTGACCCCCAACTTTGAGAGAATCTGGTGGGACAAGGGTAGTGAGCTCCGCCGACCAGTCTCAATATGGCGGCCCATTGCGCGTTGTGGCTATGCTATATTGGGTGATTGCATAACCGAAGGCTTAGAACCTCCAGCTGTGGGCATAATTTTTAAGGCTGATGATCCTGAAATATCTGTGAAACCTGTGCAATTTACTAAAGTTGCCCACGTTGTTGGGAAAGGTTTCGATGAAGTATTCTTTTGGTACCCACTTGCTCCGCCTGGTTATGCATCTCTTGGATGCATAGTCTCCAGGACGGGTGAAGCCCCATGTGTTGATACAATTTGTTGCCCTAGGATGGATTTTGTTAACCAAGCTAATATTCTTGAGGCGCCAATTTCAAGATCTTCGACTTCAAAGGGATCTCAGTGCTGGAGCGTTTGGAGAATTGAAAATCAGGCCTCCACTTTTCTTGCACGGGCTGATTTGAAAAAACCGTCAAGCAGATTGGCTTATGCTATTGGTGATTCCTTGAAGCCAAGGACTAGGGAAAATATAACAGCAGAGGTGAAGCTGAGATGCTTCTCTTTAACTGTTCTAGACAGCTTATGTGGAATGATGAAACCACTTTTTGACACGACAATCACCAATATCAAGCTTGCAACACATGGCCGACTGGAGGCTATGAATGCAGTACTGATTTCCTCTATTGCTGCATCAACATTCAATACTCAATTGGAAGCGTGGGAGCCACTTGTGGAGCCTTTCGATGGAATATTCAAGTTTGAAACTTATGATACTAATGTGCACTCGCCATCAAAATTTGGGAAGACAGTGCGTATTGCTGCCACCAGTATCCTTAATTTAAATGTCAGTGCTGCAAACCTTGAAACTTTTATTGGGAGTGTTCTTTCGTGGAAAAGACAATTAGAACTTGAACAGAAAGCAATGAAGATAAATGAGGAAGCTGGTGGTCTATATGGACAAGGAGAGGACCAGACTCTCTTTGCATTGGATGAAGATGACTTTCAGACTGTAATTGTAGAGAATAAACTTGGGTGTGAGATATATGTGAAAAGAGTTGAGGAAAACTCAGACAGAGTGGACCGGTTACATCATGGTGACTACATTTCCATATGGGTGCCGCCTCCAAGGTTTTCTGATAGGTTCAATGTTGTAGATGAATCTAAGGAAACACGTTATTATGTTGCTATACAGATACACGAAGCCAAGGATTTACCTATTATAGATGATGGTAACAGCCATAATTTCTTCTGTGCTTTGCGCCTTGTTGTTGATAGTCAAGCAACAGATCAACAAAAACTTTTTCCTCAAAGTGCAAGAACAAAATGTGTTAAGCCTGCAGTTTCAGAATTCAATAACTTGAATGAAGGCACGGCGGAATGGAATGAACTTTTCATATTTGAAGTTCCCCGGAAGGGCCCAGCTAAAGTGGAAGTGGAGGTGACAAACCTTGCAGCAAAAGCAGGAAAGGGGGAAGTTGTGGGTGCACTCTCATTTTCTGTTGGGCAAGGTGCAAATGTGTTGAGGAAAATGGCTTCAGTTAGGGTGTTCCATCAAGGTCATGATGTTCAGAACGTAGTATCACATCCACTAAGGGGCAGGGTTCAACATAACAGTACCGAAGACACGGACAAATGTGGATGCCTGCTGGTTTCAACTTCTTATTTCGAGAGGAAAACAACTCCAAGTTTTCAAAGAGATCTAGAGGCTGAAAATGTAACCGATAGAGACATAGGTTTCTCTGTTGGACTTGGCCCGGATGGTGCTTGGCAGAACATTCGGTCACTGCTTCCATTGTCAGTTGTCCCGAAAGGGTTACAGAATGATTTCATGGCGTTGGAAGTTGTTGTGAAAAATGGCAAGAAGCATGCAATATTCAGGGGTCTTGCAACAGTTGTAAATGAGACTGATGTTAAGTTGAAAATTTCAGTCTGTCATGCATCTCGAATTCAAGGTCGTGATTCCTCTCTAAGAAGAAGTGATAGCATAAATCCTGGGAGTTCTTTTACTTTGCCTTGGAGAAGTACATCTAGTGATTCTGACCAGTGCTTACAAATATGTCCTTCCGTTGATCATCCTCAGCCTCCATATTCATGGGGTTCTCTCGTGGCAGTGGGTACTGGTTATACATATGGAAAGGACCTGACTATTATAGATCAGGTTTCACTTTCTAGACAATATACTTCAAAGCAGGAAAATAATTTGCAAAATGTTACTTTCAAGTTGAATCAGCTTGAGAAGAAGGATATACTTTTGTGTTGTACTAGTACCATAAACAAACAGTTTTGGCTTAGTGTCGGGGCGGATGCCTCGGCGCTTCATACTGAACTAAATGCACCTGTTTATGACTGGAAAATATCTGTCCATTCTCCTATGAAGTTGGAAAATCGCCTTTCCTGTCCGGCTGAATTCACAATCTGGGAAAGAACCGGAGATGGAAAATGCATTGAACGACAGCATGGTATGATCTCTTCACGTGGGGGTGTACATATATATTCAGCGGACATTCAGAAACCTTTGTATCTTACATTGTTTGTCGAGGGTGGTTGGGTCCTGGAGAAGGACCCCATTCTTCTTTTGAATCTTTATTCCAATGACCATGTCTCGTCATTCTGGATGGTTCACCAGAAAAGTAAAAGGAGACTGCGCGTGAGTATTGAACGTGACATGGGAGGAACCACTGTTGCACCCAAAACAATAAAGTTTTTTGTTCCGTACTGGATAACTAATGATTCATATATTTCATTGGCATATCGAGTGGTAGAAGTAGAACCTTCGGACAATGCAGATACAGACTCCCTAATGCTTTCTAGGGCAGTCAAGTCTGCAACACCAGCCTTGAGAAGTCCCACAAACTCTAGGGACAGGAAGCATTCTGCCACAAGGAGAAACATTCAAGTACTTGAAGTTATTGAGGACACTAGTCCTGTTCCTAACATGCTTTCTCCACAAGATTATGCTAGCCGTAGTGGGGCTTCGCTGTTTCCATCTCAAAAAGATGTTTATCTGTCCTCACGAGTGGGGCTTTCTGTTGCCATGCATCATTCAGAAATTTACAGTCCTGGGATATCTCTTTTTGAACTGGAAAAGAAGGAAAGGCTTGATGTAAAAGTATTCAGTTCAGATCGATCTTATTACAAGCTTTCAGCGAGACTGAGCATGACCTCAGACAGAACAAAGGTTGTGCACTTCCAGCCCCACACCTTGTTTATTAATAGAGTTGGTTACAGACTCTGCCTGCAACAGTGTGATTCTCAGTCCGTGGCATGGATTCATCCCACGGACTCTCCAAAGCCCTTTTGTTGGCAGTCTAGTGCCAAGGTCGAATTGTTGAAGGTGCGGGTGGATGGTTACAAATGGAGTGCACCATTTAGTGTTTCTAGTGAAGGTGTCATGCGTGTTTGCTTGAAGAAGGATGACGGAAATGATCAACTTCAATTTCGAATAGCTGTAAGAAGTGGAGCTAAGAACTCAAGCTATGAAGTTGTTTTCCGTCCAAACTCTTCCATTAGCCCTTACAGGATTGAAAATCGTTCCATGTTTTTACCCATCCGAATTCGCCAGGTGGATGGTACCAACGATTCATGGAAAGTTCTTCCTCCCAATACAGCAGCTTCTTTTCTATGGGAAGATCTTGGCAGAAGACGTTTATTAGAGATCCTGGTTGAGGGGGAAGACCCATTAAAATCAGGGAAGTATGATATTGATGAGATTTCTGATCACCAAGCCATTCATGTGGGAAATGTGCCTTCTAAAGCTTTACGTGTTACTGTTATAAAAGAAGAGAAAGTGAATGTCATCAAGATCAGTGACTGGATGCCAGAAATTGATCCTTCTGGAATCTTGAGTACAAGCCACTCATCACCTCTGTCTCAGCTTTCTATACAGCAACAATCACCAATGATCGCTGATTGTGAGTTTCATGTTATCATTGAGCTTGCTGAGCTTGGGATATCCATTATTGACCATACACCCGAAGAAATCTTGTACCTTTCGGTCCAGAATCTTGTGTGTGCATATTCAACTGGCTTAGGTTCTGGAATCAGTAGGTTCAAACTTAGAATGCGCGGGATACAATTGGATAACCAGTTGCCCCTTAGTCCAACTCCAGTTCTTTTTAGACCTCAGAAAGTTGGAGATGATACTGACTATATCTTGAAAGTTTCAGTCACAATGCAATCAAATGGGTCACTAGATCTATGTGTCTATCCATATATCGGTCTCCAGGGACCTGAAAACTCTGCCTTTTTGGTAAACATTCATGAGCCAATTATTTGGCGCCTTCATGAGATGATTCAGCAGGTCAACCTCAGTCGGTTGTCTGATACTCAAACAACTGCTGTTTCTGTTGATCCGATTATTGAAATTGGAGTTCTTAGCATTTCAGAGGTTCGATTCAAAGTGTCAATGGCTATGTCACCTAGTCAGCGGCCAAGAGGCGTCCTTGGCTTTTGGGCATCTTTGATGACTGCATTGGGGAACACTGAGAATATGCCAGTGAGGATATACCAAAAGTTTAATGAGAATGTGTGCATGAGGCAGAGTTCAATGATTAGTATTGCTATTTCAAACGCTCAAAAGGATCGATTAGGCCTCAACCTCTTCAACTGCTATCTGGTGTTGATATATTGGGCAATGCAAGTAGTGCCCTTGGACATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2 Chorein_N Pex24p SHR-BD VPS13 VPS13_C VPS13_mid_rpt Vps62

