Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g10222 |
| pyrus_communis | pycom05g03820 pycom13g14160 |
| rosa_chinensis | RchiOBHm_Chr3g0481911 RchiOBHm_Chr7g0230761 |
| rosa_multiflora | Rmu_co8504529.1_g000002 Rmu_sc0001350.1_g000011 Rmu_sc0001847.1_g000004 Rmu_sc0006323.1_g000012 Rmu_sc0007994.1_g000004 Rmu_sc0010800.1_g000001 Rmu_sc0013801.1_g000003 Rmu_sc0018646.1_g000004 Rmu_sc0024195.1_g000003 Rmu_sc0037386.1_g000001 Rmu_sc0040395.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00233950 Rroxscaffold_3G00238590 Rroxscaffold_5G00334460 Rroxscaffold_7G00177700 Rroxscaffold_7G00178180 |
| rosa_rugosa | Rorug07G0126600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 4 cut(s) | 8, 398, 530, 4393 |
| Acc36I | ACCTGC | 5 cut(s) | 334, 1591, 1975, 2761, 3748 |
| Acc65I | GGTACC | 1 cut(s) | 1281 |
| AccB1I | GGYRCC | 5 cut(s) | 203, 236, 1281, 2848, 3406 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 124, 437, 578 |
| AccBSI | CCGCTC | 1 cut(s) | 2296 |
| AccI | GTMKAC | 1 cut(s) | 787 |
| AccII | CGCG | 1 cut(s) | 4536 |
| AciI | CCGC | 9 cut(s) | 845, 887, 1135, 2296, 2991, 3415, 3530, 4536, 4768 |
| AclWI | GGATC | 9 cut(s) | 33, 122, 135, 1572, 2167, 2204, 2588, 3203, 3799 |
| AcoI | YGGCCR | 6 cut(s) | 262, 1905, 2313, 2436, 2577, 3310 |
| AcuI | CTGAAG | 8 cut(s) | 258, 1430, 1719, 2384, 2685, 2688, 3483, 4086 |
| AcvI | CACGTG | 1 cut(s) | 1388 |
| AcyI | GRCGYC | 4 cut(s) | 5, 395, 527, 4390 |
| AdeI | CACNNNGTG | 1 cut(s) | 2234 |
| AflIII | ACRYGT | 1 cut(s) | 1385 |
| AhlI | ACTAGT | 1 cut(s) | 2909 |
| AjiI | CACGTC | 2 cut(s) | 2180, 4745 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 565, 597, 2036, 2068, 2858, 2890 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1221, 1253 |
| Alw21I | GWGCWC | 3 cut(s) | 1300, 2654, 4693 |
| Alw26I | GTCTC | 9 cut(s) | 558, 671, 1960, 2062, 3224, 3279, 3958, 4536, 4735 |
| Alw44I | GTGCAC | 1 cut(s) | 2650 |
| AlwI | GGATC | 9 cut(s) | 33, 122, 135, 1572, 2167, 2204, 2588, 3203, 3799 |
| AlwNI | CAGNNNCTG | 6 cut(s) | 1028, 3656, 3956, 4009, 4109, 4274 |
| Ama87I | CYCGRG | 4 cut(s) | 500, 2322, 2445, 4552 |
| ApaI | GGGCCC | 1 cut(s) | 964 |
| ApaLI | GTGCAC | 1 cut(s) | 2650 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 380, 412, 1499, 1531 |
| AseI | ATTAAT | 1 cut(s) | 2643 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 144, 996, 1850, 3378 |
