Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g10222 |
| pyrus_communis | pycom05g03820 pycom13g14160 |
| rosa_chinensis | RchiOBHm_Chr3g0481911 RchiOBHm_Chr7g0230761 |
| rosa_multiflora | Rmu_co8504529.1_g000002 Rmu_sc0001350.1_g000011 Rmu_sc0001847.1_g000004 Rmu_sc0006323.1_g000012 Rmu_sc0007994.1_g000004 Rmu_sc0010800.1_g000001 Rmu_sc0013801.1_g000003 Rmu_sc0018646.1_g000004 Rmu_sc0024195.1_g000003 Rmu_sc0037386.1_g000001 Rmu_sc0040395.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00233950 Rroxscaffold_3G00238590 Rroxscaffold_5G00334460 Rroxscaffold_7G00177700 Rroxscaffold_7G00178180 |
| rosa_rugosa | Rorug07G0126600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 366 |
| AclWI | GGATC | 1 cut(s) | 20 |
| AcsI | RAATTY | 1 cut(s) | 175 |
| AfaI | GTAC | 2 cut(s) | 14, 144 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 45 |
| AgsI | TTSAA | 3 cut(s) | 215, 254, 277 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 28, 60 |
| AluBI | AGCT | 1 cut(s) | 84 |
| AluI | AGCT | 1 cut(s) | 84 |
| AlwI | GGATC | 1 cut(s) | 20 |
| ApoI | RAATTY | 1 cut(s) | 175 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 126, 159 |
| BccI | CCATC | 1 cut(s) | 167 |
| BfaI | CTAG | 1 cut(s) | 23 |
| BglII | AGATCT | 1 cut(s) | 95 |
| BmsI | GCATC | 1 cut(s) | 62 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 45 |
| BseGI | GGATG | 2 cut(s) | 53, 282 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 45 |
| BseMII | CTCAG | 1 cut(s) | 171 |
| BsgI | GTGCAG | 1 cut(s) | 222 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 45 |
| Bsp143I | GATC | 3 cut(s) | 25, 95, 125 |
| BspACI | CCGC | 1 cut(s) | 366 |
| BspCNI | CTCAG | 1 cut(s) | 172 |
| BspPI | GGATC | 1 cut(s) | 20 |
| BssMI | GATC | 3 cut(s) | 25, 95, 125 |
| Bst4CI | ACNGT | 2 cut(s) | 139, 147 |
| BstC8I | GCNNGC | 3 cut(s) | 51, 82, 86 |
| BstDEI | CTNAG | 3 cut(s) | 180, 325, 354 |
| BstF5I | GGATG | 2 cut(s) | 53, 282 |
| BstKTI | GATC | 3 cut(s) | 28, 98, 128 |
| BstMBI | GATC | 3 cut(s) | 25, 95, 125 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 17 |
| BstX2I | RGATCY | 2 cut(s) | 25, 95 |
| BstYI | RGATCY | 2 cut(s) | 25, 95 |
| BtsCI | GGATG | 2 cut(s) | 53, 282 |
| BtsI | GCAGTG | 1 cut(s) | 234 |
| BtsIMutI | CAGTG | 1 cut(s) | 234 |
| Cac8I | GCNNGC | 3 cut(s) | 51, 82, 86 |
| Csp6I | GTAC | 2 cut(s) | 13, 143 |
| CviAII | CATG | 2 cut(s) | 89, 319 |
| CviJI | RGCY | 1 cut(s) | 84 |
| CviKI_1 | RGCY | 1 cut(s) | 84 |
| CviQI | GTAC | 2 cut(s) | 13, 143 |
