Rmu_sc0013801.1_g000003

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013801.1
OG0009678
Physical Location & Seq
Reverse (-)
6062 .. 6559
498 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013801.1_g000003.1.cds

Sequence Viewer

Length: 498 bp
atgaaggagattgagcaagttgttacgggatactacaaggacttgttcacgtctgaaggtgtgcatggaatcgtgttgggtattattttgaatactgtgcaatctcgagtcacaatggagatgaatcaggaattattgactccttatttggatgaggaagtgaagatagctctatttcaaatgcacccatcaaaagtcccgggactggatgatatgtccccatttttctttcagacatattggcatgtggtaggtcctgatgtgtatacagcggtgaagtctttcctctgtttaggtgttttacccactgagatgaatttcacgcacgtgactttaattcccaaggtctcagaatcgaagcaaatgactgatttgggtcctattgcattatgtactgtgttgtatagggtatgctcgaaattattggctaatcagttgaagacagtattaccggatgttgtatctccattgcaaagtgcttttttcccgggaggttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

165

Amino Acids

18.42

Weight (kDa)

5.25

Isoelectric Point (pI)

43.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 266
AciI CCGC 1 cut(s) 272
AcsI RAATTY 1 cut(s) 316
AcuI CTGAAG 1 cut(s) 75
AcvI CACGTG 1 cut(s) 328
AfaI GTAC 1 cut(s) 394
AfiI CCNNNNNNNGG 1 cut(s) 205
AgsI TTSAA 3 cut(s) 91, 179, 439
AjiI CACGTC 1 cut(s) 51
AleI CACNNNNGTG 1 cut(s) 326
AluBI AGCT 1 cut(s) 170
AluI AGCT 1 cut(s) 170
Alw26I GTCTC 1 cut(s) 352
Ama87I CYCGRG 3 cut(s) 105, 199, 487
ApoI RAATTY 1 cut(s) 316
ArsI GACNNNNNNTTYG 2 cut(s) 130, 162
Asp700I GAANNNNTTC 1 cut(s) 281
AspS9I GGNCC 2 cut(s) 254, 377
AsuC2I CCSGG 4 cut(s) 200, 201, 488, 489
AsuHPI GGTGA 1 cut(s) 286
AvaI CYCGRG 3 cut(s) 105, 199, 487
AvaII GGWCC 2 cut(s) 254, 377
BbrPI CACGTG 1 cut(s) 328
BbsI GAAGAC 1 cut(s) 446
BccI CCATC 1 cut(s) 196
BciVI GTATCC 1 cut(s) 23
BcnI CCSGG 4 cut(s) 200, 201, 488, 489
BcoDI GTCTC 1 cut(s) 352
BfuI GTATCC 1 cut(s) 23
Bme1390I CCNGG 4 cut(s) 200, 201, 488, 489
Bme18I GGWCC 2 cut(s) 254, 377
BmeT110I CYCGRG 3 cut(s) 105, 199, 487
BmgBI CACGTC 1 cut(s) 51
BmgT120I GGNCC 2 cut(s) 254, 377
BmiI GGNNCC 1 cut(s) 378
BmrFI CCNGG 4 cut(s) 200, 201, 488, 489
BpiI GAAGAC 1 cut(s) 446
BpuMI CCSGG 4 cut(s) 200, 201, 488, 489
BsaAI YACGTR 1 cut(s) 328
BsaI GGTCTC 1 cut(s) 352
BsaJI CCNNGG 3 cut(s) 199, 342, 487
BsaWI WCCGGW 1 cut(s) 451
Bsc4I CCNNNNNNNGG 1 cut(s) 205
Bse1I ACTGG 1 cut(s) 210
Bse3DI GCAATG 1 cut(s) 467
BseDI CCNNGG 3 cut(s) 199, 342, 487
