Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0003242

Physical Location & Seq

Genomic Coordinates Forward (+)

21114932 .. 21117323

Gene Structure 2392 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1644 bp

ATGTACTTGCCTTGTGCCCAAAATGAGAAGAAAAACTTGTTTAATCCTTCAAGGGTATTTCTTCCTATTTTGTTGAGTCACACGCCATGTGTACAATTTGTACAACATGTGGCGTATGCCATGTATGCCTTGACACGTCAAAACTTTAATGCATTGGTGAACATTTGTTTTACTGAAATTTCGATGTCTACAGTATATGTTACTGCTAATGATTTGTATGATTATTTTGTAGGAATATCTTCTCAGGTAATGACATTTGAGGTTGGCGCAGTGTTACCAGATACAGTCACTCAAGCACCTGCATACTTTACGAAATGGGCATCAAGTTGCGCGAGCCACGGTTCGGTTGGGTTCGGGTTTGATTTTAATTTTTGTAAATCATTATATATACGTAGGAAAATGCTAGGAATGTGGTGGTTGATGTTAGTACCATTCTTTAAATCATTAAAAATAGAGTCCAATCGTCAATCGACACATCATATATATATATATATATATATGTGTGTGTGTGCGTTTATTTTTACAGTATTCTACATTATACGTGTAGATGGTAAACGTGTAGTCCATGCATTGACTAATCGATCAGTTAAAAATGTATCAGATATAATATATTTGATATCTTCTCTCTTCCTTCTTTATTTTTTATTTTTGTTTTTTGGAAGATACAAGAGGGAAACATTAATTGAGGTTAATGGTCCGACTAGCACCAAAGGAAGGAGTAAAATTTTTAAATTGACTATCACTTTGCTCAAGCTTGACTTGTTTTACAATAACAAAACATTACAACACAAAATTTTCAATAGAATACTATGGGAGGCTACATCAAGGGTTTCACTTAACCGTTCCCCTCATGCAGCCAAAGTGTTAGTGCCAGGAGAATGTTCTTCGCTTCGCAGGCAAAAACCACCATCTCGGTCTGTTTTCTCATTGTTATCATTTTCCTTCCAAGGGATGGGATGTATGGTTGGACTCTCATTTACTATCCCACTTGTAATTTCTTTGAAAACAAAAGAAAACAGAGGACATAATATCAATTTCGTCTTTAAAGAAATTCAAATTGATGATAAAACTAAAAACCGAATCTCAAACATGATATTATATTCCATGCATATTTTATTAATAGAATCTAATTTTAGTTGTCTCACCAATACCAATATCTCGCATTTAAAACTCATTTCAGGAGAAAAGACTTATACTACTAGTACAAGGCCATTAGGCCATCTCAAATGGTTTGTATTAATTTTTAATGTACATAATTACTTTATTGTTATTTTGATAAAAATACTCCAAAATCAATTTGGATTTACAATCTGTATTTTTTGCGGTGGGATTAGTTGTATTTTTCTCTTTCGGTGTGCCTTATTCCCTGCTTTTTTTTTGCAAGTGGTGGGCCACAACTGTGAAATCTCGTCCCCGGTATTTCATTATTTAATTATGTATCTTATTTACATTAATTCTGTATTTATATATTTTATTTCCAGACTTTTCGAGGTCACATTAATGTTTTCGAATGAAAGTCGATTTCATGAACGTGTAGGCAAAAGCTGTTCGCAGATCGAAGCTACAAAGAAGAAGTTACGAGCTGTGAACGATAGCACCCTATTCTTCGTTGATTGGAAGAGATTGATCCCTTCTTTTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

548

Amino Acids

63.33

Weight (kDa)

9.61

Isoelectric Point (pI)

