Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0002492

Physical Location & Seq

Genomic Coordinates Reverse (-)

6534241 .. 6535394

Gene Structure 1154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGCGAATGATGATCAGAGCTTTCTCTTGTACTTCATTATTGGTACCTACTTTGGGCCCGATCTTAAAGGTGAGCGGCCGCCAAAGTCAGTGTTGCAGATAAGAGCTGAGCGACTTCTACCATATACTATTGAGCAACTAGGTGTCTCCCACCTGGAACTGGCGGAGGTAGAGCAGTTCAATAACAAAGATGATATCTTTGAGAACATTGTATTTATTCATAACCCAGAAATATATTATGTTAAGCCAAAGGATATTGAACAATTTAAGAGGCTTACTGGGCTGGAGGATTTTCTTCTGGACAGAGATGCTGCAAGGCTGCATACTGTTCATGATGGAAGTTTGAAACCTATGCATGTTAAGGCACCTATCAGTACTGTTCCAGATAGTTGTACTCCTATGCTGCATTGTTATAGATCCCCGCAGATGAATAAAAATGACTCTGGTCCTGTGGAGAAACTTGATCGTGTGAGACCAACAATAGGGCTCATTGACATTGGAGAATGTGACGACTCCTACCTGTTTCGTGTATCTCTTCCTGGAGTGAGAAGAGATGAAAGTAAGTTTCTCTATACAATCACCTGTATTGGCCAAGTATTGATAAGAGGAATGACAGTAACGGGCGAGAAGATGGTCTACAGGTACTCTCAGATGTTTGAAATGCAAACAAAGAATCTTTGCCCTTCAGGGCAGTTTTCTATCTCATTTCAGCTACCTGGTCCAGTTAATCCTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0034641 GO:0035510 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0043966 GO:0043971 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044728 GO:0046483 GO:0051276 GO:0070988 GO:0071704 GO:0071840 GO:0080111 GO:0090304 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSP20

Protein Analysis

246

Amino Acids

28.04

Weight (kDa)

5.71

Isoelectric Point (pI)