| Asp718I | GGTACC | 1 cut(s) | 1281 |
| AspA2I | CCTAGG | 1 cut(s) | 3344 |
| AspLEI | GCGC | 1 cut(s) | 338 |
| AsuC2I | CCSGG | 4 cut(s) | 501, 502, 1140, 3990 |
| AsuII | TTCGAA | 1 cut(s) | 4486 |
| AsuNHI | GCTAGC | 2 cut(s) | 332, 2251 |
| AvaI | CYCGRG | 4 cut(s) | 500, 2322, 2445, 4552 |
| AvrII | CCTAGG | 1 cut(s) | 3344 |
| BaeGI | GKGCMC | 5 cut(s) | 158, 206, 964, 2654, 3409 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 2934, 2967, 3930, 3963 |
| BalI | TGGCCA | 4 cut(s) | 264, 2315, 2438, 3312 |
| BamHI | GGATCC | 1 cut(s) | 127 |
| BanI | GGYRCC | 5 cut(s) | 203, 236, 1281, 2848, 3406 |
| BanII | GRGCYC | 2 cut(s) | 964, 2733 |
| BauI | CACGAG | 2 cut(s) | 1620, 1788 |
| BbrPI | CACGTG | 1 cut(s) | 1388 |
| BbsI | GAAGAC | 3 cut(s) | 1853, 2190, 4000 |
| Bbv12I | GWGCWC | 3 cut(s) | 1300, 2654, 4693 |
| BbvCI | CCTCAGC | 2 cut(s) | 3324, 3468 |
| BceAI | ACGGC | 1 cut(s) | 2050 |
| BcgI | CGANNNNNNTGC | 8 cut(s) | 2852, 2886, 3237, 3271, 3756, 3790, 4514, 4548 |
| BclI | TGATCA | 4 cut(s) | 2110, 2746, 4045, 4315 |
| BcnI | CCSGG | 4 cut(s) | 501, 502, 1140, 3990 |
| BcoDI | GTCTC | 9 cut(s) | 558, 671, 1960, 2062, 3224, 3279, 3958, 4536, 4735 |
| BcuI | ACTAGT | 1 cut(s) | 2909 |
| BfmI | CTRYAG | 6 cut(s) | 507, 3168, 3558, 3609, 3696, 4066 |
| BfuAI | ACCTGC | 5 cut(s) | 334, 1591, 1975, 2761, 3748 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 4636 |
| BlnI | CCTAGG | 1 cut(s) | 3344 |
| BlpI | GCTNAGC | 1 cut(s) | 4302 |
| BmcAI | AGTACT | 2 cut(s) | 3001, 3589 |
| BmeT110I | CYCGRG | 4 cut(s) | 500, 2322, 2445, 4552 |
| BmgBI | CACGTC | 2 cut(s) | 2180, 4745 |
| BmrI | ACTGGG | 4 cut(s) | 93, 693, 1743, 4418 |
| BmtI | GCTAGC | 2 cut(s) | 336, 2255 |
| BmuI | ACTGGG | 4 cut(s) | 93, 693, 1743, 4418 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1749 |
| BpiI | GAAGAC | 3 cut(s) | 1853, 2190, 4000 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 749, 781 |
| BpmI | CTGGAG | 5 cut(s) | 582, 924, 1552, 1942, 2503 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1302, 3324, 3468 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 4302 |
| Bpu14I | TTCGAA | 1 cut(s) | 4486 |
| BpuEI | CTTGAG | 7 cut(s) | 1508, 2340, 2463, 2818, 3059, 3279, 3651 |
| BpuMI | CCSGG | 4 cut(s) | 501, 502, 1140, 3990 |
