Rmu_sc0007994.1_g000004

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007994.1
OG0009678
Physical Location & Seq
Forward (+)
19850 .. 20386
537 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007994.1_g000004.1.cds

Sequence Viewer

Length: 537 bp
atgcataatgcggagaaacaagccctcaatgttcgattccatgagttacttactcaagaagaaactttctggatccagaggtccaaagctttgtggttgaaggcaggagatcgtaatactgccttctttcatcgcaaggcttctaatagacctgctcgaaattctattaaagggttgcataatgctgaaggtttatgggtgtctaagataaaagatgttgagctagtggtcacagattattacaaaggactttatacttgtgagggagttcatgggaccgctttgaacattattctcaacacagttcaacctcgggtgactcaagctatgaatcaagagttaatggcagtatattctgatgaagagatcagagcggcgttattccacatgcacccttctaaagctccgggacctgatgggatgtccccttttttcttccagaagtattggcatgtcgtcggaccggatgtgtgtacagcagtcaagtccttcttatcttcaggagtcttgcctacggaagtcaattttacactgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

178

Amino Acids

20.19

Weight (kDa)

8.54

Isoelectric Point (pI)

45.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 160
AccBSI CCGCTC 1 cut(s) 374
AciI CCGC 3 cut(s) 11, 279, 374
AclWI GGATC 2 cut(s) 67, 80
AcsI RAATTY 1 cut(s) 160
AcuI CTGAAG 2 cut(s) 207, 483
AfaI GTAC 1 cut(s) 475
AgsI TTSAA 3 cut(s) 100, 286, 308
AluBI AGCT 4 cut(s) 89, 223, 326, 404
AluI AGCT 4 cut(s) 89, 223, 326, 404
AlwI GGATC 2 cut(s) 67, 80
Ama87I CYCGRG 1 cut(s) 312
ApoI RAATTY 1 cut(s) 160
AspS9I GGNCC 4 cut(s) 81, 276, 410, 461
AsuC2I CCSGG 1 cut(s) 408
AsuHPI GGTGA 1 cut(s) 328
AvaI CYCGRG 1 cut(s) 312
AvaII GGWCC 4 cut(s) 81, 276, 410, 461
BamHI GGATCC 1 cut(s) 72
BccI CCATC 1 cut(s) 410
BcnI CCSGG 1 cut(s) 408
BfaI CTAG 1 cut(s) 224
BfuAI ACCTGC 1 cut(s) 160
BisI GCNGC 1 cut(s) 375
BlsI GCNGC 1 cut(s) 376
Bme1390I CCNGG 1 cut(s) 408
Bme18I GGWCC 4 cut(s) 81, 276, 410, 461
BmeT110I CYCGRG 1 cut(s) 312
BmgT120I GGNCC 4 cut(s) 81, 276, 410, 461
BmiI GGNNCC 3 cut(s) 74, 277, 411
BmrFI CCNGG 1 cut(s) 408
BpuEI CTTGAG 2 cut(s) 39, 306
BpuMI CCSGG 1 cut(s) 408
BsaJI CCNNGG 1 cut(s) 311
BsaWI WCCGGW 1 cut(s) 463
BseDI CCNNGG 1 cut(s) 311
BseGI GGATG 2 cut(s) 426, 472
BsiHKCI CYCGRG 1 cut(s) 312
BsiSI CCGG 2 cut(s) 407, 464
BslFI GGGAC 3 cut(s) 289, 409, 423
BsmFI GGGAC 3 cut(s) 289, 409, 423
BsoBI CYCGRG 1 cut(s) 312