BseGI GGATG 3 cut(s) 157, 214, 460
BseLI CCNNNNNNNGG 1 cut(s) 205
BseMI GCAATG 1 cut(s) 467
BseMII CTCAG 2 cut(s) 300, 363
BseNI ACTGG 1 cut(s) 210
BsiHKCI CYCGRG 3 cut(s) 105, 199, 487
BsiSI CCGG 3 cut(s) 200, 452, 488
BslFI GGGAC 3 cut(s) 182, 202, 216
BslI CCNNNNNNNGG 1 cut(s) 205
BsmAI GTCTC 1 cut(s) 352
BsmFI GGGAC 3 cut(s) 182, 202, 216
Bso31I GGTCTC 1 cut(s) 352
BsoBI CYCGRG 3 cut(s) 105, 199, 487
BspACI CCGC 1 cut(s) 272
BspCNI CTCAG 2 cut(s) 301, 362
BspLI GGNNCC 1 cut(s) 378
BspTNI GGTCTC 1 cut(s) 352
BsrDI GCAATG 1 cut(s) 467
BsrI ACTGG 1 cut(s) 210
BssECI CCNNGG 3 cut(s) 199, 342, 487
BssNAI GTATAC 1 cut(s) 267
BssT1I CCWWGG 1 cut(s) 342
Bst1107I GTATAC 1 cut(s) 267
Bst4CI ACNGT 3 cut(s) 97, 397, 445
BstBAI YACGTR 1 cut(s) 328
BstDEI CTNAG 2 cut(s) 309, 349
BstF5I GGATG 3 cut(s) 157, 214, 460
BstMAI GTCTC 1 cut(s) 352
BstNSI RCATGY 1 cut(s) 248
BstSCI CCNGG 4 cut(s) 198, 199, 486, 487
BstV2I GAAGAC 1 cut(s) 446
BstZ17I GTATAC 1 cut(s) 267
BsuI GTATCC 1 cut(s) 23
BtrI CACGTC 1 cut(s) 51
BtsCI GGATG 3 cut(s) 157, 214, 460
BtsIMutI CAGTG 1 cut(s) 306
Cfr13I GGNCC 2 cut(s) 254, 377
Cfr9I CCCGGG 2 cut(s) 199, 487
Csp6I GTAC 1 cut(s) 393
CviAII CATG 2 cut(s) 65, 245
CviJI RGCY 2 cut(s) 170, 428
CviKI_1 RGCY 2 cut(s) 170, 428
CviQI GTAC 1 cut(s) 393
DdeI CTNAG 2 cut(s) 309, 349
Eco130I CCWWGG 1 cut(s) 342
Eco31I GGTCTC 1 cut(s) 352
Eco47I GGWCC 2 cut(s) 254, 377
Eco57I CTGAAG 1 cut(s) 75
Eco72I CACGTG 1 cut(s) 328
Eco88I CYCGRG 3 cut(s) 105, 199, 487
EcoO109I RGGNCCY 2 cut(s) 254, 377
EcoT14I CCWWGG 1 cut(s) 342
ErhI CCWWGG 1 cut(s) 342
FaeI CATG 2 cut(s) 68, 248
FaiI YATR 8 cut(s) 66, 215, 238, 246, 267, 391, 405, 412
FaqI GGGAC 3 cut(s) 182, 202, 216
FatI CATG 2 cut(s) 64, 244
FblI GTMKAC 1 cut(s) 266
FokI GGATG 3 cut(s) 164, 221, 467
HapII CCGG 3 cut(s) 200, 452, 488
Hin1II CATG 2 cut(s) 68, 248
HinfI GANTC 5 cut(s) 69, 108, 124, 139, 353
HpaII CCGG 3 cut(s) 200, 452, 488
HphI GGTGA 1 cut(s) 286
Hpy166II GTNNAC 2 cut(s) 48, 267
Hpy188I TCNGA 3 cut(s) 55, 234, 352
Hpy188III TCNNGA 3 cut(s) 105, 128, 257
Hpy8I GTNNAC 2 cut(s) 48, 267
HpyAV CCTTC 1 cut(s) 50
HpyCH4III ACNGT 3 cut(s) 97, 397, 445
HpyCH4IV ACGT 2 cut(s) 50, 327
HpyCH4V TGCA 5 cut(s) 64, 100, 184, 386, 472
HpyF3I CTNAG 2 cut(s) 309, 349
HpySE526I ACGT 2 cut(s) 50, 327