| BsaAI | YACGTR | 1 cut(s) | 1388 |
| BsaBI | GATNNNNATC | 4 cut(s) | 181, 3150, 3207, 3249 |
| BsaHI | GRCGYC | 4 cut(s) | 5, 395, 527, 4390 |
| BsaI | GGTCTC | 2 cut(s) | 2062, 3224 |
| BsaWI | WCCGGW | 1 cut(s) | 1351 |
| Bse118I | RCCGGY | 1 cut(s) | 2579 |
| Bse3DI | GCAATG | 3 cut(s) | 63, 407, 3606 |
| Bse8I | GATNNNNATC | 4 cut(s) | 181, 3150, 3207, 3249 |
| BseJI | GATNNNNATC | 4 cut(s) | 181, 3150, 3207, 3249 |
| BseMI | GCAATG | 3 cut(s) | 63, 407, 3606 |
| BseRI | GAGGAG | 8 cut(s) | 1620, 1850, 2303, 2306, 2426, 2429, 3654, 4428 |
| BseSI | GKGCMC | 5 cut(s) | 158, 206, 964, 2654, 3409 |
| BseYI | CCCAGC | 4 cut(s) | 819, 2037, 2605, 4394 |
| BsgI | GTGCAG | 2 cut(s) | 444, 4272 |
| Bsh1236I | CGCG | 1 cut(s) | 4536 |
| BshNI | GGYRCC | 5 cut(s) | 203, 236, 1281, 2848, 3406 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1300, 2654, 4693 |
| BsiHKCI | CYCGRG | 4 cut(s) | 500, 2322, 2445, 4552 |
| BsiSI | CCGG | 6 cut(s) | 501, 1140, 1352, 2580, 3337, 3990 |
| BsmAI | GTCTC | 9 cut(s) | 558, 671, 1960, 2062, 3224, 3279, 3958, 4536, 4735 |
| BsmBI | CGTCTC | 1 cut(s) | 4735 |
| BsmI | GAATGC | 5 cut(s) | 499, 613, 1257, 3109, 3328 |
| Bso31I | GGTCTC | 2 cut(s) | 2062, 3224 |
| BsoBI | CYCGRG | 4 cut(s) | 500, 2322, 2445, 4552 |
| Bsp119I | TTCGAA | 1 cut(s) | 4486 |
| Bsp120I | GGGCCC | 1 cut(s) | 960 |
| Bsp1286I | GDGCHC | 8 cut(s) | 158, 206, 964, 1300, 2654, 2733, 3409, 4693 |
| Bsp1407I | TGTACA | 1 cut(s) | 1104 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 4302 |
| Bsp19I | CCATGG | 3 cut(s) | 118, 2136, 4762 |
| BspACI | CCGC | 9 cut(s) | 845, 887, 1135, 2296, 2991, 3415, 3530, 4536, 4768 |
| BspFNI | CGCG | 1 cut(s) | 4536 |
| BspHI | TCATGA | 5 cut(s) | 319, 1930, 2818, 4042, 4048 |
| BspMAI | CTGCAG | 2 cut(s) | 511, 3700 |
| BspMI | ACCTGC | 5 cut(s) | 334, 1591, 1975, 2761, 3748 |
| BspOI | GCTAGC | 2 cut(s) | 336, 2255 |
| BspPI | GGATC | 9 cut(s) | 33, 122, 135, 1572, 2167, 2204, 2588, 3203, 3799 |
| BspT104I | TTCGAA | 1 cut(s) | 4486 |
| BspT107I | GGYRCC | 5 cut(s) | 203, 236, 1281, 2848, 3406 |
| BspTNI | GGTCTC | 2 cut(s) | 2062, 3224 |
| BsrBI | CCGCTC | 1 cut(s) | 2296 |
| BsrDI | GCAATG | 3 cut(s) | 63, 407, 3606 |
| BsrFI | RCCGGY | 1 cut(s) | 2579 |
| BsrGI | TGTACA | 1 cut(s) | 1104 |
| BssAI | RCCGGY | 1 cut(s) | 2579 |
