Ribonuclease H protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g10222 |
| pyrus_communis | pycom05g03820 pycom13g14160 |
| rosa_chinensis | RchiOBHm_Chr3g0481911 RchiOBHm_Chr7g0230761 |
| rosa_multiflora | Rmu_co8504529.1_g000002 Rmu_sc0001350.1_g000011 Rmu_sc0001847.1_g000004 Rmu_sc0006323.1_g000012 Rmu_sc0007994.1_g000004 Rmu_sc0010800.1_g000001 Rmu_sc0013801.1_g000003 Rmu_sc0018646.1_g000004 Rmu_sc0024195.1_g000003 Rmu_sc0037386.1_g000001 Rmu_sc0040395.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00233950 Rroxscaffold_3G00238590 Rroxscaffold_5G00334460 Rroxscaffold_7G00177700 Rroxscaffold_7G00178180 |
| rosa_rugosa | Rorug07G0126600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 20 |
| AcuI | CTGAAG | 1 cut(s) | 279 |
| AjnI | CCWGG | 1 cut(s) | 157 |
| AluBI | AGCT | 4 cut(s) | 32, 53, 128, 319 |
| AluI | AGCT | 4 cut(s) | 32, 53, 128, 319 |
| AoxI | GGCC | 1 cut(s) | 333 |
| ApeKI | GCWGC | 1 cut(s) | 17 |
| AspS9I | GGNCC | 1 cut(s) | 161 |
| AvaII | GGWCC | 1 cut(s) | 161 |
| BbvI | GCAGC | 1 cut(s) | 4 |
| BccI | CCATC | 2 cut(s) | 154, 161 |
| BciT130I | CCWGG | 1 cut(s) | 159 |
| BisI | GCNGC | 1 cut(s) | 18 |
| BlsI | GCNGC | 1 cut(s) | 19 |
| Bme1390I | CCNGG | 1 cut(s) | 159 |
| Bme18I | GGWCC | 1 cut(s) | 161 |
| BmgT120I | GGNCC | 1 cut(s) | 161 |
| BmrFI | CCNGG | 1 cut(s) | 159 |
| BpuEI | CTTGAG | 2 cut(s) | 276, 299 |
| BseBI | CCWGG | 1 cut(s) | 159 |
| BseGI | GGATG | 1 cut(s) | 28 |
| BseMII | CTCAG | 1 cut(s) | 298 |
| BseXI | GCAGC | 1 cut(s) | 4 |
| BshFI | GGCC | 1 cut(s) | 335 |
| BslFI | GGGAC | 1 cut(s) | 160 |
| BsmFI | GGGAC | 1 cut(s) | 160 |
| BsnI | GGCC | 1 cut(s) | 335 |
| Bsp143I | GATC | 2 cut(s) | 88, 117 |
| BspACI | CCGC | 1 cut(s) | 20 |
| BspANI | GGCC | 1 cut(s) | 335 |
| BspCNI | CTCAG | 1 cut(s) | 297 |
| BssMI | GATC | 2 cut(s) | 88, 117 |
| Bst2UI | CCWGG | 1 cut(s) | 159 |
| Bst6I | CTCTTC | 2 cut(s) | 108, 291 |
| BstDEI | CTNAG | 1 cut(s) | 284 |
| BstF5I | GGATG | 1 cut(s) | 28 |
| BstKTI | GATC | 2 cut(s) | 91, 120 |
| BstMBI | GATC | 2 cut(s) | 88, 117 |
| BstNI | CCWGG | 1 cut(s) | 159 |
| BstSCI | CCNGG | 1 cut(s) | 157 |
| BstV1I | GCAGC | 1 cut(s) | 4 |
| BsuRI | GGCC | 1 cut(s) | 335 |
| BtsCI | GGATG | 1 cut(s) | 28 |
| BtsI | GCAGTG | 1 cut(s) | 12 |
| BtsIMutI | CAGTG | 1 cut(s) | 12 |
| Cfr13I | GGNCC | 1 cut(s) | 161 |
| CviAII | CATG | 2 cut(s) | 79, 274 |
| CviJI | RGCY | 5 cut(s) | 32, 53, 128, 319, 335 |
| CviKI_1 | RGCY | 5 cut(s) | 32, 53, 128, 319, 335 |
| DdeI | CTNAG | 1 cut(s) | 284 |
| DpnI | GATC | 2 cut(s) | 90, 119 |
| DpnII | GATC | 2 cut(s) | 88, 117 |
| Eam1104I | CTCTTC | 2 cut(s) | 108, 291 |
| EarI | CTCTTC | 2 cut(s) | 108, 291 |