Protein Analysis

3570

Amino Acids

399.69

Weight (kDa)

5.65

Isoelectric Point (pI)

42.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VPS13_N PF12624 19 - 459 2.7e-31 VPS13-like family N-terminal region
VPS13_M PF25033 1107 - 1300 2.2e-06 VPS13-like family middle region
Vps62 PF06101 1763 - 1933 4.5e-11 Vacuolar protein sorting-associated protein 62
Vps62 PF06101 2019 - 2158 3e-08 Vacuolar protein sorting-associated protein 62
VPS13_VAB PF25036 2634 - 3208 1.3e-22 Vacuolar-sorting associated protein 13, adaptor binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 1400, 4715, 9824
AarI CACCTGC 2 cut(s) 625, 1497
AasI GACNNNNNNGTC 1 cut(s) 4120
AatII GACGTC 1 cut(s) 2625
Acc16I TGCGCA 1 cut(s) 1607
Acc36I ACCTGC 4 cut(s) 625, 1218, 1497, 10339
Acc65I GGTACC 3 cut(s) 3152, 6288, 9620
AccB1I GGYRCC 7 cut(s) 283, 3152, 6288, 6415, 7165, 9620, 10326
AccB7I CCANNNNNTGG 2 cut(s) 1631, 5336
AccI GTMKAC 2 cut(s) 1924, 4588
AccII CGCG 4 cut(s) 5796, 6124, 8697, 10116
AcoI YGGCCR 3 cut(s) 3319, 6694, 10478
AcuI CTGAAG 5 cut(s) 642, 954, 3615, 5871, 7569
AcvI CACGTG 1 cut(s) 8525
AcyI GRCGYC 4 cut(s) 2622, 6416, 10327, 10488
AdeI CACNNNGTG 1 cut(s) 5261
AflII CTTAAG 2 cut(s) 2354, 3119
AflIII ACRYGT 3 cut(s) 2603, 7220, 9811
AgeI ACCGGT 1 cut(s) 7131
AhlI ACTAGT 2 cut(s) 8312, 8969
AjiI CACGTC 2 cut(s) 751, 1060
AjuI GAANNNNNNNTTGG 8 cut(s) 3124, 3156, 3792, 3824, 6390, 6422, 6906, 6938
AleI CACNNNNGTG 1 cut(s) 5198
Alw21I GWGCWC 9 cut(s) 1192, 2058, 4575, 5422, 6090, 6834, 7537, 9237, 9415
Alw44I GTGCAC 5 cut(s) 4571, 6830, 7533, 9233, 9411
AlwNI CAGNNNCTG 3 cut(s) 53, 9282, 9861
Ama87I CYCGRG 3 cut(s) 4401, 4957, 5415
ApaI GGGCCC 1 cut(s) 7469
ApaLI GTGCAC 5 cut(s) 4571, 6830, 7533, 9233, 9411
ArsI GACNNNNNNTTYG 4 cut(s) 4639, 4671, 7987, 8019
AseI ATTAAT 2 cut(s) 2208, 9261
AsiGI ACCGGT 1 cut(s) 7131
Asp700I GAANNNNTTC 6 cut(s) 133, 1080, 5049, 5989, 6266, 7874
Asp718I GGTACC 3 cut(s) 3152, 6288, 9620
AspA2I CCTAGG 2 cut(s) 3157, 6377
AsuC2I CCSGG 3 cut(s) 5631, 7459, 7805
AsuII TTCGAA 1 cut(s) 9490
AsuNHI GCTAGC 2 cut(s) 989, 9008
AvaI CYCGRG 3 cut(s) 4401, 4957, 5415
AvrII CCTAGG 2 cut(s) 3157, 6377