| BssNI | GRCGYC | 4 cut(s) | 5, 395, 527, 4390 |
| BssSI | CACGAG | 2 cut(s) | 1620, 1788 |
| Bst2BI | CACGAG | 2 cut(s) | 1620, 1788 |
| Bst6I | CTCTTC | 6 cut(s) | 43, 722, 2280, 2331, 2403, 2454 |
| BstACI | GRCGYC | 4 cut(s) | 5, 395, 527, 4390 |
| BstAPI | GCANNNNNTGC | 5 cut(s) | 194, 494, 1670, 2234, 3965 |
| BstAUI | TGTACA | 1 cut(s) | 1104 |
| BstBAI | YACGTR | 1 cut(s) | 1388 |
| BstBI | TTCGAA | 1 cut(s) | 4486 |
| BstC8I | GCNNGC | 7 cut(s) | 334, 1257, 1979, 2235, 2253, 2847, 3746 |
| BstDSI | CCRYGG | 3 cut(s) | 118, 2136, 4762 |
| BstEII | GGTNACC | 1 cut(s) | 1347 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 3238, 3666, 4683 |
| BstFNI | CGCG | 1 cut(s) | 4536 |
| BstHHI | GCGC | 1 cut(s) | 338 |
| BstMAI | GTCTC | 9 cut(s) | 558, 671, 1960, 2062, 3224, 3279, 3958, 4536, 4735 |
| BstNSI | RCATGY | 2 cut(s) | 1981, 3925 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1749 |
| BstPI | GGTNACC | 1 cut(s) | 1347 |
| BstSFI | CTRYAG | 6 cut(s) | 507, 3168, 3558, 3609, 3696, 4066 |
| BstSLI | GKGCMC | 5 cut(s) | 158, 206, 964, 2654, 3409 |
| BstUI | CGCG | 1 cut(s) | 4536 |
| BstV2I | GAAGAC | 3 cut(s) | 1853, 2190, 4000 |
| BstX2I | RGATCY | 3 cut(s) | 127, 2159, 3208 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 489, 4634 |
| BstYI | RGATCY | 3 cut(s) | 127, 2159, 3208 |
| BtgI | CCRYGG | 3 cut(s) | 118, 2136, 4762 |
| BtgZI | GCGATG | 1 cut(s) | 3405 |
| BtrI | CACGTC | 2 cut(s) | 2180, 4745 |
| BtsI | GCAGTG | 5 cut(s) | 427, 1948, 2802, 3705, 4657 |
| BveI | ACCTGC | 5 cut(s) | 334, 1591, 1975, 2761, 3748 |
| Cac8I | GCNNGC | 7 cut(s) | 334, 1257, 1979, 2235, 2253, 2847, 3746 |
| CaiI | CAGNNNCTG | 6 cut(s) | 1028, 3656, 3956, 4009, 4109, 4274 |
| CciI | TCATGA | 5 cut(s) | 319, 1930, 2818, 4042, 4048 |
| CfoI | GCGC | 1 cut(s) | 338 |
| Cfr10I | RCCGGY | 1 cut(s) | 2579 |
| Cfr9I | CCCGGG | 1 cut(s) | 500 |
| CseI | GACGC | 3 cut(s) | 401, 1467, 2121 |
| CsiI | ACCWGGT | 2 cut(s) | 790, 1891 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2055, 2090 |
| DraIII | CACNNNGTG | 1 cut(s) | 2234 |
| EaeI | YGGCCR | 6 cut(s) | 262, 1905, 2313, 2436, 2577, 3310 |
| Eam1104I | CTCTTC | 6 cut(s) | 43, 722, 2280, 2331, 2403, 2454 |
| EarI | CTCTTC | 6 cut(s) | 43, 722, 2280, 2331, 2403, 2454 |
| EciI | GGCGGA | 2 cut(s) | 1124, 3545 |
| Eco147I | AGGCCT | 1 cut(s) | 436 |
