pycom13g14160

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0009678
Physical Location & Seq
Reverse (-)
10138961 .. 10139293
333 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 231 bp
ATGGTGACTAATTACTTTGAGACCATATTTCGATCTTGTGCACTACCGAACGATAATTCCGATTTGGTTGAGGATATCAAATGCAAAGTTCTTGATGCTATGAATCTGTCTCTTATCTCTCAAGTTACCACGGAGGAAGTCCGAGCTGCACTTTTCCAAATGCACCCATCTAAGTCCCCGGGACCGAACAGAATGCCTCCGATATTCTTCCAACGACCGAAACAGTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

77

Amino Acids

8.64

Weight (kDa)

6.54

Isoelectric Point (pI)

62.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AloI GAACNNNNNNTCC 2 cut(s) 41, 73
AluBI AGCT 1 cut(s) 146
AluI AGCT 1 cut(s) 146
Alw21I GWGCWC 1 cut(s) 43
Alw26I GTCTC 2 cut(s) 14, 114
Alw44I GTGCAC 1 cut(s) 39
Ama87I CYCGRG 1 cut(s) 178
ApaLI GTGCAC 1 cut(s) 39
ApeKI GCWGC 1 cut(s) 146
AspS9I GGNCC 1 cut(s) 182
AsuC2I CCSGG 2 cut(s) 179, 180
AsuHPI GGTGA 1 cut(s) 16
AvaI CYCGRG 1 cut(s) 178
AvaII GGWCC 1 cut(s) 182
BaeGI GKGCMC 1 cut(s) 43
Bbv12I GWGCWC 1 cut(s) 43
BbvI GCAGC 1 cut(s) 133
BccI CCATC 1 cut(s) 175
BcgI CGANNNNNNTGC 2 cut(s) 175, 209
BcnI CCSGG 2 cut(s) 179, 180
BcoDI GTCTC 2 cut(s) 14, 114
BisI GCNGC 1 cut(s) 147
BlsI GCNGC 1 cut(s) 148
Bme1390I CCNGG 2 cut(s) 179, 180
Bme18I GGWCC 1 cut(s) 182
BmeT110I CYCGRG 1 cut(s) 178
BmgT120I GGNCC 1 cut(s) 182
BmiI GGNNCC 1 cut(s) 183
BmrFI CCNGG 2 cut(s) 179, 180
BmsI GCATC 1 cut(s) 85
BpuEI CTTGAG 1 cut(s) 105
BpuMI CCSGG 2 cut(s) 179, 180
BsaI GGTCTC 1 cut(s) 14
BsaJI CCNNGG 3 cut(s) 129, 177, 178
BseDI CCNNGG 3 cut(s) 129, 177, 178
BseSI GKGCMC 1 cut(s) 43
BseXI GCAGC 1 cut(s) 133
BsgI GTGCAG 1 cut(s) 132
Bsh1285I CGRYCG 1 cut(s) 218
BsiEI CGRYCG 1 cut(s) 218
BsiHKAI GWGCWC 1 cut(s) 43
BsiHKCI CYCGRG 1 cut(s) 178
BsiSI CCGG 1 cut(s) 179
BslFI GGGAC 2 cut(s) 160, 195
BsmAI GTCTC 2 cut(s) 14, 114
BsmFI GGGAC 2 cut(s) 160, 195
BsmI GAATGC 1 cut(s) 198
Bso31I GGTCTC 1 cut(s) 14
BsoBI CYCGRG 1 cut(s) 178
Bsp1286I GDGCHC 1 cut(s) 43
Bsp143I GATC 1 cut(s) 32
BspLI GGNNCC 1 cut(s) 183
BspTNI GGTCTC 1 cut(s) 14
BssECI CCNNGG 3 cut(s) 129, 177, 178
BssMI GATC 1 cut(s) 32
Bst4CI ACNGT 1 cut(s) 225
BstDEI CTNAG 1 cut(s) 171
BstDSI CCRYGG 1 cut(s) 129
BstKTI GATC 1 cut(s) 35
BstMAI GTCTC 2 cut(s) 14, 114
BstMBI GATC 1 cut(s) 32