BaeGI GKGCMC 8 cut(s) 2218, 4575, 6834, 7469, 7537, 9237, 9415, 10698
BaeI ACNNNNGTAYC 6 cut(s) 5094, 5127, 6813, 6846, 8552, 8585
BamHI GGATCC 2 cut(s) 490, 4492
BanI GGYRCC 7 cut(s) 283, 3152, 6288, 6415, 7165, 9620, 10326
BanII GRGCYC 3 cut(s) 5119, 6090, 7469
BarI GAAGNNNNNNTAC 4 cut(s) 8503, 8535, 9007, 9039
BauI CACGAG 4 cut(s) 164, 2057, 8153, 9063
BbrPI CACGTG 1 cut(s) 8525
BbsI GAAGAC 7 cut(s) 3763, 4896, 5859, 6860, 7677, 9697, 9729
Bbv12I GWGCWC 9 cut(s) 1192, 2058, 4575, 5422, 6090, 6834, 7537, 9237, 9415
BbvCI CCTCAGC 1 cut(s) 8127
BceAI ACGGC 4 cut(s) 390, 4063, 7437, 8997
BcgI CGANNNNNNTGC 6 cut(s) 1163, 1197, 2312, 2346, 7808, 7842
BciVI GTATCC 5 cut(s) 2593, 3928, 5627, 6890, 10113
BclI TGATCA 5 cut(s) 1567, 5353, 8119, 9475, 9766
BcnI CCSGG 3 cut(s) 5631, 7459, 7805
BcuI ACTAGT 2 cut(s) 8312, 8969
BfoI RGCGCY 3 cut(s) 6419, 8366, 10330
BfrI CTTAAG 2 cut(s) 2354, 3119
BfuAI ACCTGC 4 cut(s) 625, 1218, 1497, 10339
BfuI GTATCC 5 cut(s) 2593, 3928, 5627, 6890, 10113
BglII AGATCT 8 cut(s) 385, 484, 1768, 4132, 6428, 7747, 9679, 10243
BlnI CCTAGG 2 cut(s) 3157, 6377
BlpI GCTNAGC 2 cut(s) 2052, 9990
BmcAI AGTACT 2 cut(s) 6720, 8949
BmeT110I CYCGRG 3 cut(s) 4401, 4957, 5415
BmgBI CACGTC 2 cut(s) 751, 1060
BmrI ACTGGG 2 cut(s) 2413, 5450
BmtI GCTAGC 2 cut(s) 993, 9012
BmuI ACTGGG 2 cut(s) 2413, 5450
BoxI GACNNNNGTC 1 cut(s) 8970
BpiI GAAGAC 7 cut(s) 3763, 4896, 5859, 6860, 7677, 9697, 9729
BplI GAGNNNNNCTC 4 cut(s) 3059, 3091, 7100, 7132
BpmI CTGGAG 8 cut(s) 1048, 6159, 6319, 6478, 6722, 8624, 10140, 10256
Bpu10I CCTNAGC 4 cut(s) 2575, 3703, 8127, 10078
Bpu1102I GCTNAGC 2 cut(s) 2052, 9990
Bpu14I TTCGAA 1 cut(s) 9490
BpuEI CTTGAG 6 cut(s) 2315, 6431, 8303, 8908, 9505, 9913
BpuMI CCSGG 3 cut(s) 5631, 7459, 7805
Bsa29I ATCGAT 3 cut(s) 1087, 9175, 10633
BsaAI YACGTR 4 cut(s) 3227, 3748, 8525, 9812
BsaBI GATNNNNATC 3 cut(s) 489, 819, 9051
BsaHI GRCGYC 4 cut(s) 2622, 6416, 10327, 10488
BsaI GGTCTC 3 cut(s) 268, 3398, 10274
BsaWI WCCGGW 2 cut(s) 7131, 8477
BsaXI ACNNNNNCTCC 8 cut(s) 1005, 1033, 1035, 1063, 5436, 5466, 9319, 9349
Bse118I RCCGGY 2 cut(s) 425, 7131
Bse3DI GCAATG 8 cut(s) 1717, 3093, 4457, 4844, 5306, 6117, 6978, 10689
Bse8I GATNNNNATC 3 cut(s) 489, 819, 9051
BseCI ATCGAT 3 cut(s) 1087, 9175, 10633
BseJI GATNNNNATC 3 cut(s) 489, 819, 9051
