Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009678

Physical Location & Seq

Genomic Coordinates Forward (+)

28041108 .. 28041443

Gene Structure 336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44682

Sequence Viewer

CDS Protein Promoter (2k)

Length: 177 bp

ATGTTCTCTACTGAGGGTACAAATGAGACTGCAATGAGCATCATTTTGCAGACAGTCCAACGAAAGGTGACTCCTGAGATGAATAATGACTTGTTAGCTCCGTACACGGATGATGAGATCCGAGCTGCTGCGTTTCAAATGCATCCGTCAAAAGCCCCAGGTCCAGATGGCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

58

Amino Acids

6.37

Weight (kDa)

4.5

Isoelectric Point (pI)

45.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009678)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g10222
pyrus_communis	pycom05g03820 pycom13g14160
rosa_chinensis	RchiOBHm_Chr3g0481911 RchiOBHm_Chr7g0230761
rosa_multiflora	Rmu_co8504529.1_g000002 Rmu_sc0001350.1_g000011 Rmu_sc0001847.1_g000004 Rmu_sc0006323.1_g000012 Rmu_sc0007994.1_g000004 Rmu_sc0010800.1_g000001 Rmu_sc0013801.1_g000003 Rmu_sc0018646.1_g000004 Rmu_sc0024195.1_g000003 Rmu_sc0037386.1_g000001 Rmu_sc0040395.1_g000001
rosa_roxburghii	Rroxscaffold_3G00233950 Rroxscaffold_3G00238590 Rroxscaffold_5G00334460 Rroxscaffold_7G00177700 Rroxscaffold_7G00178180
rosa_rugosa	Rorug07G0126600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	112
AfaI	GTAC	2 cut(s)	19, 104
AfiI	CCNNNNNNNGG	1 cut(s)	64
AgsI	TTSAA	1 cut(s)	137
AjnI	CCWGG	1 cut(s)	157
AluBI	AGCT	2 cut(s)	98, 125
AluI	AGCT	2 cut(s)	98, 125
Alw26I	GTCTC	1 cut(s)	20
AlwI	GGATC	1 cut(s)	112
ApeKI	GCWGC	2 cut(s)	125, 128
AspS9I	GGNCC	1 cut(s)	161
AsuHPI	GGTGA	1 cut(s)	79
AvaII	GGWCC	1 cut(s)	161
BbvI	GCAGC	2 cut(s)	112, 115
BccI	CCATC	1 cut(s)	161
BciT130I	CCWGG	1 cut(s)	159
BcoDI	GTCTC	1 cut(s)	20
BisI	GCNGC	2 cut(s)	126, 129
BlsI	GCNGC	2 cut(s)	127, 130
Bme1390I	CCNGG	1 cut(s)	159
Bme18I	GGWCC	1 cut(s)	161
BmgT120I	GGNCC	1 cut(s)	161
BmrFI	CCNGG	1 cut(s)	159
BmsI	GCATC	2 cut(s)	48, 151
BsaJI	CCNNGG	1 cut(s)	157
Bsc4I	CCNNNNNNNGG	1 cut(s)	64
Bse3DI	GCAATG	1 cut(s)	39
BseBI	CCWGG	1 cut(s)	159
BseDI	CCNNGG	1 cut(s)	157
BseGI	GGATG	2 cut(s)	115, 142
BseLI	CCNNNNNNNGG	1 cut(s)	64
BseMI	GCAATG	1 cut(s)	39
BseMII	CTCAG	1 cut(s)	66
BseXI	GCAGC	2 cut(s)	112, 115
BslI	CCNNNNNNNGG	1 cut(s)	64
BsmAI	GTCTC	1 cut(s)	20
Bsp143I	GATC	1 cut(s)	117
BspCNI	CTCAG	2 cut(s)	4, 67
BspPI	GGATC	1 cut(s)	112
BsrDI	GCAATG	1 cut(s)	39
BssECI	CCNNGG	1 cut(s)	157
BssMI	GATC	1 cut(s)	117
Bst2UI	CCWGG	1 cut(s)	159
Bst4CI	ACNGT	1 cut(s)	55