BstMCI CGRYCG 1 cut(s) 218
BstSCI CCNGG 2 cut(s) 177, 178
BstSLI GKGCMC 1 cut(s) 43
BstV1I GCAGC 1 cut(s) 133
BtgI CCRYGG 1 cut(s) 129
Cfr13I GGNCC 1 cut(s) 182
Cfr9I CCCGGG 1 cut(s) 178
CviJI RGCY 1 cut(s) 146
CviKI_1 RGCY 1 cut(s) 146
DdeI CTNAG 1 cut(s) 171
DpnI GATC 1 cut(s) 34
DpnII GATC 1 cut(s) 32
Eco31I GGTCTC 1 cut(s) 14
Eco32I GATATC 1 cut(s) 76
Eco47I GGWCC 1 cut(s) 182
Eco88I CYCGRG 1 cut(s) 178
EcoRV GATATC 1 cut(s) 76
FaiI YATR 2 cut(s) 26, 101
FaqI GGGAC 2 cut(s) 160, 195
Fnu4HI GCNGC 1 cut(s) 147
Fsp4HI GCNGC 1 cut(s) 147
GluI GCNGC 1 cut(s) 147
HapII CCGG 1 cut(s) 179
HinfI GANTC 1 cut(s) 103
HpaII CCGG 1 cut(s) 179
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 41
Hpy188I TCNGA 3 cut(s) 61, 143, 201
Hpy188III TCNNGA 2 cut(s) 92, 228
Hpy8I GTNNAC 1 cut(s) 41
HpyCH4III ACNGT 1 cut(s) 225
HpyCH4V TGCA 4 cut(s) 41, 84, 149, 163
HpyF3I CTNAG 1 cut(s) 171
Kzo9I GATC 1 cut(s) 32
LpnPI CCDG 1 cut(s) 192
Lsp1109I GCAGC 1 cut(s) 133
LweI GCATC 1 cut(s) 85
MaeIII GTNAC 2 cut(s) 4, 124
MalI GATC 1 cut(s) 34
MboI GATC 1 cut(s) 32
MboII GAAGA 1 cut(s) 199
MhlI GDGCHC 1 cut(s) 43
MluCI AATT 2 cut(s) 10, 55
MnlI CCTC 3 cut(s) 64, 127, 207
MspI CCGG 1 cut(s) 179
MspR9I CCNGG 2 cut(s) 179, 180
Mva1269I GAATGC 1 cut(s) 198
NciI CCSGG 2 cut(s) 179, 180
NdeII GATC 1 cut(s) 32
NlaIV GGNNCC 1 cut(s) 183
NmuCI GTSAC 1 cut(s) 4
PcsI WCGNNNNNNNCGW 1 cut(s) 57
PctI GAATGC 1 cut(s) 198
PfeI GAWTC 1 cut(s) 103
PkrI GCNGC 1 cut(s) 148
PspN4I GGNNCC 1 cut(s) 183
PspPI GGNCC 1 cut(s) 182
SatI GCNGC 1 cut(s) 147
Sau3AI GATC 1 cut(s) 32
Sau96I GGNCC 1 cut(s) 182
ScrFI CCNGG 2 cut(s) 179, 180
SduI GDGCHC 1 cut(s) 43
SetI ASST 1 cut(s) 148
SfaNI GCATC 1 cut(s) 85
SgeI CNNG 8 cut(s) 48, 104, 134, 142, 155, 190, 191, 192
SinI GGWCC 1 cut(s) 182
SmaI CCCGGG 1 cut(s) 180
SmlI CTYRAG 1 cut(s) 120
SmoI CTYRAG 1 cut(s) 120
Sse9I AATT 2 cut(s) 10, 55
StyD4I CCNGG 2 cut(s) 177, 178
TaaI ACNGT 1 cut(s) 225
TaqI TCGA 1 cut(s) 31
TaqII GACCGA 1 cut(s) 199
TasI AATT 2 cut(s) 10, 55
TfiI GAWTC 1 cut(s) 103
TseFI GTSAC 1 cut(s) 4
TseI GCWGC 1 cut(s) 146
Tsp45I GTSAC 1 cut(s) 4
TspDTI ATGAA 1 cut(s) 116
TspGWI ACGGA 1 cut(s) 146
TspMI CCCGGG 1 cut(s) 178
VneI GTGCAC 1 cut(s) 39
VpaK11BI GGWCC 1 cut(s) 182
XmaI CCCGGG 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.