| Eco24I | GRGCYC | 2 cut(s) | 964, 2733 |
| Eco31I | GGTCTC | 2 cut(s) | 2062, 3224 |
| Eco32I | GATATC | 1 cut(s) | 706 |
| Eco57I | CTGAAG | 8 cut(s) | 258, 1430, 1719, 2384, 2685, 2688, 3483, 4086 |
| Eco72I | CACGTG | 1 cut(s) | 1388 |
| Eco88I | CYCGRG | 4 cut(s) | 500, 2322, 2445, 4552 |
| Eco91I | GGTNACC | 1 cut(s) | 1347 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 3238, 3666, 4683 |
| EcoO109I | RGGNCCY | 5 cut(s) | 935, 947, 960, 967, 4676 |
| EcoO65I | GGTNACC | 1 cut(s) | 1347 |
| EcoRI | GAATTC | 4 cut(s) | 1594, 3349, 3892, 4696 |
| EcoRV | GATATC | 1 cut(s) | 706 |
| EcoT22I | ATGCAT | 6 cut(s) | 199, 865, 1983, 2745, 3109, 3250 |
| EcoT38I | GRGCYC | 2 cut(s) | 964, 2733 |
| Esp3I | CGTCTC | 1 cut(s) | 4735 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1570, 1602, 2036, 2068 |
| FauI | CCCGC | 3 cut(s) | 852, 894, 4529 |
| FauNDI | CATATG | 1 cut(s) | 1116 |
| FbaI | TGATCA | 4 cut(s) | 2110, 2746, 4045, 4315 |
| FblI | GTMKAC | 1 cut(s) | 787 |
| FriOI | GRGCYC | 2 cut(s) | 964, 2733 |
| GlaI | GCGC | 1 cut(s) | 337 |
| GsaI | CCCAGC | 4 cut(s) | 823, 2041, 2609, 4398 |
| GsuI | CTGGAG | 5 cut(s) | 582, 924, 1552, 1942, 2503 |
| HapII | CCGG | 6 cut(s) | 501, 1140, 1352, 2580, 3337, 3990 |
| HgaI | GACGC | 3 cut(s) | 401, 1467, 2121 |
| HhaI | GCGC | 1 cut(s) | 338 |
| Hin1I | GRCGYC | 4 cut(s) | 5, 395, 527, 4390 |
| Hin6I | GCGC | 1 cut(s) | 336 |
| HinP1I | GCGC | 1 cut(s) | 336 |
| HincII | GTYRAC | 2 cut(s) | 1861, 2082 |
| HindII | GTYRAC | 2 cut(s) | 1861, 2082 |
| HpaII | CCGG | 6 cut(s) | 501, 1140, 1352, 2580, 3337, 3990 |
| Hpy99I | CGWCG | 2 cut(s) | 10, 2036 |
| Hsp92I | GRCGYC | 4 cut(s) | 5, 395, 527, 4390 |
| HspAI | GCGC | 1 cut(s) | 336 |
| KpnI | GGTACC | 1 cut(s) | 1285 |
| Ksp22I | TGATCA | 4 cut(s) | 2110, 2746, 4045, 4315 |
| MabI | ACCWGGT | 2 cut(s) | 790, 1891 |
| MbiI | CCGCTC | 1 cut(s) | 2296 |
| MfeI | CAATTG | 1 cut(s) | 2688 |
| MflI | RGATCY | 3 cut(s) | 127, 2159, 3208 |
| MhlI | GDGCHC | 8 cut(s) | 158, 206, 964, 1300, 2654, 2733, 3409, 4693 |
| MlsI | TGGCCA | 4 cut(s) | 264, 2315, 2438, 3312 |
| MluNI | TGGCCA | 4 cut(s) | 264, 2315, 2438, 3312 |
| MlyI | GAGTC | 5 cut(s) | 623, 2183, 3014, 3050, 4538 |
| MmeI | TCCRAC | 3 cut(s) | 596, 2856, 2956 |
| Mox20I | TGGCCA | 4 cut(s) | 264, 2315, 2438, 3312 |
