Rmu_sc0024195.1_g000003

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0024195.1
OG0009678
Physical Location & Seq
Reverse (-)
12033 .. 12467
435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0024195.1_g000003.1.cds

Sequence Viewer

Length: 387 bp
atgttggtgctctcctcgtccacggcgtttgatcaagaagtcaggtcaagggattctctaacgactgcatcccacggtgatggcacgcctgcgcatacgctcaaaagagacagtttgcacccatactggttttggagccaaacacacccttcaaaagcgccggttaggcaagaagtgagcactgcagtgatttcgatgttgaatcaagctgaaattcctcctgacctgaactatacttttgtagctgtcatcccaaatgttaaagaggttacaactatgtcccatctccagccgattgctttgtgcaatgtcatctataaaatagcttccaaggttattgctaacagactcaagagtttcctgtccgatattgtttctctccaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

128

Amino Acids

14.21

Weight (kDa)

7.94

Isoelectric Point (pI)

39.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 93
AcsI RAATTY 1 cut(s) 213
AgsI TTSAA 2 cut(s) 153, 202
AleI CACNNNNGTG 1 cut(s) 185
AluBI AGCT 3 cut(s) 209, 245, 326
AluI AGCT 3 cut(s) 209, 245, 326
Alw21I GWGCWC 2 cut(s) 12, 182
Alw26I GTCTC 1 cut(s) 102
ApoI RAATTY 1 cut(s) 213
AspLEI GCGC 2 cut(s) 94, 160
AsuHPI GGTGA 1 cut(s) 89
Bbv12I GWGCWC 2 cut(s) 12, 182
BccI CCATC 2 cut(s) 74, 291
BceAI ACGGC 1 cut(s) 39
BcgI CGANNNNNNTGC 2 cut(s) 174, 208
BclI TGATCA 1 cut(s) 31
BcoDI GTCTC 1 cut(s) 102
BfmI CTRYAG 1 cut(s) 183
BfoI RGCGCY 1 cut(s) 161
BglI GCCNNNNNGGC 1 cut(s) 166
BmiI GGNNCC 1 cut(s) 137
BmsI GCATC 1 cut(s) 77
BpmI CTGGAG 1 cut(s) 272
BpuEI CTTGAG 1 cut(s) 335
BsaJI CCNNGG 3 cut(s) 21, 73, 330
Bse118I RCCGGY 1 cut(s) 160
Bse1I ACTGG 1 cut(s) 131
Bse3DI GCAATG 1 cut(s) 313
BseDI CCNNGG 3 cut(s) 21, 73, 330
BseGI GGATG 2 cut(s) 68, 249
BseMI GCAATG 1 cut(s) 313
BseNI ACTGG 1 cut(s) 131
BseRI GAGGAG 1 cut(s) 4
BsiHKAI GWGCWC 2 cut(s) 12, 182
BsiSI CCGG 1 cut(s) 161
BslFI GGGAC 1 cut(s) 265
BsmAI GTCTC 1 cut(s) 102
BsmFI GGGAC 1 cut(s) 265
Bsp1286I GDGCHC 2 cut(s) 12, 182
Bsp143I GATC 1 cut(s) 31
BspLI GGNNCC 1 cut(s) 137
BspMAI CTGCAG 1 cut(s) 187
BsrDI GCAATG 1 cut(s) 313
BsrFI RCCGGY 1 cut(s) 160
BsrI ACTGG 1 cut(s) 131
BssAI RCCGGY 1 cut(s) 160
BssECI CCNNGG 3 cut(s) 21, 73, 330
BssMI GATC 1 cut(s) 31
BssT1I CCWWGG 1 cut(s) 330
Bst4CI ACNGT 2 cut(s) 77, 113
BstC8I GCNNGC 2 cut(s) 86, 90
BstDSI CCRYGG 2 cut(s) 21, 73
BstF5I GGATG 2 cut(s) 68, 249
BstH2I RGCGCY 1 cut(s) 161
BstHHI GCGC 2 cut(s) 94, 160
BstKTI GATC 1 cut(s) 34
BstMAI GTCTC 1 cut(s) 102
BstMBI GATC 1 cut(s) 31
BstMWI GCNNNNNNNGC 1 cut(s) 166
BstSFI CTRYAG 1 cut(s) 183
BstXI CCANNNNNNTGG 1 cut(s) 80
BtgI CCRYGG 2 cut(s) 21, 73