BseMI GCAATG 8 cut(s) 1717, 3093, 4457, 4844, 5306, 6117, 6978, 10689
BseRI GAGGAG 2 cut(s) 2103, 3766
BseSI GKGCMC 8 cut(s) 2218, 4575, 6834, 7469, 7537, 9237, 9415, 10698
BseYI CCCAGC 4 cut(s) 1945, 2334, 2992, 7468
BsgI GTGCAG 5 cut(s) 773, 912, 1325, 2351, 2937
Bsh1236I CGCG 4 cut(s) 5796, 6124, 8697, 10116
BshNI GGYRCC 7 cut(s) 283, 3152, 6288, 6415, 7165, 9620, 10326
BshTI ACCGGT 1 cut(s) 7131
BshVI ATCGAT 3 cut(s) 1087, 9175, 10633
BsiHKAI GWGCWC 9 cut(s) 1192, 2058, 4575, 5422, 6090, 6834, 7537, 9237, 9415
BsiHKCI CYCGRG 3 cut(s) 4401, 4957, 5415
BsiSI CCGG 7 cut(s) 426, 5631, 7132, 7459, 7805, 8450, 8478
BslFI GGGAC 7 cut(s) 386, 5353, 6086, 7838, 8880, 8924, 10290
BsmFI GGGAC 7 cut(s) 386, 5353, 6086, 7838, 8880, 8924, 10290
BsmI GAATGC 9 cut(s) 378, 463, 982, 4050, 5744, 5846, 6718, 8920, 10116
Bso31I GGTCTC 3 cut(s) 268, 3398, 10274
BsoBI CYCGRG 3 cut(s) 4401, 4957, 5415
Bsp119I TTCGAA 1 cut(s) 9490
Bsp120I GGGCCC 1 cut(s) 7465
Bsp1407I TGTACA 2 cut(s) 997, 8533
Bsp1720I GCTNAGC 2 cut(s) 2052, 9990
Bsp19I CCATGG 1 cut(s) 1754
BspDI ATCGAT 3 cut(s) 1087, 9175, 10633
BspFNI CGCG 4 cut(s) 5796, 6124, 8697, 10116
BspHI TCATGA 6 cut(s) 1668, 2512, 2665, 7609, 10309, 10333
BspMAI CTGCAG 3 cut(s) 9, 342, 7390
BspMI ACCTGC 4 cut(s) 625, 1218, 1497, 10339
BspOI GCTAGC 2 cut(s) 993, 9012
BspQI GCTCTTC 3 cut(s) 1297, 3082, 3879
BspT104I TTCGAA 1 cut(s) 9490
BspT107I GGYRCC 7 cut(s) 283, 3152, 6288, 6415, 7165, 9620, 10326
BspTI CTTAAG 2 cut(s) 2354, 3119
BspTNI GGTCTC 3 cut(s) 268, 3398, 10274
BsrDI GCAATG 8 cut(s) 1717, 3093, 4457, 4844, 5306, 6117, 6978, 10689
BsrFI RCCGGY 2 cut(s) 425, 7131
BsrGI TGTACA 2 cut(s) 997, 8533
BssAI RCCGGY 2 cut(s) 425, 7131
BssNI GRCGYC 4 cut(s) 2622, 6416, 10327, 10488
BssSI CACGAG 4 cut(s) 164, 2057, 8153, 9063
Bst2BI CACGAG 4 cut(s) 164, 2057, 8153, 9063
BstACI GRCGYC 4 cut(s) 2622, 6416, 10327, 10488
BstAFI CTTAAG 2 cut(s) 2354, 3119
BstAPI GCANNNNNTGC 2 cut(s) 986, 10693
BstAUI TGTACA 2 cut(s) 997, 8533
BstBAI YACGTR 4 cut(s) 3227, 3748, 8525, 9812
BstBI TTCGAA 1 cut(s) 9490
BstDSI CCRYGG 4 cut(s) 1754, 3910, 9309, 9327
BstEII GGTNACC 1 cut(s) 2342
BstENI CCTNNNNNAGG 3 cut(s) 5407, 8606, 9713
BstFNI CGCG 4 cut(s) 5796, 6124, 8697, 10116
BstH2I RGCGCY 3 cut(s) 6419, 8366, 10330
BstNSI RCATGY 7 cut(s) 530, 2607, 2824, 3682, 3870, 7919, 8989