| Mph1103I | ATGCAT | 6 cut(s) | 199, 865, 1983, 2745, 3109, 3250 |
| MroXI | GAANNNNTTC | 4 cut(s) | 144, 996, 1850, 3378 |
| MscI | TGGCCA | 4 cut(s) | 264, 2315, 2438, 3312 |
| MseI | TTAA | 8 cut(s) | 1775, 2016, 2625, 2643, 2952, 3305, 4014, 4662 |
| MslI | CAYNNNNRTG | 8 cut(s) | 858, 1377, 1679, 2118, 2738, 2912, 4047, 4311 |
| Msp20I | TGGCCA | 4 cut(s) | 264, 2315, 2438, 3312 |
| MspA1I | CMGCKG | 3 cut(s) | 1025, 1259, 1667 |
| MspI | CCGG | 6 cut(s) | 501, 1140, 1352, 2580, 3337, 3990 |
| MunI | CAATTG | 1 cut(s) | 2688 |
| Mva1269I | GAATGC | 5 cut(s) | 499, 613, 1257, 3109, 3328 |
| MvnI | CGCG | 1 cut(s) | 4536 |
| NciI | CCSGG | 4 cut(s) | 501, 502, 1140, 3990 |
| NcoI | CCATGG | 3 cut(s) | 118, 2136, 4762 |
| NdeI | CATATG | 1 cut(s) | 1116 |
| NheI | GCTAGC | 2 cut(s) | 332, 2251 |
| NmeAIII | GCCGAG | 1 cut(s) | 1883 |
| NmuCI | GTSAC | 5 cut(s) | 523, 2525, 3417, 3874, 4652 |
| NsiI | ATGCAT | 6 cut(s) | 199, 865, 1983, 2745, 3109, 3250 |
| NspI | RCATGY | 2 cut(s) | 1981, 3925 |
| NspV | TTCGAA | 1 cut(s) | 4486 |
| PaeI | GCATGC | 1 cut(s) | 1981 |
| PaeR7I | CTCGAG | 2 cut(s) | 2322, 2445 |
| PagI | TCATGA | 5 cut(s) | 319, 1930, 2818, 4042, 4048 |
| PceI | AGGCCT | 1 cut(s) | 436 |
| PctI | GAATGC | 5 cut(s) | 499, 613, 1257, 3109, 3328 |
| PdmI | GAANNNNTTC | 4 cut(s) | 144, 996, 1850, 3378 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 124, 437, 578 |
| PfoI | TCCNGGA | 1 cut(s) | 3728 |
| PleI | GAGTC | 5 cut(s) | 622, 2183, 3013, 3049, 4537 |
| PmaCI | CACGTG | 1 cut(s) | 1388 |
| PmlI | CACGTG | 1 cut(s) | 1388 |
| PpsI | GAGTC | 5 cut(s) | 622, 2183, 3013, 3049, 4537 |
| Ppu21I | YACGTR | 1 cut(s) | 1388 |
| PpuMI | RGGWCCY | 4 cut(s) | 935, 947, 967, 4676 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1749 |
| PshBI | ATTAAT | 1 cut(s) | 2643 |
| Psp5II | RGGWCCY | 4 cut(s) | 935, 947, 967, 4676 |
| PspCI | CACGTG | 1 cut(s) | 1388 |
| PspEI | GGTNACC | 1 cut(s) | 1347 |
| PspFI | CCCAGC | 4 cut(s) | 819, 2037, 2605, 4394 |
| PspOMI | GGGCCC | 1 cut(s) | 960 |
| PspPPI | RGGWCCY | 4 cut(s) | 935, 947, 967, 4676 |
| PspXI | VCTCGAGB | 2 cut(s) | 2322, 2445 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 3969, 4001, 4158, 4190 |
| PstI | CTGCAG | 2 cut(s) | 511, 3700 |
| PstNI | CAGNNNCTG | 6 cut(s) | 1028, 3656, 3956, 4009, 4109, 4274 |