| DdeI | CTNAG | 3 cut(s) | 180, 325, 354 |
| DpnI | GATC | 3 cut(s) | 27, 97, 127 |
| DpnII | GATC | 3 cut(s) | 25, 95, 125 |
| FaeI | CATG | 2 cut(s) | 92, 322 |
| FaiI | YATR | 8 cut(s) | 42, 72, 78, 90, 197, 320, 343, 373 |
| FatI | CATG | 2 cut(s) | 88, 318 |
| FokI | GGATG | 2 cut(s) | 40, 269 |
| FspBI | CTAG | 1 cut(s) | 23 |
| Hin1II | CATG | 2 cut(s) | 92, 322 |
| HinfI | GANTC | 4 cut(s) | 4, 266, 310, 350 |
| Hpy188I | TCNGA | 4 cut(s) | 30, 125, 181, 300 |
| HpyAV | CCTTC | 2 cut(s) | 209, 248 |
| HpyCH4III | ACNGT | 2 cut(s) | 139, 147 |
| HpyCH4V | TGCA | 4 cut(s) | 88, 172, 239, 272 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 17 |
| HpyF3I | CTNAG | 3 cut(s) | 180, 325, 354 |
| Hsp92II | CATG | 2 cut(s) | 92, 322 |
| Kzo9I | GATC | 3 cut(s) | 25, 95, 125 |
| LpnPI | CCDG | 1 cut(s) | 327 |
| LweI | GCATC | 1 cut(s) | 62 |
| MaeI | CTAG | 1 cut(s) | 23 |
| MaeIII | GTNAC | 2 cut(s) | 147, 223 |
| MalI | GATC | 3 cut(s) | 27, 97, 127 |
| MboI | GATC | 3 cut(s) | 25, 95, 125 |
| MboII | GAAGA | 2 cut(s) | 45, 112 |
| MflI | RGATCY | 2 cut(s) | 25, 95 |
| MluCI | AATT | 3 cut(s) | 73, 175, 291 |
| MlyI | GAGTC | 2 cut(s) | 275, 304 |
| MnlI | CCTC | 1 cut(s) | 175 |
| MseI | TTAA | 1 cut(s) | 204 |
| MslI | CAYNNNNRTG | 1 cut(s) | 75 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 17 |
| NdeII | GATC | 3 cut(s) | 25, 95, 125 |
| NlaIII | CATG | 2 cut(s) | 92, 322 |
| PfeI | GAWTC | 1 cut(s) | 350 |
| PleI | GAGTC | 2 cut(s) | 274, 304 |
| PpsI | GAGTC | 2 cut(s) | 274, 304 |
| PsuI | RGATCY | 2 cut(s) | 25, 95 |
| RsaI | GTAC | 2 cut(s) | 14, 144 |
| RsaNI | GTAC | 2 cut(s) | 13, 143 |
| RseI | CAYNNNNRTG | 1 cut(s) | 75 |
| SaqAI | TTAA | 1 cut(s) | 204 |
| Sau3AI | GATC | 3 cut(s) | 25, 95, 125 |
| SchI | GAGTC | 2 cut(s) | 275, 304 |
| SetI | ASST | 5 cut(s) | 41, 86, 169, 259, 360 |
| SfaNI | GCATC | 1 cut(s) | 62 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 75 |
| Sse9I | AATT | 3 cut(s) | 73, 175, 291 |
| SsiI | CCGC | 1 cut(s) | 366 |
| SspMI | CTAG | 1 cut(s) | 23 |
| TaaI | ACNGT | 2 cut(s) | 139, 147 |
| TaqII | GACCGA | 1 cut(s) | 322 |
| TasI | AATT | 3 cut(s) | 73, 175, 291 |
| TfiI | GAWTC | 1 cut(s) | 350 |
| Tru1I | TTAA | 1 cut(s) | 204 |
| Tru9I | TTAA | 1 cut(s) | 204 |
| TscAI | CASTG | 1 cut(s) | 241 |
| TspDTI | ATGAA | 3 cut(s) | 59, 105, 335 |
| TspGWI | ACGGA | 1 cut(s) | 46 |
| TspRI | CASTG | 1 cut(s) | 241 |
| XapI | RAATTY | 1 cut(s) | 175 |
| XspI | CTAG | 1 cut(s) | 23 |