47.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14050
fragaria_vesca	FvH4_2g22480 FvH4_2g22480 FvH4_5g20520
malus_domestica	MD05G1205300.v1.1 MD05G1205400.v1.1 MD10G1192400.v1.1
prunus_persica	Prupe.5G054300_v2.0.a1 Prupe.5G054300_v2.0.a1 Prupe.8G231800_v2.0.a1
pyrus_communis	pycom05g19150 pycom12426g00550 pycom13g23680
rosa_chinensis	RchiOBHm_Chr6g0289431 RchiOBHm_Chr7g0205871 RchiOBHm_Chr7g0205881
rosa_laevigata	RLG00000012303
rosa_multiflora	Rmu_sc0000076.1_g000034 Rmu_sc0001527.1_g000035 Rmu_sc0004084.1_g000004
rosa_roxburghii	Rroxscaffold_3G00251900 Rroxscaffold_7G00179220
rosa_rugosa	Rorug06G0203300 Rorug06G0203400 Rorug07G0093600
rosa_samantha	Rh6AG314600 Rh6BG322100 Rh6CG328300 Rh6DG314000 Rh7AG225300 Rh7BG221200 Rh7CG238900 Rh7CG239300 Rh7CG239400 Rh7DG232000
rosa_wichuraiana	Rw6G027180 Rw7G019430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	307
Acc36I	ACCTGC	1 cut(s)	307
AccB7I	CCANNNNNTGG	1 cut(s)	952
AccI	GTMKAC	1 cut(s)	188
AccII	CGCG	1 cut(s)	332
AciI	CCGC	1 cut(s)	1323
AclWI	GGATC	1 cut(s)	1621
AcsI	RAATTY	4 cut(s)	177, 723, 792, 1050
AfaI	GTAC	6 cut(s)	5, 93, 102, 429, 1204, 1251
AfiI	CCNNNNNNNGG	4 cut(s)	343, 714, 948, 952
AflIII	ACRYGT	5 cut(s)	106, 134, 541, 556, 1531
AgsI	TTSAA	4 cut(s)	51, 799, 1003, 1055
AhlI	ACTAGT	1 cut(s)	1199
AjiI	CACGTC	1 cut(s)	137
AjnI	CCWGG	1 cut(s)	871
AleI	CACNNNNGTG	1 cut(s)	1398
AluBI	AGCT	4 cut(s)	754, 1545, 1562, 1583
AluI	AGCT	4 cut(s)	754, 1545, 1562, 1583
Alw26I	GTCTC	1 cut(s)	1145
AlwI	GGATC	1 cut(s)	1621
AoxI	GGCC	3 cut(s)	1208, 1216, 1390
ApeKI	GCWGC	1 cut(s)	854
ApoI	RAATTY	4 cut(s)	177, 723, 792, 1050
ArsI	GACNNNNNNTTYG	2 cut(s)	727, 759
AseI	ATTAAT	5 cut(s)	680, 1118, 1238, 1452, 1499
Asp700I	GAANNNNTTC	1 cut(s)	238
AspLEI	GCGC	2 cut(s)	269, 332
AspS9I	GGNCC	2 cut(s)	695, 1390
AsuC2I	CCSGG	1 cut(s)	1415
AsuHPI	GGTGA	2 cut(s)	169, 1135
AsuII	TTCGAA	1 cut(s)	1508
AvaII	GGWCC	1 cut(s)	695
BaeGI	GKGCMC	1 cut(s)	19
BbvI	GCAGC	1 cut(s)	866
BccI	CCATC	4 cut(s)	542, 916, 946, 1227
BciT130I	CCWGG	1 cut(s)	873
BcnI	CCSGG	1 cut(s)	1415
BcoDI	GTCTC	1 cut(s)	1145
BcuI	ACTAGT	1 cut(s)	1199
BfaI	CTAG	3 cut(s)	404, 702, 1200
BfmI	CTRYAG	1 cut(s)	189
BfuAI	ACCTGC	1 cut(s)	307
BisI	GCNGC	1 cut(s)	855
BlsI	GCNGC	1 cut(s)	856
Bme1390I	CCNGG	2 cut(s)	873, 1415
Bme18I	GGWCC	1 cut(s)	695
BmgBI	CACGTC	1 cut(s)	137
BmgT120I	GGNCC	2 cut(s)	695, 1390
BmrFI	CCNGG	2 cut(s)	873, 1415
BmsI	GCATC	1 cut(s)	329
Bpu14I	TTCGAA	1 cut(s)	1508