BtsCI GGATG 2 cut(s) 68, 249
BtsI GCAGTG 2 cut(s) 180, 192
BtsIMutI CAGTG 2 cut(s) 180, 192
Cac8I GCNNGC 2 cut(s) 86, 90
CfoI GCGC 2 cut(s) 94, 160
Cfr10I RCCGGY 1 cut(s) 160
CspCI CAANNNNNGTGG 2 cut(s) 10, 45
CviJI RGCY 5 cut(s) 138, 209, 245, 292, 326
CviKI_1 RGCY 5 cut(s) 138, 209, 245, 292, 326
DpnI GATC 1 cut(s) 33
DpnII GATC 1 cut(s) 31
Eco130I CCWWGG 1 cut(s) 330
EcoT14I CCWWGG 1 cut(s) 330
ErhI CCWWGG 1 cut(s) 330
FaiI YATR 5 cut(s) 96, 124, 234, 278, 318
FaqI GGGAC 1 cut(s) 265
FbaI TGATCA 1 cut(s) 31
FokI GGATG 2 cut(s) 55, 236
FspI TGCGCA 1 cut(s) 93
GlaI GCGC 2 cut(s) 93, 159
GsuI CTGGAG 1 cut(s) 272
HaeII RGCGCY 1 cut(s) 161
HapII CCGG 1 cut(s) 161
HhaI GCGC 2 cut(s) 94, 160
Hin6I GCGC 2 cut(s) 92, 158
HinP1I GCGC 2 cut(s) 92, 158
HinfI GANTC 3 cut(s) 53, 202, 348
HpaII CCGG 1 cut(s) 161
HphI GGTGA 1 cut(s) 89
Hpy166II GTNNAC 1 cut(s) 21
Hpy188I TCNGA 1 cut(s) 367
Hpy188III TCNNGA 3 cut(s) 35, 221, 352
Hpy8I GTNNAC 1 cut(s) 21
HpyAV CCTTC 1 cut(s) 159
HpyCH4III ACNGT 2 cut(s) 77, 113
HpyCH4V TGCA 4 cut(s) 68, 118, 185, 306
HpyF10VI GCNNNNNNNGC 1 cut(s) 166
HspAI GCGC 2 cut(s) 92, 158
Ksp22I TGATCA 1 cut(s) 31
Kzo9I GATC 1 cut(s) 31
LmnI GCTCC 1 cut(s) 135
LpnPI CCDG 8 cut(s) 28, 102, 112, 174, 234, 239, 302, 374
LweI GCATC 1 cut(s) 77
MaeIII GTNAC 1 cut(s) 268
MalI GATC 1 cut(s) 33
MboI GATC 1 cut(s) 31
MhlI GDGCHC 2 cut(s) 12, 182
MluCI AATT 1 cut(s) 213
MlyI GAGTC 1 cut(s) 342
MnlI CCTC 3 cut(s) 25, 228, 259
MseI TTAA 1 cut(s) 261
MslI CAYNNNNRTG 2 cut(s) 78, 185
MspI CCGG 1 cut(s) 161
MwoI GCNNNNNNNGC 1 cut(s) 166
NdeII GATC 1 cut(s) 31
NlaIV GGNNCC 1 cut(s) 137
NsbI TGCGCA 1 cut(s) 93
OliI CACNNNNGTG 1 cut(s) 185
PcsI WCGNNNNNNNCGW 1 cut(s) 23
PfeI GAWTC 2 cut(s) 53, 202
PleI GAGTC 1 cut(s) 342
PpsI GAGTC 1 cut(s) 342
PspN4I GGNNCC 1 cut(s) 137
PstI CTGCAG 1 cut(s) 187
RseI CAYNNNNRTG 2 cut(s) 78, 185
SaqAI TTAA 1 cut(s) 261
Sau3AI GATC 1 cut(s) 31
SchI GAGTC 1 cut(s) 342
SduI GDGCHC 2 cut(s) 12, 182
SetI ASST 7 cut(s) 47, 211, 228, 247, 270, 328, 336
SfaNI GCATC 1 cut(s) 77
SfcI CTRYAG 1 cut(s) 183
SmiMI CAYNNNNRTG 2 cut(s) 78, 185
SmlI CTYRAG 1 cut(s) 350
SmoI CTYRAG 1 cut(s) 350
Sse9I AATT 1 cut(s) 213
StyI CCWWGG 1 cut(s) 330
TaaI ACNGT 2 cut(s) 77, 113
TaqI TCGA 1 cut(s) 194
TasI AATT 1 cut(s) 213
TfiI GAWTC 2 cut(s) 53, 202
Tru1I TTAA 1 cut(s) 261
Tru9I TTAA 1 cut(s) 261
TscAI CASTG 2 cut(s) 187, 192
TspRI CASTG 2 cut(s) 187, 192
XapI RAATTY 1 cut(s) 213
XcmI CCANNNNNNNNNTGG 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.