45.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54840 AT1G54840
fragaria_vesca	FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480
malus_domestica	MD12G1082200.v1.1
prunus_persica	Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1
pyrus_communis	pycom12g06800 pycom14g06590
rosa_chinensis	RchiOBHm_Chr3g0483521
rosa_laevigata	RLG00000023268 RLG00000023274
rosa_multiflora	Rmu_co8172902.1_g000001 Rmu_sc0038548.1_g000001 Rmu_sc0038549.1_g000001
rosa_roxburghii	Rroxscaffold_6G00398240
rosa_rugosa	Rorug03G0206400 Rorug03G0206500 Rorug03G0206600 Rorug03G0206700
rosa_samantha	Rh3AG254800 Rh3BG292100 Rh3CG289300 Rh3DG285200 Rh3DG285300 Rh3DG285400
rosa_wichuraiana	Rw3G023040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	44
AccB1I	GGYRCC	2 cut(s)	44, 364
AccBSI	CCGCTC	1 cut(s)	76
AccI	GTMKAC	1 cut(s)	636
AciI	CCGC	4 cut(s)	76, 80, 164, 422
AclWI	GGATC	1 cut(s)	411
AcoI	YGGCCR	2 cut(s)	77, 589
AcuI	CTGAAG	1 cut(s)	669
AfaI	GTAC	5 cut(s)	32, 46, 376, 394, 644
AfiI	CCNNNNNNNGG	3 cut(s)	54, 160, 482
AgsI	TTSAA	4 cut(s)	181, 260, 346, 659
AjnI	CCWGG	3 cut(s)	153, 538, 715
AluBI	AGCT	3 cut(s)	21, 107, 712
AluI	AGCT	3 cut(s)	21, 107, 712
Alw26I	GTCTC	2 cut(s)	151, 466
AlwI	GGATC	1 cut(s)	411
AoxI	GGCC	3 cut(s)	56, 77, 589
ApaI	GGGCCC	1 cut(s)	60
ApeKI	GCWGC	3 cut(s)	311, 319, 403
Asp718I	GGTACC	1 cut(s)	44
AspS9I	GGNCC	4 cut(s)	56, 57, 446, 719
AsuHPI	GGTGA	2 cut(s)	83, 571
AvaII	GGWCC	2 cut(s)	446, 719
BaeGI	GKGCMC	1 cut(s)	60
BalI	TGGCCA	1 cut(s)	591
BanI	GGYRCC	2 cut(s)	44, 364
BanII	GRGCYC	2 cut(s)	60, 489
BarI	GAAGNNNNNNTAC	2 cut(s)	620, 652
BbvI	GCAGC	3 cut(s)	298, 306, 390
BccI	CCATC	2 cut(s)	329, 625
BciT130I	CCWGG	3 cut(s)	155, 540, 717
BclI	TGATCA	1 cut(s)	13
BcoDI	GTCTC	2 cut(s)	151, 466
BfaI	CTAG	1 cut(s)	140
BfmI	CTRYAG	1 cut(s)	637
BisI	GCNGC	5 cut(s)	77, 80, 312, 320, 404
BlpI	GCTNAGC	1 cut(s)	108
BlsI	GCNGC	5 cut(s)	78, 81, 313, 321, 405
BmcAI	AGTACT	1 cut(s)	376
Bme1390I	CCNGG	3 cut(s)	155, 540, 717
Bme18I	GGWCC	2 cut(s)	446, 719
BmgT120I	GGNCC	4 cut(s)	56, 57, 446, 719
BmiI	GGNNCC	3 cut(s)	46, 58, 366
BmrFI	CCNGG	3 cut(s)	155, 540, 717
BmrI	ACTGGG	1 cut(s)	288
BmsI	GCATC	1 cut(s)	298
BmuI	ACTGGG	1 cut(s)	288
BoxI	GACNNNNGTC	1 cut(s)	444
BpmI	CTGGAG	2 cut(s)	305, 561
Bpu1102I	GCTNAGC	1 cut(s)	108
BsaI	GGTCTC	1 cut(s)	466
Bsc4I	CCNNNNNNNGG	3 cut(s)	54, 160, 482
Bse1I	ACTGG	3 cut(s)	165, 283, 722
BseBI	CCWGG	3 cut(s)	155, 540, 717
BseLI	CCNNNNNNNGG	3 cut(s)	54, 160, 482
BseMII	CTCAG	2 cut(s)	99, 662
BseNI	ACTGG	3 cut(s)	165, 283, 722
BseSI	GKGCMC	1 cut(s)	60
BseX3I	CGGCCG	1 cut(s)	77
BseXI	GCAGC	3 cut(s)	298, 306, 390
Bsh1285I	CGRYCG	1 cut(s)	80
BshFI	GGCC	3 cut(s)	58, 79, 591
BshNI	GGYRCC	2 cut(s)	44, 364
BsiEI	CGRYCG	1 cut(s)	80
BslI	CCNNNNNNNGG	3 cut(s)	54, 160, 482
