Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005722

Physical Location & Seq

Genomic Coordinates Forward (+)

2168529 .. 2170436

Gene Structure 1908 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGTCGGAGACGAAGGCCGAGAGCAAGAACAAAAACCCTAAGAAGGTCAATCTCTCAGATCACAACTCCATCAAGCATCTCCTCGACGAGTCCGTCTCTGAGATTGTTAAGAGTCGCGGGTATGTGGAGAATACGAGGCTGAGCAACTTGAAGTTGTTGATTGGAACCGTTGTAATAATCATTGCTCTGTTTGCTCAGTTCTACAACAAGAAATTTCCGGAAAACCGAGATTTCCTGCTTGGATGCATTTATGTCATCGTTAATGGGATACTACAGGTGGTCTCATACACAAAGGATAAAGATGCAATCTTGTTCACTCATCCTCCTGCGGGAGCCTTTAGCACTGGGCTGGTGGTGTCTTCCAAGTTACCAAGATTTTCTGACTTGTACACGCTTACAGTAGCCAGTGCAGATCCGGAATCAATATCTGCAAACAAACCGGTGGGATTCACAAAGAGCGTTACTCAATGGTTTACTAAGGATGGATTGTTGGTGGAAGGCCTTTTCTGGAAGGAAGTAGACGGACTGATAAACGATTACGCAAAAGAACCTAAGAAGAGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005787 GO:0005789 GO:0006465 GO:0006508 GO:0006518 GO:0006605 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016485 GO:0019538 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034641 GO:0042175 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051604 GO:0051641 GO:0051649 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072599 GO:0098796 GO:0098827 GO:1901564 GO:1902494 GO:1905368

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SPC25

Protein Analysis

189

Amino Acids

20.93

Weight (kDa)

9.16

Isoelectric Point (pI)