| Eco147I | AGGCCT | 1 cut(s) | 335 |
| Eco32I | GATATC | 1 cut(s) | 325 |
| Eco47I | GGWCC | 1 cut(s) | 161 |
| Eco57I | CTGAAG | 1 cut(s) | 279 |
| EcoRII | CCWGG | 1 cut(s) | 157 |
| EcoRV | GATATC | 1 cut(s) | 325 |
| FaeI | CATG | 2 cut(s) | 82, 277 |
| FaiI | YATR | 9 cut(s) | 80, 138, 140, 173, 204, 216, 227, 275, 339 |
| FaqI | GGGAC | 1 cut(s) | 160 |
| FatI | CATG | 2 cut(s) | 78, 273 |
| FauNDI | CATATG | 1 cut(s) | 138 |
| Fnu4HI | GCNGC | 1 cut(s) | 18 |
| FokI | GGATG | 1 cut(s) | 35 |
| Fsp4HI | GCNGC | 1 cut(s) | 18 |
| GluI | GCNGC | 1 cut(s) | 18 |
| HaeIII | GGCC | 1 cut(s) | 335 |
| Hin1II | CATG | 2 cut(s) | 82, 277 |
| HindIII | AAGCTT | 1 cut(s) | 317 |
| HinfI | GANTC | 1 cut(s) | 289 |
| Hpy188I | TCNGA | 2 cut(s) | 50, 238 |
| Hpy188III | TCNNGA | 3 cut(s) | 221, 286, 293 |
| HpyCH4V | TGCA | 1 cut(s) | 277 |
| HpyF3I | CTNAG | 1 cut(s) | 284 |
| Hsp92II | CATG | 2 cut(s) | 82, 277 |
| Kzo9I | GATC | 2 cut(s) | 88, 117 |
| LpnPI | CCDG | 5 cut(s) | 144, 171, 177, 234, 271 |
| Lsp1109I | GCAGC | 1 cut(s) | 4 |
| MaeIII | GTNAC | 1 cut(s) | 67 |
| MalI | GATC | 2 cut(s) | 90, 119 |
| MboI | GATC | 2 cut(s) | 88, 117 |
| MboII | GAAGA | 2 cut(s) | 125, 308 |
| MlyI | GAGTC | 1 cut(s) | 283 |
| MnlI | CCTC | 1 cut(s) | 153 |
| MseI | TTAA | 1 cut(s) | 93 |
| MslI | CAYNNNNRTG | 1 cut(s) | 207 |
| MspR9I | CCNGG | 1 cut(s) | 159 |
| MvaI | CCWGG | 1 cut(s) | 159 |
| NdeI | CATATG | 1 cut(s) | 138 |
| NdeII | GATC | 2 cut(s) | 88, 117 |
| NlaIII | CATG | 2 cut(s) | 82, 277 |
| PceI | AGGCCT | 1 cut(s) | 335 |
| PfoI | TCCNGGA | 1 cut(s) | 157 |
| PkrI | GCNGC | 1 cut(s) | 19 |
| PleI | GAGTC | 1 cut(s) | 283 |
| PpsI | GAGTC | 1 cut(s) | 283 |
| Psp6I | CCWGG | 1 cut(s) | 157 |
| PspGI | CCWGG | 1 cut(s) | 157 |
| PspPI | GGNCC | 1 cut(s) | 161 |
| RseI | CAYNNNNRTG | 1 cut(s) | 207 |
| SaqAI | TTAA | 1 cut(s) | 93 |
| SatI | GCNGC | 1 cut(s) | 18 |
| Sau3AI | GATC | 2 cut(s) | 88, 117 |
| Sau96I | GGNCC | 1 cut(s) | 161 |
| SchI | GAGTC | 1 cut(s) | 283 |
| ScrFI | CCNGG | 1 cut(s) | 159 |
| SetI | ASST | 4 cut(s) | 34, 55, 130, 321 |
| SinI | GGWCC | 1 cut(s) | 161 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 207 |
| SmlI | CTYRAG | 2 cut(s) | 291, 314 |
| SmoI | CTYRAG | 2 cut(s) | 291, 314 |
| SseBI | AGGCCT | 1 cut(s) | 335 |
| SsiI | CCGC | 1 cut(s) | 20 |
| SspI | AATATT | 1 cut(s) | 197 |
| StuI | AGGCCT | 1 cut(s) | 335 |
| StyD4I | CCNGG | 1 cut(s) | 157 |
| Tru1I | TTAA | 1 cut(s) | 93 |
| Tru9I | TTAA | 1 cut(s) | 93 |
| TscAI | CASTG | 1 cut(s) | 19 |
| TseI | GCWGC | 1 cut(s) | 17 |
| TspDTI | ATGAA | 5 cut(s) | 42, 95, 125, 126, 262 |
| TspRI | CASTG | 1 cut(s) | 19 |
| VpaK11BI | GGWCC | 1 cut(s) | 161 |