BstPAI GACNNNNGTC 1 cut(s) 8970
BstPI GGTNACC 1 cut(s) 2342
BstSLI GKGCMC 8 cut(s) 2218, 4575, 6834, 7469, 7537, 9237, 9415, 10698
BstSNI TACGTA 1 cut(s) 3227
BstUI CGCG 4 cut(s) 5796, 6124, 8697, 10116
BstV2I GAAGAC 7 cut(s) 3763, 4896, 5859, 6860, 7677, 9697, 9729
BstXI CCANNNNNNTGG 5 cut(s) 6257, 8142, 9617, 9784, 10323
Bsu15I ATCGAT 3 cut(s) 1087, 9175, 10633
BsuI GTATCC 5 cut(s) 2593, 3928, 5627, 6890, 10113
BsuTUI ATCGAT 3 cut(s) 1087, 9175, 10633
BtgI CCRYGG 4 cut(s) 1754, 3910, 9309, 9327
BtrI CACGTC 2 cut(s) 751, 1060
BtsI GCAGTG 5 cut(s) 431, 5499, 5602, 7832, 8166
BveI ACCTGC 4 cut(s) 625, 1218, 1497, 10339
CaiI CAGNNNCTG 3 cut(s) 53, 9282, 9861
CciI TCATGA 6 cut(s) 1668, 2512, 2665, 7609, 10309, 10333
Cfr10I RCCGGY 2 cut(s) 425, 7131
ClaI ATCGAT 3 cut(s) 1087, 9175, 10633
CseI GACGC 3 cut(s) 1262, 5507, 10477
CspAI ACCGGT 1 cut(s) 7131
CspCI CAANNNNNGTGG 4 cut(s) 2842, 2877, 6478, 6513
DinI GGCGCC 2 cut(s) 6417, 10328
DraI TTTAAA 5 cut(s) 99, 877, 2376, 3027, 6891
DraIII CACNNNGTG 1 cut(s) 5261
DrdI GACNNNNNNGTC 1 cut(s) 4120
DseDI GACNNNNNNGTC 1 cut(s) 4120
EaeI YGGCCR 3 cut(s) 3319, 6694, 10478
EciI GGCGGA 5 cut(s) 2735, 6080, 6291, 7439, 8366
Ecl136II GAGCTC 1 cut(s) 6088
Eco105I TACGTA 1 cut(s) 3227
Eco147I AGGCCT 4 cut(s) 4699, 5413, 6485, 10641
Eco24I GRGCYC 3 cut(s) 5119, 6090, 7469
Eco31I GGTCTC 3 cut(s) 268, 3398, 10274
Eco32I GATATC 3 cut(s) 1243, 9117, 10002
Eco53kI GAGCTC 1 cut(s) 6088
Eco57I CTGAAG 5 cut(s) 642, 954, 3615, 5871, 7569
Eco72I CACGTG 1 cut(s) 8525
Eco88I CYCGRG 3 cut(s) 4401, 4957, 5415
Eco91I GGTNACC 1 cut(s) 2342
EcoICRI GAGCTC 1 cut(s) 6088
EcoNI CCTNNNNNAGG 3 cut(s) 5407, 8606, 9713
EcoO109I RGGNCCY 5 cut(s) 7465, 8188, 8599, 8611, 10277
EcoO65I GGTNACC 1 cut(s) 2342
EcoRI GAATTC 6 cut(s) 2182, 3538, 7397, 7995, 8456, 9603
EcoRV GATATC 3 cut(s) 1243, 9117, 10002
EcoT22I ATGCAT 8 cut(s) 3872, 5089, 5506, 6316, 6329, 7990, 8495, 9090
EcoT38I GRGCYC 3 cut(s) 5119, 6090, 7469
EgeI GGCGCC 2 cut(s) 6417, 10328
EheI GGCGCC 2 cut(s) 6417, 10328
FaqI GGGAC 7 cut(s) 386, 5353, 6086, 7838, 8880, 8924, 10290
FauI CCCGC 3 cut(s) 5567, 9381, 10109
FauNDI CATATG 6 cut(s) 4630, 5038, 5506, 7160, 8179, 10706
FbaI TGATCA 5 cut(s) 1567, 5353, 8119, 9475, 9766
FblI GTMKAC 2 cut(s) 1924, 4588
FriOI GRGCYC 3 cut(s) 5119, 6090, 7469