26.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPC25	PF06703	24 - 178	1e-34	Microsomal signal peptidase 25 kDa subunit (SPC25)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0005722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39960 AT4G04200
fragaria_vesca	FvH4_7g24030
malus_domestica	MD07G1214300.v1.1 MD08G1058200.v1.1 MD15G1038100.v1.1
prunus_persica	Prupe.1G392100_v2.0.a1 Prupe.2G246200_v2.0.a1
pyrus_communis	pycom08g04830 pycom15g03530
rosa_chinensis	RchiOBHm_Chr1g0369411 RchiOBHm_Chr6g0299621
rosa_laevigata	RLG00000011404 RLG00000027132
rosa_multiflora	Rmu_sc0002895.1_g000003
rosa_roxburghii	Rroxscaffold_4G00287670 Rroxscaffold_7G00168500
rosa_rugosa	Rorug01G0349900 Rorug06G0291100
rosa_samantha	Rh1AG357500 Rh1BG321600 Rh1CG335400 Rh1DG352200 Rh6AG401900 Rh6CG415900 Rh6DG403100
rosa_wichuraiana	Rw1G031550 Rw6G035170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	92
AccI	GTMKAC	1 cut(s)	519
AccII	CGCG	1 cut(s)	117
AccIII	TCCGGA	2 cut(s)	217, 415
AciI	CCGC	2 cut(s)	117, 329
AclWI	GGATC	1 cut(s)	407
AcsI	RAATTY	1 cut(s)	212
AfaI	GTAC	1 cut(s)	389
AfiI	CCNNNNNNNGG	2 cut(s)	43, 329
AgeI	ACCGGT	1 cut(s)	439
AgsI	TTSAA	1 cut(s)	151
Alw26I	GTCTC	3 cut(s)	2, 100, 286
AlwI	GGATC	1 cut(s)	407
Aor13HI	TCCGGA	2 cut(s)	217, 415
AoxI	GGCC	2 cut(s)	15, 499
ApoI	RAATTY	1 cut(s)	212
AsiGI	ACCGGT	1 cut(s)	439
BbsI	GAAGAC	1 cut(s)	351
BccI	CCATC	2 cut(s)	77, 476
BciVI	GTATCC	1 cut(s)	261
BcoDI	GTCTC	3 cut(s)	2, 100, 286
BfmI	CTRYAG	1 cut(s)	272
BfuI	GTATCC	1 cut(s)	261
BlpI	GCTNAGC	1 cut(s)	140
BmiI	GGNNCC	2 cut(s)	166, 334
BmrI	ACTGGG	1 cut(s)	354
BmsI	GCATC	3 cut(s)	85, 233, 292
BmuI	ACTGGG	1 cut(s)	354
BpiI	GAAGAC	1 cut(s)	351
BplI	GAGNNNNNCTC	4 cut(s)	80, 112, 448, 480
Bpu1102I	GCTNAGC	1 cut(s)	140
BsaI	GGTCTC	1 cut(s)	286
BsaWI	WCCGGW	3 cut(s)	217, 415, 439
BsaXI	ACNNNNNCTCC	2 cut(s)	307, 337
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 329
Bse118I	RCCGGY	1 cut(s)	439
Bse1I	ACTGG	2 cut(s)	349, 405
Bse3DI	GCAATG	1 cut(s)	180
BseAI	TCCGGA	2 cut(s)	217, 415
BseGI	GGATG	3 cut(s)	248, 319, 487
BseLI	CCNNNNNNNGG	2 cut(s)	43, 329
BseMI	GCAATG	1 cut(s)	180
BseMII	CTCAG	4 cut(s)	69, 90, 131, 209
BseNI	ACTGG	2 cut(s)	349, 405
BseRI	GAGGAG	1 cut(s)	71
BsgI	GTGCAG	1 cut(s)	429
Bsh1236I	CGCG	1 cut(s)	117
BshFI	GGCC	2 cut(s)	17, 501
BshTI	ACCGGT	1 cut(s)	439
BsiSI	CCGG	3 cut(s)	218, 416, 440
BslI	CCNNNNNNNGG	2 cut(s)	43, 329
BsmAI	GTCTC	3 cut(s)	2, 100, 286
BsmBI	CGTCTC	2 cut(s)	2, 100
BsnI	GGCC	2 cut(s)	17, 501
Bso31I	GGTCTC	1 cut(s)	286
Bsp13I	TCCGGA	2 cut(s)	217, 415
Bsp1407I	TGTACA	1 cut(s)	387
Bsp143I	GATC	2 cut(s)	58, 412
Bsp1720I	GCTNAGC	1 cut(s)	140
BspACI	CCGC	2 cut(s)	117, 329
BspANI	GGCC	2 cut(s)	17, 501
BspCNI	CTCAG	4 cut(s)	68, 91, 132, 208
BspEI	TCCGGA	2 cut(s)	217, 415
BspFNI	CGCG	1 cut(s)	117
BspLI	GGNNCC	2 cut(s)	166, 334
BspPI	GGATC	1 cut(s)	407
BspQI	GCTCTTC	1 cut(s)	551
BspTNI	GGTCTC	1 cut(s)	286
BsrDI	GCAATG	1 cut(s)	180
BsrFI	RCCGGY	1 cut(s)	439
BsrGI	TGTACA	1 cut(s)	387
BsrI	ACTGG	2 cut(s)	349, 405
BssAI	RCCGGY	1 cut(s)	439
BssMI	GATC	2 cut(s)	58, 412
Bst4CI	ACNGT	2 cut(s)	169, 400
Bst6I	CTCTTC	1 cut(s)	551
BstAUI	TGTACA	1 cut(s)	387
BstDEI	CTNAG	7 cut(s)	39, 55, 99, 140, 195, 477, 552
BstF5I	GGATG	3 cut(s)	248, 319, 487
BstFNI	CGCG	1 cut(s)	117