BpuEI	CTTGAG	2 cut(s)	276, 734
BpuMI	CCSGG	1 cut(s)	1415
Bsa29I	ATCGAT	1 cut(s)	580
BsaAI	YACGTR	2 cut(s)	392, 542
BsaJI	CCNNGG	3 cut(s)	337, 946, 1413
Bsc4I	CCNNNNNNNGG	4 cut(s)	343, 714, 948, 952
BseBI	CCWGG	1 cut(s)	873
BseCI	ATCGAT	1 cut(s)	580
BseDI	CCNNGG	3 cut(s)	337, 946, 1413
BseGI	GGATG	2 cut(s)	957, 962
BseLI	CCNNNNNNNGG	4 cut(s)	343, 714, 948, 952
BseMII	CTCAG	1 cut(s)	257
BseSI	GKGCMC	1 cut(s)	19
BseXI	GCAGC	1 cut(s)	866
Bsh1236I	CGCG	1 cut(s)	332
BshFI	GGCC	3 cut(s)	1210, 1218, 1392
BshVI	ATCGAT	1 cut(s)	580
BsiSI	CCGG	1 cut(s)	1415
BslFI	GGGAC	1 cut(s)	1396
BslI	CCNNNNNNNGG	4 cut(s)	343, 714, 948, 952
BsmAI	GTCTC	1 cut(s)	1145
BsmFI	GGGAC	1 cut(s)	1396
BsnI	GGCC	3 cut(s)	1210, 1218, 1392
Bsp119I	TTCGAA	1 cut(s)	1508
Bsp1286I	GDGCHC	1 cut(s)	19
Bsp1407I	TGTACA	3 cut(s)	91, 100, 1249
Bsp143I	GATC	3 cut(s)	581, 1554, 1626
BspACI	CCGC	1 cut(s)	1323
BspANI	GGCC	3 cut(s)	1210, 1218, 1392
BspCNI	CTCAG	1 cut(s)	256
BspDI	ATCGAT	1 cut(s)	580
BspFNI	CGCG	1 cut(s)	332
BspHI	TCATGA	1 cut(s)	1525
BspMI	ACCTGC	1 cut(s)	307
BspPI	GGATC	1 cut(s)	1621
BspT104I	TTCGAA	1 cut(s)	1508
BsrGI	TGTACA	3 cut(s)	91, 100, 1249
BssECI	CCNNGG	3 cut(s)	337, 946, 1413
BssMI	GATC	3 cut(s)	581, 1554, 1626
BssT1I	CCWWGG	1 cut(s)	946
Bst2UI	CCWGG	1 cut(s)	873
Bst4CI	ACNGT	6 cut(s)	193, 286, 341, 526, 842, 1400
Bst6I	CTCTTC	2 cut(s)	632, 1613
BstAUI	TGTACA	3 cut(s)	91, 100, 1249
BstBAI	YACGTR	2 cut(s)	392, 542
BstBI	TTCGAA	1 cut(s)	1508
BstC8I	GCNNGC	2 cut(s)	334, 896
BstDEI	CTNAG	1 cut(s)	243
BstDSI	CCRYGG	1 cut(s)	337
BstF5I	GGATG	2 cut(s)	957, 962
BstFNI	CGCG	1 cut(s)	332
BstHHI	GCGC	2 cut(s)	269, 332
BstKTI	GATC	3 cut(s)	584, 1557, 1629
BstMAI	GTCTC	1 cut(s)	1145
BstMBI	GATC	3 cut(s)	581, 1554, 1626
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 895
BstNI	CCWGG	1 cut(s)	873
BstNSI	RCATGY	1 cut(s)	110
BstSCI	CCNGG	2 cut(s)	871, 1413
BstSFI	CTRYAG	1 cut(s)	189
BstSLI	GKGCMC	1 cut(s)	19
BstSNI	TACGTA	1 cut(s)	392
BstUI	CGCG	1 cut(s)	332
BstV1I	GCAGC	1 cut(s)	866
Bsu15I	ATCGAT	1 cut(s)	580
BsuRI	GGCC	3 cut(s)	1210, 1218, 1392
BsuTUI	ATCGAT	1 cut(s)	580
BtgI	CCRYGG	1 cut(s)	337
BtrI	CACGTC	1 cut(s)	137
BtsCI	GGATG	2 cut(s)	957, 962
BtsI	GCAGTG	1 cut(s)	276
BtsIMutI	CAGTG	1 cut(s)	276
BveI	ACCTGC	1 cut(s)	307
Cac8I	GCNNGC	2 cut(s)	334, 896
CciI	TCATGA	1 cut(s)	1525
CfoI	GCGC	2 cut(s)	269, 332
Cfr13I	GGNCC	2 cut(s)	695, 1390
ClaI	ATCGAT	1 cut(s)	580
Csp6I	GTAC	6 cut(s)	4, 92, 101, 428, 1203, 1250