FspAI RTGCGCAY 1 cut(s) 1607
FspI TGCGCA 1 cut(s) 1607
GsaI CCCAGC 4 cut(s) 1949, 2338, 2996, 7472
GsuI CTGGAG 8 cut(s) 1048, 6159, 6319, 6478, 6722, 8624, 10140, 10256
HaeII RGCGCY 3 cut(s) 6419, 8366, 10330
HapII CCGG 7 cut(s) 426, 5631, 7132, 7459, 7805, 8450, 8478
HgaI GACGC 3 cut(s) 1262, 5507, 10477
Hin1I GRCGYC 4 cut(s) 2622, 6416, 10327, 10488
HindIII AAGCTT 7 cut(s) 1078, 2103, 3893, 5048, 6680, 9188, 9804
HpaI GTTAAC 1 cut(s) 6394
HpaII CCGG 7 cut(s) 426, 5631, 7132, 7459, 7805, 8450, 8478
Hpy99I CGWCG 1 cut(s) 405
Hsp92I GRCGYC 4 cut(s) 2622, 6416, 10327, 10488
KasI GGCGCC 2 cut(s) 6415, 10326
KpnI GGTACC 3 cut(s) 3156, 6292, 9624
Ksp22I TGATCA 5 cut(s) 1567, 5353, 8119, 9475, 9766
KspAI GTTAAC 1 cut(s) 6394
LguI GCTCTTC 3 cut(s) 1297, 3082, 3879
MfeI CAATTG 4 cut(s) 5526, 5857, 6758, 10124
Mly113I GGCGCC 2 cut(s) 6416, 10327
MmeI TCCRAC 9 cut(s) 991, 1119, 3809, 5046, 7774, 7866, 8409, 10162, 10175
Mph1103I ATGCAT 8 cut(s) 3872, 5089, 5506, 6316, 6329, 7990, 8495, 9090
MroXI GAANNNNTTC 6 cut(s) 133, 1080, 5049, 5989, 6266, 7874
MspA1I CMGCKG 8 cut(s) 50, 800, 2195, 3635, 4220, 6179, 8549, 10477
MspCI CTTAAG 2 cut(s) 2354, 3119
MspI CCGG 7 cut(s) 426, 5631, 7132, 7459, 7805, 8450, 8478
MunI CAATTG 4 cut(s) 5526, 5857, 6758, 10124
Mva1269I GAATGC 9 cut(s) 378, 463, 982, 4050, 5744, 5846, 6718, 8920, 10116
MvnI CGCG 4 cut(s) 5796, 6124, 8697, 10116
NarI GGCGCC 2 cut(s) 6416, 10327
NciI CCSGG 3 cut(s) 5631, 7459, 7805
NcoI CCATGG 1 cut(s) 1754
NdeI CATATG 6 cut(s) 4630, 5038, 5506, 7160, 8179, 10706
NheI GCTAGC 2 cut(s) 989, 9008
NmeAIII GCCGAG 1 cut(s) 8339
NsbI TGCGCA 1 cut(s) 1607
NsiI ATGCAT 8 cut(s) 3872, 5089, 5506, 6316, 6329, 7990, 8495, 9090
NspI RCATGY 7 cut(s) 530, 2607, 2824, 3682, 3870, 7919, 8989
NspV TTCGAA 1 cut(s) 9490
OliI CACNNNNGTG 1 cut(s) 5198
PaeI GCATGC 2 cut(s) 3870, 7919
PaeR7I CTCGAG 2 cut(s) 4401, 5415
PagI TCATGA 6 cut(s) 1668, 2512, 2665, 7609, 10309, 10333
PaqCI CACCTGC 2 cut(s) 625, 1497
PceI AGGCCT 4 cut(s) 4699, 5413, 6485, 10641
PciI ACATGT 1 cut(s) 2603
PciSI GCTCTTC 3 cut(s) 1297, 3082, 3879
PctI GAATGC 9 cut(s) 378, 463, 982, 4050, 5744, 5846, 6718, 8920, 10116
PdmI GAANNNNTTC 6 cut(s) 133, 1080, 5049, 5989, 6266, 7874
PflFI GACNNNGTC 1 cut(s) 8648
PflMI CCANNNNNTGG 2 cut(s) 1631, 5336
PfoI TCCNGGA 2 cut(s) 6335, 8601