Bsp1407I TGTACA 1 cut(s) 473
Bsp143I GATC 3 cut(s) 72, 109, 366
BspACI CCGC 3 cut(s) 11, 279, 374
BspLI GGNNCC 3 cut(s) 74, 277, 411
BspMI ACCTGC 1 cut(s) 160
BspPI GGATC 2 cut(s) 67, 80
BsrBI CCGCTC 1 cut(s) 374
BsrGI TGTACA 1 cut(s) 473
BssECI CCNNGG 1 cut(s) 311
BssMI GATC 3 cut(s) 72, 109, 366
Bst4CI ACNGT 2 cut(s) 304, 534
Bst6I CTCTTC 1 cut(s) 357
BstAUI TGTACA 1 cut(s) 473
BstDEI CTNAG 1 cut(s) 204
BstF5I GGATG 2 cut(s) 426, 472
BstKTI GATC 3 cut(s) 75, 112, 369
BstMBI GATC 3 cut(s) 72, 109, 366
BstNSI RCATGY 2 cut(s) 391, 455
BstSCI CCNGG 1 cut(s) 406
BstX2I RGATCY 1 cut(s) 72
BstYI RGATCY 1 cut(s) 72
BtgZI GCGATG 1 cut(s) 116
BtsCI GGATG 2 cut(s) 426, 472
BtsIMutI CAGTG 1 cut(s) 530
BveI ACCTGC 1 cut(s) 160
Cfr13I GGNCC 4 cut(s) 81, 276, 410, 461
CpoI CGGWCCG 1 cut(s) 461
Csp6I GTAC 1 cut(s) 474
CspI CGGWCCG 1 cut(s) 461
CviAII CATG 4 cut(s) 41, 272, 388, 452
CviJI RGCY 6 cut(s) 23, 89, 140, 223, 326, 404
CviKI_1 RGCY 6 cut(s) 23, 89, 140, 223, 326, 404
CviQI GTAC 1 cut(s) 474
DdeI CTNAG 1 cut(s) 204
DpnI GATC 3 cut(s) 74, 111, 368
DpnII GATC 3 cut(s) 72, 109, 366
Eam1104I CTCTTC 1 cut(s) 357
EarI CTCTTC 1 cut(s) 357
Eco47I GGWCC 4 cut(s) 81, 276, 410, 461
Eco57I CTGAAG 2 cut(s) 207, 483
Eco88I CYCGRG 1 cut(s) 312
EcoO109I RGGNCCY 1 cut(s) 410
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 4 cut(s) 44, 275, 391, 455
FalI AAGNNNNNCTT 2 cut(s) 476, 508
FaqI GGGAC 3 cut(s) 289, 409, 423
FatI CATG 4 cut(s) 40, 271, 387, 451
Fnu4HI GCNGC 1 cut(s) 375
FokI GGATG 2 cut(s) 433, 479
Fsp4HI GCNGC 1 cut(s) 375
FspBI CTAG 1 cut(s) 224
GluI GCNGC 1 cut(s) 375
HapII CCGG 2 cut(s) 407, 464
Hin1II CATG 4 cut(s) 44, 275, 391, 455
HindIII AAGCTT 1 cut(s) 87
HinfI GANTC 4 cut(s) 36, 319, 331, 504
HpaII CCGG 2 cut(s) 407, 464
HphI GGTGA 1 cut(s) 328
Hpy166II GTNNAC 1 cut(s) 474
Hpy188I TCNGA 3 cut(s) 358, 371, 461
Hpy188III TCNNGA 6 cut(s) 56, 70, 76, 335, 439, 501
Hpy8I GTNNAC 1 cut(s) 474
Hpy99I CGWCG 1 cut(s) 461
HpyAV CCTTC 5 cut(s) 94, 133, 182, 405, 499
HpyCH4III ACNGT 2 cut(s) 304, 534
HpyCH4V TGCA 3 cut(s) 4, 178, 391
HpyF3I CTNAG 1 cut(s) 204
Hsp92II CATG 4 cut(s) 44, 275, 391, 455
Kzo9I GATC 3 cut(s) 72, 109, 366
LmnI GCTCC 1 cut(s) 409