Hsp92II CATG 2 cut(s) 68, 248
LpnPI CCDG 5 cut(s) 113, 191, 213, 270, 465
MaeII ACGT 2 cut(s) 50, 327
MaeIII GTNAC 3 cut(s) 22, 109, 328
MboII GAAGA 2 cut(s) 175, 451
MluCI AATT 4 cut(s) 131, 316, 336, 419
MlyI GAGTC 2 cut(s) 117, 133
MnlI CCTC 3 cut(s) 148, 296, 485
MroXI GAANNNNTTC 1 cut(s) 281
MseI TTAA 1 cut(s) 335
MslI CAYNNNNRTG 2 cut(s) 311, 326
MspA1I CMGCKG 1 cut(s) 272
MspI CCGG 3 cut(s) 200, 452, 488
MspR9I CCNGG 4 cut(s) 200, 201, 488, 489
NciI CCSGG 4 cut(s) 200, 201, 488, 489
NlaIII CATG 2 cut(s) 68, 248
NlaIV GGNNCC 1 cut(s) 378
NmuCI GTSAC 2 cut(s) 109, 328
NspI RCATGY 1 cut(s) 248
OliI CACNNNNGTG 1 cut(s) 326
PaeR7I CTCGAG 1 cut(s) 105
PdmI GAANNNNTTC 1 cut(s) 281
PfeI GAWTC 3 cut(s) 69, 124, 353
PleI GAGTC 2 cut(s) 116, 133
PmaCI CACGTG 1 cut(s) 328
PmlI CACGTG 1 cut(s) 328
PpsI GAGTC 2 cut(s) 116, 133
Ppu21I YACGTR 1 cut(s) 328
PpuMI RGGWCCY 2 cut(s) 254, 377
Psp5II RGGWCCY 2 cut(s) 254, 377
PspCI CACGTG 1 cut(s) 328
PspN4I GGNNCC 1 cut(s) 378
PspPI GGNCC 2 cut(s) 254, 377
PspPPI RGGWCCY 2 cut(s) 254, 377
RsaI GTAC 1 cut(s) 394
RsaNI GTAC 1 cut(s) 393
RseI CAYNNNNRTG 2 cut(s) 311, 326
SaqAI TTAA 1 cut(s) 335
Sau96I GGNCC 2 cut(s) 254, 377
SchI GAGTC 2 cut(s) 117, 133
ScrFI CCNGG 4 cut(s) 200, 201, 488, 489
SetI ASST 8 cut(s) 53, 61, 172, 256, 298, 330, 348, 496
Sfr274I CTCGAG 1 cut(s) 105
SinI GGWCC 2 cut(s) 254, 377
SlaI CTCGAG 1 cut(s) 105
SmaI CCCGGG 2 cut(s) 201, 489
SmiMI CAYNNNNRTG 2 cut(s) 311, 326
SmlI CTYRAG 1 cut(s) 105
SmoI CTYRAG 1 cut(s) 105
Sse9I AATT 4 cut(s) 131, 316, 336, 419
SsiI CCGC 1 cut(s) 272
StyD4I CCNGG 4 cut(s) 198, 199, 486, 487
StyI CCWWGG 1 cut(s) 342
TaaI ACNGT 3 cut(s) 97, 397, 445
TaiI ACGT 2 cut(s) 53, 330
TaqI TCGA 3 cut(s) 106, 356, 416
TasI AATT 4 cut(s) 131, 316, 336, 419
TatI WGTACW 1 cut(s) 392
TfiI GAWTC 3 cut(s) 69, 124, 353
Tru1I TTAA 1 cut(s) 335
Tru9I TTAA 1 cut(s) 335
TscAI CASTG 1 cut(s) 313
TseFI GTSAC 2 cut(s) 109, 328
Tsp45I GTSAC 2 cut(s) 109, 328
TspDTI ATGAA 3 cut(s) 17, 137, 329
TspMI CCCGGG 2 cut(s) 199, 487
TspRI CASTG 1 cut(s) 313
VpaK11BI GGWCC 2 cut(s) 254, 377
XapI RAATTY 1 cut(s) 316
XceI RCATGY 1 cut(s) 248
XhoI CTCGAG 1 cut(s) 105
XmaI CCCGGG 2 cut(s) 199, 487
XmiI GTMKAC 1 cut(s) 266
XmnI GAANNNNTTC 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.