| PsuI | RGATCY | 3 cut(s) | 127, 2159, 3208 |
| PvuII | CAGCTG | 3 cut(s) | 1025, 1259, 1667 |
| RseI | CAYNNNNRTG | 8 cut(s) | 858, 1377, 1679, 2118, 2738, 2912, 4047, 4311 |
| SaqAI | TTAA | 8 cut(s) | 1775, 2016, 2625, 2643, 2952, 3305, 4014, 4662 |
| ScaI | AGTACT | 2 cut(s) | 3001, 3589 |
| SchI | GAGTC | 5 cut(s) | 623, 2183, 3014, 3050, 4538 |
| SduI | GDGCHC | 8 cut(s) | 158, 206, 964, 1300, 2654, 2733, 3409, 4693 |
| SexAI | ACCWGGT | 2 cut(s) | 790, 1891 |
| SfcI | CTRYAG | 6 cut(s) | 507, 3168, 3558, 3609, 3696, 4066 |
| Sfr274I | CTCGAG | 2 cut(s) | 2322, 2445 |
| SfuI | TTCGAA | 1 cut(s) | 4486 |
| SlaI | CTCGAG | 2 cut(s) | 2322, 2445 |
| SmaI | CCCGGG | 1 cut(s) | 502 |
| SmiMI | CAYNNNNRTG | 8 cut(s) | 858, 1377, 1679, 2118, 2738, 2912, 4047, 4311 |
| SmlI | CTYRAG | 9 cut(s) | 1487, 2322, 2355, 2445, 2478, 2833, 3038, 3294, 3666 |
| SmoI | CTYRAG | 9 cut(s) | 1487, 2322, 2355, 2445, 2478, 2833, 3038, 3294, 3666 |
| SpeI | ACTAGT | 1 cut(s) | 2909 |
| SphI | GCATGC | 1 cut(s) | 1981 |
| SseBI | AGGCCT | 1 cut(s) | 436 |
| SsiI | CCGC | 9 cut(s) | 845, 887, 1135, 2296, 2991, 3415, 3530, 4536, 4768 |
| StuI | AGGCCT | 1 cut(s) | 436 |
| TaqII | GACCGA | 1 cut(s) | 1617 |
| TatI | WGTACW | 3 cut(s) | 1104, 2999, 3587 |
| TauI | GCSGC | 1 cut(s) | 4771 |
| Tru1I | TTAA | 8 cut(s) | 1775, 2016, 2625, 2643, 2952, 3305, 4014, 4662 |
| Tru9I | TTAA | 8 cut(s) | 1775, 2016, 2625, 2643, 2952, 3305, 4014, 4662 |
| TseFI | GTSAC | 5 cut(s) | 523, 2525, 3417, 3874, 4652 |
| Tsp45I | GTSAC | 5 cut(s) | 523, 2525, 3417, 3874, 4652 |
| TspGWI | ACGGA | 1 cut(s) | 682 |
| TspMI | CCCGGG | 1 cut(s) | 500 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 124, 437, 578 |
| VneI | GTGCAC | 1 cut(s) | 2650 |
| VspI | ATTAAT | 1 cut(s) | 2643 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 3238, 3666, 4683 |
| XbaI | TCTAGA | 1 cut(s) | 617 |
| XceI | RCATGY | 2 cut(s) | 1981, 3925 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 827, 971, 1091 |
| XhoI | CTCGAG | 2 cut(s) | 2322, 2445 |
| XmaI | CCCGGG | 1 cut(s) | 500 |
| XmaJI | CCTAGG | 1 cut(s) | 3344 |
| XmiI | GTMKAC | 1 cut(s) | 787 |
| XmnI | GAANNNNTTC | 4 cut(s) | 144, 996, 1850, 3378 |
| ZraI | GACGTC | 4 cut(s) | 6, 396, 528, 4391 |
| ZrmI | AGTACT | 2 cut(s) | 3001, 3589 |
| Zsp2I | ATGCAT | 6 cut(s) | 199, 865, 1983, 2745, 3109, 3250 |