CviAII	CATG	8 cut(s)	87, 107, 121, 566, 851, 1090, 1105, 1526
CviQI	GTAC	6 cut(s)	4, 92, 101, 428, 1203, 1250
DdeI	CTNAG	1 cut(s)	243
DpnI	GATC	3 cut(s)	583, 1556, 1628
DpnII	GATC	3 cut(s)	581, 1554, 1626
DraI	TTTAAA	4 cut(s)	439, 730, 1045, 1167
Eam1104I	CTCTTC	2 cut(s)	632, 1613
EarI	CTCTTC	2 cut(s)	632, 1613
Eco105I	TACGTA	1 cut(s)	392
Eco130I	CCWWGG	1 cut(s)	946
Eco32I	GATATC	1 cut(s)	618
Eco47I	GGWCC	1 cut(s)	695
EcoRII	CCWGG	1 cut(s)	871
EcoRV	GATATC	1 cut(s)	618
EcoT14I	CCWWGG	1 cut(s)	946
EcoT22I	ATGCAT	3 cut(s)	154, 571, 1110
ErhI	CCWWGG	1 cut(s)	946
FaeI	CATG	8 cut(s)	90, 110, 124, 569, 854, 1093, 1108, 1529
FalI	AAGNNNNNCTT	4 cut(s)	20, 52, 743, 775
FaqI	GGGAC	1 cut(s)	1396
FatI	CATG	8 cut(s)	86, 106, 120, 565, 850, 1089, 1104, 1525
FblI	GTMKAC	1 cut(s)	188
Fnu4HI	GCNGC	1 cut(s)	855
FokI	GGATG	2 cut(s)	964, 969
Fsp4HI	GCNGC	1 cut(s)	855
FspBI	CTAG	3 cut(s)	404, 702, 1200
GlaI	GCGC	2 cut(s)	268, 331
GluI	GCNGC	1 cut(s)	855
HaeIII	GGCC	3 cut(s)	1210, 1218, 1392
HapII	CCGG	1 cut(s)	1415
HhaI	GCGC	2 cut(s)	269, 332
Hin1II	CATG	8 cut(s)	90, 110, 124, 569, 854, 1093, 1108, 1529
Hin6I	GCGC	2 cut(s)	267, 330
HinP1I	GCGC	2 cut(s)	267, 330
HindIII	AAGCTT	1 cut(s)	752
HinfI	GANTC	5 cut(s)	76, 455, 969, 1080, 1124
HpaII	CCGG	1 cut(s)	1415
HphI	GGTGA	2 cut(s)	169, 1135
Hpy166II	GTNNAC	5 cut(s)	92, 160, 189, 554, 1588
Hpy188I	TCNGA	2 cut(s)	601, 699
Hpy188III	TCNNGA	3 cut(s)	1179, 1479, 1526
Hpy8I	GTNNAC	5 cut(s)	92, 160, 189, 554, 1588
HpyAV	CCTTC	5 cut(s)	57, 641, 708, 952, 1641
HpyCH4III	ACNGT	6 cut(s)	193, 286, 341, 526, 842, 1400
HpyCH4IV	ACGT	5 cut(s)	136, 391, 541, 556, 1531
HpyCH4V	TGCA	6 cut(s)	152, 302, 569, 854, 1108, 1381
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 895
HpyF3I	CTNAG	1 cut(s)	243
HpySE526I	ACGT	5 cut(s)	136, 391, 541, 556, 1531
Hsp92II	CATG	8 cut(s)	90, 110, 124, 569, 854, 1093, 1108, 1529
HspAI	GCGC	2 cut(s)	267, 330
Kzo9I	GATC	3 cut(s)	581, 1554, 1626
Lsp1109I	GCAGC	1 cut(s)	866
LweI	GCATC	1 cut(s)	329
MaeI	CTAG	3 cut(s)	404, 702, 1200
MaeII	ACGT	5 cut(s)	136, 391, 541, 556, 1531
MaeIII	GTNAC	6 cut(s)	77, 199, 273, 286, 1492, 1575
MalI	GATC	3 cut(s)	583, 1556, 1628
MboI	GATC	3 cut(s)	581, 1554, 1626
MhlI	GDGCHC	1 cut(s)	19
MlyI	GAGTC	3 cut(s)	85, 464, 963
MmeI	TCCRAC	2 cut(s)	722, 946
MnlI	CCTC	7 cut(s)	253, 663, 679, 808, 858, 1013, 1483
Mph1103I	ATGCAT	3 cut(s)	154, 571, 1110
MroXI	GAANNNNTTC	1 cut(s)	238
