Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g10222 |
| pyrus_communis | pycom05g03820 pycom13g14160 |
| rosa_chinensis | RchiOBHm_Chr3g0481911 RchiOBHm_Chr7g0230761 |
| rosa_multiflora | Rmu_co8504529.1_g000002 Rmu_sc0001350.1_g000011 Rmu_sc0001847.1_g000004 Rmu_sc0006323.1_g000012 Rmu_sc0007994.1_g000004 Rmu_sc0010800.1_g000001 Rmu_sc0013801.1_g000003 Rmu_sc0018646.1_g000004 Rmu_sc0024195.1_g000003 Rmu_sc0037386.1_g000001 Rmu_sc0040395.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00233950 Rroxscaffold_3G00238590 Rroxscaffold_5G00334460 Rroxscaffold_7G00177700 Rroxscaffold_7G00178180 |
| rosa_rugosa | Rorug07G0126600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 150 |
| AcoI | YGGCCR | 1 cut(s) | 250 |
| AcuI | CTGAAG | 2 cut(s) | 51, 60 |
| AfaI | GTAC | 1 cut(s) | 104 |
| AgsI | TTSAA | 1 cut(s) | 68 |
| AlwI | GGATC | 1 cut(s) | 150 |
| AoxI | GGCC | 1 cut(s) | 250 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 8, 20 |
| AspLEI | GCGC | 1 cut(s) | 38 |
| AsuHPI | GGTGA | 1 cut(s) | 253 |
| BccI | CCATC | 1 cut(s) | 161 |
| BfoI | RGCGCY | 1 cut(s) | 39 |
| Bse3DI | GCAATG | 1 cut(s) | 225 |
| BseMI | GCAATG | 1 cut(s) | 225 |
| BshFI | GGCC | 1 cut(s) | 252 |
| BsiSI | CCGG | 1 cut(s) | 253 |
| BsnI | GGCC | 1 cut(s) | 252 |
| Bsp143I | GATC | 1 cut(s) | 142 |
| BspANI | GGCC | 1 cut(s) | 252 |
| BspPI | GGATC | 1 cut(s) | 150 |
| BsrDI | GCAATG | 1 cut(s) | 225 |
| BssMI | GATC | 1 cut(s) | 142 |
| BstH2I | RGCGCY | 1 cut(s) | 39 |
| BstHHI | GCGC | 1 cut(s) | 38 |
| BstKTI | GATC | 1 cut(s) | 145 |
| BstMBI | GATC | 1 cut(s) | 142 |
| BstX2I | RGATCY | 1 cut(s) | 142 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 198 |
| BstYI | RGATCY | 1 cut(s) | 142 |
| BsuRI | GGCC | 1 cut(s) | 252 |
| BtsI | GCAGTG | 1 cut(s) | 237 |
| BtsIMutI | CAGTG | 1 cut(s) | 237 |
| CfoI | GCGC | 1 cut(s) | 38 |
| Csp6I | GTAC | 1 cut(s) | 103 |
| CviJI | RGCY | 3 cut(s) | 128, 156, 252 |
| CviKI_1 | RGCY | 3 cut(s) | 128, 156, 252 |
| CviQI | GTAC | 1 cut(s) | 103 |
| DpnI | GATC | 1 cut(s) | 144 |
| DpnII | GATC | 1 cut(s) | 142 |
| EaeI | YGGCCR | 1 cut(s) | 250 |
| Eco57I | CTGAAG | 2 cut(s) | 51, 60 |
| FaiI | YATR | 2 cut(s) | 119, 173 |
| GlaI | GCGC | 1 cut(s) | 37 |
| HaeII | RGCGCY | 1 cut(s) | 39 |
| HaeIII | GGCC | 1 cut(s) | 252 |
| HapII | CCGG | 1 cut(s) | 253 |
| HhaI | GCGC | 1 cut(s) | 38 |
| Hin6I | GCGC | 1 cut(s) | 36 |
| HinP1I | GCGC | 1 cut(s) | 36 |
| HinfI | GANTC | 2 cut(s) | 47, 211 |
| HpaII | CCGG | 1 cut(s) | 253 |
| HphI | GGTGA | 1 cut(s) | 253 |
| Hpy166II | GTNNAC | 1 cut(s) | 105 |
| Hpy188III | TCNNGA | 2 cut(s) | 13, 215 |
| Hpy8I | GTNNAC | 1 cut(s) | 105 |
| HpyAV | CCTTC | 1 cut(s) | 26 |
| HpyCH4V | TGCA | 3 cut(s) | 73, 225, 230 |
| HspAI | GCGC | 1 cut(s) | 36 |
| Kzo9I | GATC | 1 cut(s) | 142 |
| LpnPI | CCDG | 1 cut(s) | 26 |
| MalI | GATC | 1 cut(s) | 144 |
| MboI | GATC | 1 cut(s) | 142 |
| MboII | GAAGA | 3 cut(s) | 13, 125, 178 |
| MflI | RGATCY | 1 cut(s) | 142 |
| MluCI | AATT | 2 cut(s) | 4, 256 |
| MlyI | GAGTC | 1 cut(s) | 220 |
| MnlI | CCTC | 2 cut(s) | 79, 187 |
| MroXI | GAANNNNTTC | 2 cut(s) | 8, 20 |
| MseI | TTAA | 1 cut(s) | 26 |
| MslI | CAYNNNNRTG | 2 cut(s) | 68, 230 |
| MspI | CCGG | 1 cut(s) | 253 |
| NdeII | GATC | 1 cut(s) | 142 |
| PdmI | GAANNNNTTC | 2 cut(s) | 8, 20 |
| PfeI | GAWTC | 1 cut(s) | 47 |
| PleI | GAGTC | 1 cut(s) | 219 |
| PpsI | GAGTC | 1 cut(s) | 219 |
| PsuI | RGATCY | 1 cut(s) | 142 |
| RsaI | GTAC | 1 cut(s) | 104 |
| RsaNI | GTAC | 1 cut(s) | 103 |
| RseI | CAYNNNNRTG | 2 cut(s) | 68, 230 |
| SaqAI | TTAA | 1 cut(s) | 26 |
| Sau3AI | GATC | 1 cut(s) | 142 |
| SchI | GAGTC | 1 cut(s) | 220 |
| SetI | ASST | 1 cut(s) | 243 |
| SgeI | CNNG | 3 cut(s) | 25, 170, 227 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 68, 230 |
| Sse9I | AATT | 2 cut(s) | 4, 256 |
| SspI | AATATT | 1 cut(s) | 197 |
| TasI | AATT | 2 cut(s) | 4, 256 |
| TatI | WGTACW | 1 cut(s) | 102 |
| TfiI | GAWTC | 1 cut(s) | 47 |
| Tru1I | TTAA | 1 cut(s) | 26 |
| Tru9I | TTAA | 1 cut(s) | 26 |
| TscAI | CASTG | 1 cut(s) | 237 |
| TspDTI | ATGAA | 4 cut(s) | 17, 95, 126, 134 |
| TspRI | CASTG | 1 cut(s) | 237 |
| XmnI | GAANNNNTTC | 2 cut(s) | 8, 20 |