BstKTI	GATC	2 cut(s)	61, 415
BstMAI	GTCTC	3 cut(s)	2, 100, 286
BstMBI	GATC	2 cut(s)	58, 412
BstMWI	GCNNNNNNNGC	1 cut(s)	191
BstSFI	CTRYAG	1 cut(s)	272
BstUI	CGCG	1 cut(s)	117
BstV2I	GAAGAC	1 cut(s)	351
BstX2I	RGATCY	1 cut(s)	412
BstYI	RGATCY	1 cut(s)	412
BsuI	GTATCC	1 cut(s)	261
BsuRI	GGCC	2 cut(s)	17, 501
BtsCI	GGATG	3 cut(s)	248, 319, 487
BtsIMutI	CAGTG	2 cut(s)	342, 412
Cfr10I	RCCGGY	1 cut(s)	439
Csp6I	GTAC	1 cut(s)	388
CspAI	ACCGGT	1 cut(s)	439
CviJI	RGCY	6 cut(s)	17, 139, 335, 349, 404, 501
CviKI_1	RGCY	6 cut(s)	17, 139, 335, 349, 404, 501
CviQI	GTAC	1 cut(s)	388
DdeI	CTNAG	7 cut(s)	39, 55, 99, 140, 195, 477, 552
DpnI	GATC	2 cut(s)	60, 414
DpnII	GATC	2 cut(s)	58, 412
DrdI	GACNNNNNNGTC	1 cut(s)	92
DseDI	GACNNNNNNGTC	1 cut(s)	92
Eam1104I	CTCTTC	1 cut(s)	551
EarI	CTCTTC	1 cut(s)	551
Eco147I	AGGCCT	1 cut(s)	501
Eco31I	GGTCTC	1 cut(s)	286
EcoT22I	ATGCAT	1 cut(s)	248
Esp3I	CGTCTC	2 cut(s)	2, 100
FaiI	YATR	3 cut(s)	123, 252, 286
FauI	CCCGC	2 cut(s)	110, 322
FblI	GTMKAC	1 cut(s)	519
FokI	GGATG	3 cut(s)	255, 306, 494
HaeIII	GGCC	2 cut(s)	17, 501
HapII	CCGG	3 cut(s)	218, 416, 440
HinfI	GANTC	4 cut(s)	89, 112, 419, 447
HpaII	CCGG	3 cut(s)	218, 416, 440
Hpy166II	GTNNAC	4 cut(s)	315, 390, 474, 520
Hpy188I	TCNGA	4 cut(s)	7, 58, 100, 382
Hpy188III	TCNNGA	3 cut(s)	218, 416, 508
Hpy8I	GTNNAC	4 cut(s)	315, 390, 474, 520
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	4 cut(s)	7, 37, 491, 505
HpyCH4III	ACNGT	2 cut(s)	169, 400
HpyCH4V	TGCA	4 cut(s)	246, 305, 410, 431
HpyF10VI	GCNNNNNNNGC	1 cut(s)	191
HpyF3I	CTNAG	7 cut(s)	39, 55, 99, 140, 195, 477, 552
Kpn2I	TCCGGA	2 cut(s)	217, 415
Kzo9I	GATC	2 cut(s)	58, 412
LguI	GCTCTTC	1 cut(s)	551
LmnI	GCTCC	1 cut(s)	332
LweI	GCATC	3 cut(s)	85, 233, 292
MaeIII	GTNAC	2 cut(s)	366, 460
MalI	GATC	2 cut(s)	60, 414
MboI	GATC	2 cut(s)	58, 412
MboII	GAAGA	1 cut(s)	351
MflI	RGATCY	1 cut(s)	412
MluCI	AATT	1 cut(s)	212
MlyI	GAGTC	2 cut(s)	98, 121
MnlI	CCTC	3 cut(s)	92, 129, 333
Mph1103I	ATGCAT	1 cut(s)	248
MroI	TCCGGA	2 cut(s)	217, 415
MseI	TTAA	2 cut(s)	108, 261
MspI	CCGG	3 cut(s)	218, 416, 440
MvnI	CGCG	1 cut(s)	117
MwoI	GCNNNNNNNGC	1 cut(s)	191
NdeII	GATC	2 cut(s)	58, 412
NlaIV	GGNNCC	2 cut(s)	166, 334
NmeAIII	GCCGAG	1 cut(s)	43
NsiI	ATGCAT	1 cut(s)	248
PceI	AGGCCT	1 cut(s)	501
PciSI	GCTCTTC	1 cut(s)	551
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PfeI	GAWTC	2 cut(s)	419, 447
PinAI	ACCGGT	1 cut(s)	439
PleI	GAGTC	2 cut(s)	97, 120
PpsI	GAGTC	2 cut(s)	97, 120
PspN4I	GGNNCC	2 cut(s)	166, 334
PsuI	RGATCY	1 cut(s)	412
RsaI	GTAC	1 cut(s)	389
RsaNI	GTAC	1 cut(s)	388
SapI	GCTCTTC	1 cut(s)	551
SaqAI	TTAA	2 cut(s)	108, 261
Sau3AI	GATC	2 cut(s)	58, 412
SchI	GAGTC	2 cut(s)	98, 121
SetI	ASST	3 cut(s)	48, 279, 553
SfaNI	GCATC	3 cut(s)	85, 233, 292
SfcI	CTRYAG	1 cut(s)	272
Sse9I	AATT	1 cut(s)	212
SseBI	AGGCCT	1 cut(s)	501
SsiI	CCGC	2 cut(s)	117, 329
StuI	AGGCCT	1 cut(s)	501
TaaI	ACNGT	2 cut(s)	169, 400
TaqI	TCGA	1 cut(s)	84
TasI	AATT	1 cut(s)	212
TatI	WGTACW	1 cut(s)	387
TfiI	GAWTC	2 cut(s)	419, 447
Tru1I	TTAA	2 cut(s)	108, 261
Tru9I	TTAA	2 cut(s)	108, 261
TscAI	CASTG	2 cut(s)	349, 412
TspGWI	ACGGA	2 cut(s)	82, 537
TspRI	CASTG	2 cut(s)	349, 412
XapI	RAATTY	1 cut(s)	212
XmiI	GTMKAC	1 cut(s)	519
Zsp2I	ATGCAT	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.