MslI	CAYNNNNRTG	3 cut(s)	1398, 1499, 1530
MspI	CCGG	1 cut(s)	1415
MspR9I	CCNGG	2 cut(s)	873, 1415
MvaI	CCWGG	1 cut(s)	873
MvnI	CGCG	1 cut(s)	332
MwoI	GCNNNNNNNGC	2 cut(s)	125, 895
NciI	CCSGG	1 cut(s)	1415
NdeII	GATC	3 cut(s)	581, 1554, 1626
NlaIII	CATG	8 cut(s)	90, 110, 124, 569, 854, 1093, 1108, 1529
NmuCI	GTSAC	3 cut(s)	77, 286, 1492
NsiI	ATGCAT	3 cut(s)	154, 571, 1110
NspI	RCATGY	1 cut(s)	110
NspV	TTCGAA	1 cut(s)	1508
OliI	CACNNNNGTG	1 cut(s)	1398
PagI	TCATGA	1 cut(s)	1525
PaqCI	CACCTGC	1 cut(s)	307
PciI	ACATGT	1 cut(s)	106
PdmI	GAANNNNTTC	1 cut(s)	238
PfeI	GAWTC	2 cut(s)	1080, 1124
PflMI	CCANNNNNTGG	1 cut(s)	952
PkrI	GCNGC	1 cut(s)	856
PleI	GAGTC	3 cut(s)	84, 463, 963
PpsI	GAGTC	3 cut(s)	84, 463, 963
Ppu21I	YACGTR	2 cut(s)	392, 542
PscI	ACATGT	1 cut(s)	106
PshBI	ATTAAT	5 cut(s)	680, 1118, 1238, 1452, 1499
Psp6I	CCWGG	1 cut(s)	871
PspGI	CCWGG	1 cut(s)	871
PspPI	GGNCC	2 cut(s)	695, 1390
RsaI	GTAC	6 cut(s)	5, 93, 102, 429, 1204, 1251
RsaNI	GTAC	6 cut(s)	4, 92, 101, 428, 1203, 1250
RseI	CAYNNNNRTG	3 cut(s)	1398, 1499, 1530
SatI	GCNGC	1 cut(s)	855
Sau3AI	GATC	3 cut(s)	581, 1554, 1626
Sau96I	GGNCC	2 cut(s)	695, 1390
SchI	GAGTC	3 cut(s)	85, 464, 963
ScrFI	CCNGG	2 cut(s)	873, 1415
SduI	GDGCHC	1 cut(s)	19
SfaNI	GCATC	1 cut(s)	329
SfcI	CTRYAG	1 cut(s)	189
SfuI	TTCGAA	1 cut(s)	1508
SinI	GGWCC	1 cut(s)	695
SmiMI	CAYNNNNRTG	3 cut(s)	1398, 1499, 1530
SmlI	CTYRAG	2 cut(s)	291, 749
SmoI	CTYRAG	2 cut(s)	291, 749
SnaBI	TACGTA	1 cut(s)	392
SpeI	ACTAGT	1 cut(s)	1199
SsiI	CCGC	1 cut(s)	1323
SspMI	CTAG	3 cut(s)	404, 702, 1200
StyD4I	CCNGG	2 cut(s)	871, 1413
StyI	CCWWGG	1 cut(s)	946
TaaI	ACNGT	6 cut(s)	193, 286, 341, 526, 842, 1400
TaiI	ACGT	5 cut(s)	139, 394, 544, 559, 1534
TaqI	TCGA	7 cut(s)	182, 470, 580, 1488, 1508, 1519, 1557
TaqII	GACCGA	1 cut(s)	903
TatI	WGTACW	5 cut(s)	3, 91, 100, 1202, 1249
TfiI	GAWTC	2 cut(s)	1080, 1124
TscAI	CASTG	1 cut(s)	276
TseFI	GTSAC	3 cut(s)	77, 286, 1492
TseI	GCWGC	1 cut(s)	854
Tsp45I	GTSAC	3 cut(s)	77, 286, 1492
TspDTI	ATGAA	4 cut(s)	1412, 1514, 1527, 1542
TspRI	CASTG	1 cut(s)	276
Van91I	CCANNNNNTGG	1 cut(s)	952
VpaK11BI	GGWCC	1 cut(s)	695
VspI	ATTAAT	5 cut(s)	680, 1118, 1238, 1452, 1499
XapI	RAATTY	4 cut(s)	177, 723, 792, 1050
XceI	RCATGY	1 cut(s)	110
XcmI	CCANNNNNNNNNTGG	2 cut(s)	344, 1295
XmiI	GTMKAC	1 cut(s)	188
XmnI	GAANNNNTTC	1 cut(s)	238
XspI	CTAG	3 cut(s)	404, 702, 1200
Zsp2I	ATGCAT	3 cut(s)	154, 571, 1110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.