BstDEI	CTNAG	2 cut(s)	12, 75
BstF5I	GGATG	2 cut(s)	115, 142
BstKTI	GATC	1 cut(s)	120
BstMAI	GTCTC	1 cut(s)	20
BstMBI	GATC	1 cut(s)	117
BstNI	CCWGG	1 cut(s)	159
BstNSI	RCATGY	1 cut(s)	175
BstSCI	CCNGG	1 cut(s)	157
BstV1I	GCAGC	2 cut(s)	112, 115
BstX2I	RGATCY	1 cut(s)	117
BstYI	RGATCY	1 cut(s)	117
BtsCI	GGATG	2 cut(s)	115, 142
Cfr13I	GGNCC	1 cut(s)	161
Csp6I	GTAC	2 cut(s)	18, 103
CviAII	CATG	1 cut(s)	172
CviJI	RGCY	3 cut(s)	98, 125, 155
CviKI_1	RGCY	3 cut(s)	98, 125, 155
CviQI	GTAC	2 cut(s)	18, 103
DdeI	CTNAG	2 cut(s)	12, 75
DpnI	GATC	1 cut(s)	119
DpnII	GATC	1 cut(s)	117
Eco47I	GGWCC	1 cut(s)	161
EcoRII	CCWGG	1 cut(s)	157
EcoT22I	ATGCAT	1 cut(s)	144
FaeI	CATG	1 cut(s)	175
FaiI	YATR	1 cut(s)	173
FatI	CATG	1 cut(s)	171
Fnu4HI	GCNGC	2 cut(s)	126, 129
FokI	GGATG	2 cut(s)	122, 129
Fsp4HI	GCNGC	2 cut(s)	126, 129
GluI	GCNGC	2 cut(s)	126, 129
Hin1II	CATG	1 cut(s)	175
HinfI	GANTC	1 cut(s)	70
HphI	GGTGA	1 cut(s)	79
Hpy166II	GTNNAC	1 cut(s)	105
Hpy188I	TCNGA	1 cut(s)	122
Hpy188III	TCNNGA	2 cut(s)	74, 164
Hpy8I	GTNNAC	1 cut(s)	105
HpyCH4III	ACNGT	1 cut(s)	55
HpyCH4V	TGCA	3 cut(s)	32, 49, 142
HpyF3I	CTNAG	2 cut(s)	12, 75
Hsp92II	CATG	1 cut(s)	175
Kzo9I	GATC	1 cut(s)	117
LmnI	GCTCC	1 cut(s)	103
LpnPI	CCDG	3 cut(s)	87, 144, 171
Lsp1109I	GCAGC	2 cut(s)	112, 115
LweI	GCATC	2 cut(s)	48, 151
MaeIII	GTNAC	1 cut(s)	67
MalI	GATC	1 cut(s)	119
MboI	GATC	1 cut(s)	117
MflI	RGATCY	1 cut(s)	117
MlyI	GAGTC	1 cut(s)	64
MmeI	TCCRAC	1 cut(s)	82
MnlI	CCTC	1 cut(s)	7
Mph1103I	ATGCAT	1 cut(s)	144
MspR9I	CCNGG	1 cut(s)	159
MvaI	CCWGG	1 cut(s)	159
NdeII	GATC	1 cut(s)	117
NlaIII	CATG	1 cut(s)	175
NmuCI	GTSAC	1 cut(s)	67
NsiI	ATGCAT	1 cut(s)	144
NspI	RCATGY	1 cut(s)	175
PkrI	GCNGC	2 cut(s)	127, 130
PleI	GAGTC	1 cut(s)	64
PpsI	GAGTC	1 cut(s)	64
Psp6I	CCWGG	1 cut(s)	157
PspGI	CCWGG	1 cut(s)	157
PspPI	GGNCC	1 cut(s)	161
PsuI	RGATCY	1 cut(s)	117
RsaI	GTAC	2 cut(s)	19, 104
RsaNI	GTAC	2 cut(s)	18, 103
SatI	GCNGC	2 cut(s)	126, 129
Sau3AI	GATC	1 cut(s)	117
Sau96I	GGNCC	1 cut(s)	161
SchI	GAGTC	1 cut(s)	64
ScrFI	CCNGG	1 cut(s)	159
SetI	ASST	4 cut(s)	69, 100, 127, 163
SfaNI	GCATC	2 cut(s)	48, 151
SgeI	CNNG	6 cut(s)	86, 103, 118, 134, 170, 171
SinI	GGWCC	1 cut(s)	161
StyD4I	CCNGG	1 cut(s)	157
TaaI	ACNGT	1 cut(s)	55
TseFI	GTSAC	1 cut(s)	67
TseI	GCWGC	2 cut(s)	125, 128
Tsp45I	GTSAC	1 cut(s)	67
TspDTI	ATGAA	1 cut(s)	95
TspGWI	ACGGA	3 cut(s)	90, 122, 135
VpaK11BI	GGWCC	1 cut(s)	161
XceI	RCATGY	1 cut(s)	175
Zsp2I	ATGCAT	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.