BsmAI	GTCTC	2 cut(s)	151, 466
BsnI	GGCC	3 cut(s)	58, 79, 591
Bso31I	GGTCTC	1 cut(s)	466
Bsp120I	GGGCCC	1 cut(s)	56
Bsp1286I	GDGCHC	2 cut(s)	60, 489
Bsp143I	GATC	4 cut(s)	13, 61, 416, 463
Bsp1720I	GCTNAGC	1 cut(s)	108
BspACI	CCGC	4 cut(s)	76, 80, 164, 422
BspANI	GGCC	3 cut(s)	58, 79, 591
BspCNI	CTCAG	2 cut(s)	100, 661
BspHI	TCATGA	1 cut(s)	331
BspLI	GGNNCC	3 cut(s)	46, 58, 366
BspPI	GGATC	1 cut(s)	411
BspT107I	GGYRCC	2 cut(s)	44, 364
BspTNI	GGTCTC	1 cut(s)	466
BsrBI	CCGCTC	1 cut(s)	76
BsrI	ACTGG	3 cut(s)	165, 283, 722
BssMI	GATC	4 cut(s)	13, 61, 416, 463
Bst2UI	CCWGG	3 cut(s)	155, 540, 717
Bst4CI	ACNGT	3 cut(s)	328, 379, 616
Bst6I	CTCTTC	2 cut(s)	540, 544
BstDEI	CTNAG	3 cut(s)	108, 648, 732
BstKTI	GATC	4 cut(s)	16, 64, 419, 466
BstMAI	GTCTC	2 cut(s)	151, 466
BstMBI	GATC	4 cut(s)	13, 61, 416, 463
BstMCI	CGRYCG	1 cut(s)	80
BstMWI	GCNNNNNNNGC	1 cut(s)	280
BstNI	CCWGG	3 cut(s)	155, 540, 717
BstNSI	RCATGY	1 cut(s)	359
BstPAI	GACNNNNGTC	1 cut(s)	444
BstSCI	CCNGG	3 cut(s)	153, 538, 715
BstSFI	CTRYAG	1 cut(s)	637
BstSLI	GKGCMC	1 cut(s)	60
BstV1I	GCAGC	3 cut(s)	298, 306, 390
BstX2I	RGATCY	1 cut(s)	416
BstYI	RGATCY	1 cut(s)	416
BstZI	CGGCCG	1 cut(s)	77
BsuRI	GGCC	3 cut(s)	58, 79, 591
BtsIMutI	CAGTG	1 cut(s)	96
CciI	TCATGA	1 cut(s)	331
CciNI	GCGGCCGC	1 cut(s)	77
Cfr13I	GGNCC	4 cut(s)	56, 57, 446, 719
CsiI	ACCWGGT	1 cut(s)	715
Csp6I	GTAC	5 cut(s)	31, 45, 375, 393, 643
CviAII	CATG	2 cut(s)	332, 356
CviQI	GTAC	5 cut(s)	31, 45, 375, 393, 643
DdeI	CTNAG	3 cut(s)	108, 648, 732
DpnI	GATC	4 cut(s)	15, 63, 418, 465
DpnII	GATC	4 cut(s)	13, 61, 416, 463
EaeI	YGGCCR	2 cut(s)	77, 589
EagI	CGGCCG	1 cut(s)	77
Eam1104I	CTCTTC	2 cut(s)	540, 544
EarI	CTCTTC	2 cut(s)	540, 544
EciI	GGCGGA	1 cut(s)	179
EclXI	CGGCCG	1 cut(s)	77
Eco24I	GRGCYC	2 cut(s)	60, 489
Eco31I	GGTCTC	1 cut(s)	466
Eco32I	GATATC	1 cut(s)	196
Eco47I	GGWCC	2 cut(s)	446, 719
Eco52I	CGGCCG	1 cut(s)	77
Eco57I	CTGAAG	1 cut(s)	669
EcoRII	CCWGG	3 cut(s)	153, 538, 715
EcoRV	GATATC	1 cut(s)	196
EcoT22I	ATGCAT	1 cut(s)	357
EcoT38I	GRGCYC	2 cut(s)	60, 489
FaeI	CATG	2 cut(s)	335, 359
FatI	CATG	2 cut(s)	331, 355
FauI	CCCGC	1 cut(s)	429
FbaI	TGATCA	1 cut(s)	13
FblI	GTMKAC	1 cut(s)	636
Fnu4HI	GCNGC	5 cut(s)	77, 80, 312, 320, 404
FriOI	GRGCYC	2 cut(s)	60, 489
Fsp4HI	GCNGC	5 cut(s)	77, 80, 312, 320, 404
FspBI	CTAG	1 cut(s)	140
GluI	GCNGC	5 cut(s)	77, 80, 312, 320, 404
GsuI	CTGGAG	2 cut(s)	305, 561
HaeIII	GGCC	3 cut(s)	58, 79, 591
Hin1II	CATG	2 cut(s)	335, 359
HinfI	GANTC	3 cut(s)	440, 512, 673
HphI	GGTGA	2 cut(s)	83, 571
Hpy166II	GTNNAC	1 cut(s)	637
Hpy188I	TCNGA	2 cut(s)	18, 651
Hpy188III	TCNNGA	3 cut(s)	299, 332, 383
Hpy8I	GTNNAC	1 cut(s)	637
HpyAV	CCTTC	1 cut(s)	693
HpyCH4III	ACNGT	3 cut(s)	328, 379, 616
HpyCH4V	TGCA	6 cut(s)	97, 314, 322, 355, 406, 664