PinAI ACCGGT 1 cut(s) 7131
PluTI GGCGCC 2 cut(s) 6419, 10330
PmaCI CACGTG 1 cut(s) 8525
PmlI CACGTG 1 cut(s) 8525
Ppu21I YACGTR 4 cut(s) 3227, 3748, 8525, 9812
PpuMI RGGWCCY 4 cut(s) 8188, 8599, 8611, 10277
PscI ACATGT 1 cut(s) 2603
PshAI GACNNNNGTC 1 cut(s) 8970
PshBI ATTAAT 2 cut(s) 2208, 9261
PsiI TTATAA 3 cut(s) 1400, 4715, 9824
Psp124BI GAGCTC 1 cut(s) 6090
Psp5II RGGWCCY 4 cut(s) 8188, 8599, 8611, 10277
PspCI CACGTG 1 cut(s) 8525
PspEI GGTNACC 1 cut(s) 2342
PspFI CCCAGC 4 cut(s) 1945, 2334, 2992, 7468
PspOMI GGGCCC 1 cut(s) 7465
PspPPI RGGWCCY 4 cut(s) 8188, 8599, 8611, 10277
PspXI VCTCGAGB 2 cut(s) 4401, 5415
PsrI GAACNNNNNNTAC 4 cut(s) 1923, 1955, 3910, 3942
PstI CTGCAG 3 cut(s) 9, 342, 7390
PstNI CAGNNNCTG 3 cut(s) 53, 9282, 9861
PsyI GACNNNGTC 1 cut(s) 8648
PvuII CAGCTG 5 cut(s) 50, 800, 2195, 3635, 6179
SacI GAGCTC 1 cut(s) 6090
SalI GTCGAC 1 cut(s) 1923
SapI GCTCTTC 3 cut(s) 1297, 3082, 3879
ScaI AGTACT 2 cut(s) 6720, 8949
SfoI GGCGCC 2 cut(s) 6417, 10328
Sfr274I CTCGAG 2 cut(s) 4401, 5415
SfuI TTCGAA 1 cut(s) 9490
SlaI CTCGAG 2 cut(s) 4401, 5415
SmiI ATTTAAAT 1 cut(s) 6891
SnaBI TACGTA 1 cut(s) 3227
SpeI ACTAGT 2 cut(s) 8312, 8969
SphI GCATGC 2 cut(s) 3870, 7919
SseBI AGGCCT 4 cut(s) 4699, 5413, 6485, 10641
SspDI GGCGCC 2 cut(s) 6415, 10326
SspI AATATT 5 cut(s) 206, 4921, 6406, 6801, 7923
SstI GAGCTC 1 cut(s) 6090
StuI AGGCCT 4 cut(s) 4699, 5413, 6485, 10641
SwaI ATTTAAAT 1 cut(s) 6891
TaqII GACCGA 4 cut(s) 3422, 7818, 10033, 10256
TatI WGTACW 9 cut(s) 997, 1558, 4782, 6718, 8072, 8309, 8533, 8947, 9896
TauI GCSGC 3 cut(s) 6115, 7171, 10480
Tth111I GACNNNGTC 1 cut(s) 8648
Van91I CCANNNNNTGG 2 cut(s) 1631, 5336
Vha464I CTTAAG 2 cut(s) 2354, 3119
VneI GTGCAC 5 cut(s) 4571, 6830, 7533, 9233, 9411
VspI ATTAAT 2 cut(s) 2208, 9261
XagI CCTNNNNNAGG 3 cut(s) 5407, 8606, 9713
XbaI TCTAGA 4 cut(s) 4885, 6622, 7750, 8219
XceI RCATGY 7 cut(s) 530, 2607, 2824, 3682, 3870, 7919, 8989
XcmI CCANNNNNNNNNTGG 1 cut(s) 6105
XhoI CTCGAG 2 cut(s) 4401, 5415
XmaJI CCTAGG 2 cut(s) 3157, 6377
XmiI GTMKAC 2 cut(s) 1924, 4588
XmnI GAANNNNTTC 6 cut(s) 133, 1080, 5049, 5989, 6266, 7874
ZraI GACGTC 1 cut(s) 2623
ZrmI AGTACT 2 cut(s) 6720, 8949
Zsp2I ATGCAT 8 cut(s) 3872, 5089, 5506, 6316, 6329, 7990, 8495, 9090
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.