LpnPI CCDG 9 cut(s) 55, 89, 90, 165, 420, 426, 452, 477, 486
MaeI CTAG 1 cut(s) 224
MaeIII GTNAC 3 cut(s) 45, 229, 316
MalI GATC 3 cut(s) 74, 111, 368
MbiI CCGCTC 1 cut(s) 374
MboI GATC 3 cut(s) 72, 109, 366
MboII GAAGA 4 cut(s) 71, 374, 427, 489
MflI RGATCY 1 cut(s) 72
MluCI AATT 2 cut(s) 160, 523
MlyI GAGTC 2 cut(s) 313, 513
MmeI TCCRAC 1 cut(s) 439
MnlI CCTC 4 cut(s) 35, 72, 256, 321
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 2 cut(s) 168, 341
MspI CCGG 2 cut(s) 407, 464
MspR9I CCNGG 1 cut(s) 408
NciI CCSGG 1 cut(s) 408
NdeII GATC 3 cut(s) 72, 109, 366
NlaIII CATG 4 cut(s) 44, 275, 391, 455
NlaIV GGNNCC 3 cut(s) 74, 277, 411
NmuCI GTSAC 2 cut(s) 229, 316
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 391, 455
PfeI GAWTC 2 cut(s) 36, 331
PfoI TCCNGGA 1 cut(s) 406
PkrI GCNGC 1 cut(s) 376
PleI GAGTC 2 cut(s) 313, 512
PpsI GAGTC 2 cut(s) 313, 512
PpuMI RGGWCCY 1 cut(s) 410
Psp5II RGGWCCY 1 cut(s) 410
PspN4I GGNNCC 3 cut(s) 74, 277, 411
PspPI GGNCC 4 cut(s) 81, 276, 410, 461
PspPPI RGGWCCY 1 cut(s) 410
PsuI RGATCY 1 cut(s) 72
RsaI GTAC 1 cut(s) 475
RsaNI GTAC 1 cut(s) 474
Rsr2I CGGWCCG 1 cut(s) 461
RsrII CGGWCCG 1 cut(s) 461
SaqAI TTAA 2 cut(s) 168, 341
SatI GCNGC 1 cut(s) 375
Sau3AI GATC 3 cut(s) 72, 109, 366
Sau96I GGNCC 4 cut(s) 81, 276, 410, 461
SchI GAGTC 2 cut(s) 313, 513
ScrFI CCNGG 1 cut(s) 408
SetI ASST 9 cut(s) 83, 91, 154, 193, 225, 313, 328, 406, 415
SinI GGWCC 4 cut(s) 81, 276, 410, 461
SmlI CTYRAG 2 cut(s) 54, 321
SmoI CTYRAG 2 cut(s) 54, 321
Sse9I AATT 2 cut(s) 160, 523
SsiI CCGC 3 cut(s) 11, 279, 374
SspMI CTAG 1 cut(s) 224
StyD4I CCNGG 1 cut(s) 406
TaaI ACNGT 2 cut(s) 304, 534
TaqI TCGA 2 cut(s) 34, 157
TasI AATT 2 cut(s) 160, 523
TatI WGTACW 1 cut(s) 473
TauI GCSGC 1 cut(s) 377
TfiI GAWTC 2 cut(s) 36, 331
Tru1I TTAA 2 cut(s) 168, 341
Tru9I TTAA 2 cut(s) 168, 341
TscAI CASTG 1 cut(s) 537
TseFI GTSAC 2 cut(s) 229, 316
Tsp45I GTSAC 2 cut(s) 229, 316
TspDTI ATGAA 4 cut(s) 119, 260, 344, 375
TspGWI ACGGA 1 cut(s) 530
TspRI CASTG 1 cut(s) 537
VpaK11BI GGWCC 4 cut(s) 81, 276, 410, 461
XapI RAATTY 1 cut(s) 160
XceI RCATGY 2 cut(s) 391, 455
XspI CTAG 1 cut(s) 224
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.