HpyF10VI	GCNNNNNNNGC	1 cut(s)	280
HpyF3I	CTNAG	3 cut(s)	108, 648, 732
Hsp92II	CATG	2 cut(s)	335, 359
KpnI	GGTACC	1 cut(s)	48
Ksp22I	TGATCA	1 cut(s)	13
Kzo9I	GATC	4 cut(s)	13, 61, 416, 463
Lsp1109I	GCAGC	3 cut(s)	298, 306, 390
LweI	GCATC	1 cut(s)	298
MabI	ACCWGGT	1 cut(s)	715
MaeI	CTAG	1 cut(s)	140
MaeIII	GTNAC	2 cut(s)	506, 616
MalI	GATC	4 cut(s)	15, 63, 418, 465
MbiI	CCGCTC	1 cut(s)	76
MboI	GATC	4 cut(s)	13, 61, 416, 463
MboII	GAAGA	4 cut(s)	287, 527, 561, 640
MflI	RGATCY	1 cut(s)	416
MhlI	GDGCHC	2 cut(s)	60, 489
MlsI	TGGCCA	1 cut(s)	591
MluCI	AATT	1 cut(s)	263
MluNI	TGGCCA	1 cut(s)	591
MlyI	GAGTC	2 cut(s)	434, 506
MnlI	CCTC	4 cut(s)	160, 264, 280, 599
Mox20I	TGGCCA	1 cut(s)	591
Mph1103I	ATGCAT	1 cut(s)	357
MscI	TGGCCA	1 cut(s)	591
MseI	TTAA	5 cut(s)	66, 243, 267, 360, 726
Msp20I	TGGCCA	1 cut(s)	591
MspR9I	CCNGG	3 cut(s)	155, 540, 717
MvaI	CCWGG	3 cut(s)	155, 540, 717
MwoI	GCNNNNNNNGC	1 cut(s)	280
NdeII	GATC	4 cut(s)	13, 61, 416, 463
NlaIII	CATG	2 cut(s)	335, 359
NlaIV	GGNNCC	3 cut(s)	46, 58, 366
NmuCI	GTSAC	1 cut(s)	506
NotI	GCGGCCGC	1 cut(s)	77
NsiI	ATGCAT	1 cut(s)	357
NspI	RCATGY	1 cut(s)	359
PagI	TCATGA	1 cut(s)	331
PfeI	GAWTC	1 cut(s)	673
PfoI	TCCNGGA	1 cut(s)	538
PkrI	GCNGC	5 cut(s)	78, 81, 313, 321, 405
PleI	GAGTC	2 cut(s)	434, 506
PpsI	GAGTC	2 cut(s)	434, 506
PshAI	GACNNNNGTC	1 cut(s)	444
Psp6I	CCWGG	3 cut(s)	153, 538, 715
PspGI	CCWGG	3 cut(s)	153, 538, 715
PspN4I	GGNNCC	3 cut(s)	46, 58, 366
PspOMI	GGGCCC	1 cut(s)	56
PspPI	GGNCC	4 cut(s)	56, 57, 446, 719
PsuI	RGATCY	1 cut(s)	416
RsaI	GTAC	5 cut(s)	32, 46, 376, 394, 644
RsaNI	GTAC	5 cut(s)	31, 45, 375, 393, 643
SaqAI	TTAA	5 cut(s)	66, 243, 267, 360, 726
SatI	GCNGC	5 cut(s)	77, 80, 312, 320, 404
Sau3AI	GATC	4 cut(s)	13, 61, 416, 463
Sau96I	GGNCC	4 cut(s)	56, 57, 446, 719
ScaI	AGTACT	1 cut(s)	376
SchI	GAGTC	2 cut(s)	434, 506
ScrFI	CCNGG	3 cut(s)	155, 540, 717
SduI	GDGCHC	2 cut(s)	60, 489
SexAI	ACCWGGT	1 cut(s)	715
SfaNI	GCATC	1 cut(s)	298
SfcI	CTRYAG	1 cut(s)	637
SinI	GGWCC	2 cut(s)	446, 719
Sse9I	AATT	1 cut(s)	263
SsiI	CCGC	4 cut(s)	76, 80, 164, 422
SspMI	CTAG	1 cut(s)	140
StyD4I	CCNGG	3 cut(s)	153, 538, 715
TaaI	ACNGT	3 cut(s)	328, 379, 616
TasI	AATT	1 cut(s)	263
TatI	WGTACW	3 cut(s)	30, 374, 392
TauI	GCSGC	2 cut(s)	79, 82
TfiI	GAWTC	1 cut(s)	673
Tru1I	TTAA	5 cut(s)	66, 243, 267, 360, 726
Tru9I	TTAA	5 cut(s)	66, 243, 267, 360, 726
TscAI	CASTG	1 cut(s)	96
TseFI	GTSAC	1 cut(s)	506
TseI	GCWGC	3 cut(s)	311, 319, 403
Tsp45I	GTSAC	1 cut(s)	506
TspDTI	ATGAA	5 cut(s)	25, 209, 320, 443, 570
TspRI	CASTG	1 cut(s)	96
VpaK11BI	GGWCC	2 cut(s)	446, 719
XceI	RCATGY	1 cut(s)	359
XmiI	GTMKAC	1 cut(s)	636
XspI	CTAG	1 cut(s)	140
ZrmI	AGTACT	1 cut(s)	376
Zsp2I	ATGCAT	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.