Belongs to the ClpA ClpB family
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| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom15g03570 |
| rosa_chinensis | RchiOBHm_Chr1g0330711 |
| rosa_multiflora | Rmu_sc0002725.1_g000018 Rmu_sc0004826.1_g000001 Rmu_sc0012388.1_g000004 Rmu_sc0032321.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00084840 Rroxscaffold_2G00084850 |
| rosa_rugosa | Rorug02G0523300 |
| rosa_samantha | Rh1AG108100 Rh1AG109100 Rh1AG109300 Rh1AG110400 Rh1AG111300 Rh1CG104100 Rh1CG105000 Rh1CG105200 Rh1CG106700 Rh1DG114200 Rh1DG114800 Rh1DG115700 Rh2BG601800 Rh2CG572500 Rh2DG612200 |
| rosa_wichuraiana | Rw4G012620 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 839, 1445 |
| Acc36I | ACCTGC | 1 cut(s) | 624 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 37 |
| AccI | GTMKAC | 1 cut(s) | 682 |
| AciI | CCGC | 3 cut(s) | 196, 300, 734 |
| AclWI | GGATC | 2 cut(s) | 161, 772 |
| AcoI | YGGCCR | 1 cut(s) | 753 |
| AcsI | RAATTY | 3 cut(s) | 899, 986, 1477 |
| AcuI | CTGAAG | 2 cut(s) | 119, 403 |
| AcyI | GRCGYC | 1 cut(s) | 290 |
| AfaI | GTAC | 8 cut(s) | 600, 784, 823, 1054, 1129, 1175, 1346, 1420 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 37, 176, 324, 733 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1468, 1500 |
| AluBI | AGCT | 4 cut(s) | 145, 950, 1248, 1509 |
| AluI | AGCT | 4 cut(s) | 145, 950, 1248, 1509 |
| Alw21I | GWGCWC | 2 cut(s) | 353, 1473 |
| AlwI | GGATC | 2 cut(s) | 161, 772 |
| Ama87I | CYCGRG | 1 cut(s) | 149 |
| AoxI | GGCC | 2 cut(s) | 185, 753 |
| ApeKI | GCWGC | 1 cut(s) | 359 |
| ApoI | RAATTY | 3 cut(s) | 899, 986, 1477 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1374, 1406 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 383 |
| AspLEI | GCGC | 1 cut(s) | 182 |
| AsuHPI | GGTGA | 2 cut(s) | 202, 211 |
| AsuII | TTCGAA | 1 cut(s) | 44 |
| AvaI | CYCGRG | 1 cut(s) | 149 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 194, 227, 1157, 1190 |
| BalI | TGGCCA | 1 cut(s) | 755 |
| Bbv12I | GWGCWC | 2 cut(s) | 353, 1473 |
| BbvI | GCAGC | 1 cut(s) | 346 |
| BccI | CCATC | 2 cut(s) | 721, 731 |
| BceAI | ACGGC | 1 cut(s) | 122 |
| BfaI | CTAG | 1 cut(s) | 158 |
| BfmI | CTRYAG | 1 cut(s) | 360 |
| BfuAI | ACCTGC | 1 cut(s) | 624 |
| BglII | AGATCT | 1 cut(s) | 802 |
| BisI | GCNGC | 1 cut(s) | 360 |
| BlsI | GCNGC | 1 cut(s) | 361 |
| BmeT110I | CYCGRG | 1 cut(s) | 149 |
| BmsI | GCATC | 4 cut(s) | 271, 355, 612, 1321 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 251, 283 |
| BpmI | CTGGAG | 1 cut(s) | 553 |
| Bpu14I | TTCGAA | 1 cut(s) | 44 |
| BsaAI | YACGTR | 2 cut(s) | 674, 1418 |
| BsaHI | GRCGYC | 1 cut(s) | 290 |
| BsaJI | CCNNGG | 2 cut(s) | 138, 285 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 37, 176, 324, 733 |
| Bse118I | RCCGGY | 1 cut(s) | 187 |
| Bse1I | ACTGG | 2 cut(s) | 536, 1303 |
| Bse3DI | GCAATG | 2 cut(s) | 237, 1307 |
| BseDI | CCNNGG | 2 cut(s) | 138, 285 |
| BseGI | GGATG | 2 cut(s) | 742, 1299 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 37, 176, 324, 733 |
| BseMI | GCAATG | 2 cut(s) | 237, 1307 |
| BseMII | CTCAG | 1 cut(s) | 233 |
| BseNI | ACTGG | 2 cut(s) | 536, 1303 |
| BseRI | GAGGAG | 1 cut(s) | 261 |
| BseXI | GCAGC | 1 cut(s) | 346 |
| BseYI | CCCAGC | 1 cut(s) | 722 |
| BshFI | GGCC | 2 cut(s) | 187, 755 |
| BsiHKAI | GWGCWC | 2 cut(s) | 353, 1473 |
| BsiHKCI | CYCGRG | 1 cut(s) | 149 |
| BsiSI | CCGG | 1 cut(s) | 188 |
| BslFI | GGGAC | 3 cut(s) | 166, 277, 540 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 37, 176, 324, 733 |
| BsmFI | GGGAC | 3 cut(s) | 166, 277, 540 |
| BsnI | GGCC | 2 cut(s) | 187, 755 |
| BsoBI | CYCGRG | 1 cut(s) | 149 |
| Bsp119I | TTCGAA | 1 cut(s) | 44 |
| Bsp1286I | GDGCHC | 2 cut(s) | 353, 1473 |
| Bsp1407I | TGTACA | 1 cut(s) | 598 |
| Bsp143I | GATC | 6 cut(s) | 51, 115, 166, 764, 802, 866 |
| BspACI | CCGC | 3 cut(s) | 196, 300, 734 |
| BspANI | GGCC | 2 cut(s) | 187, 755 |
| BspCNI | CTCAG | 1 cut(s) | 234 |
| BspHI | TCATGA | 1 cut(s) | 480 |
| BspMAI | CTGCAG | 1 cut(s) | 364 |
| BspMI | ACCTGC | 1 cut(s) | 624 |
| BspPI | GGATC | 2 cut(s) | 161, 772 |
| BspT104I | TTCGAA | 1 cut(s) | 44 |
| BsrDI | GCAATG | 2 cut(s) | 237, 1307 |
| BsrFI | RCCGGY | 1 cut(s) | 187 |
| BsrGI | TGTACA | 1 cut(s) | 598 |
| BsrI | ACTGG | 2 cut(s) | 536, 1303 |
| BssAI | RCCGGY | 1 cut(s) | 187 |
| BssECI | CCNNGG | 2 cut(s) | 138, 285 |
| BssMI | GATC | 6 cut(s) | 51, 115, 166, 764, 802, 866 |
| BssNI | GRCGYC | 1 cut(s) | 290 |
| Bst4CI | ACNGT | 2 cut(s) | 210, 773 |
| Bst6I | CTCTTC | 1 cut(s) | 317 |
| BstACI | GRCGYC | 1 cut(s) | 290 |
| BstAUI | TGTACA | 1 cut(s) | 598 |
| BstBAI | YACGTR | 2 cut(s) | 674, 1418 |
| BstBI | TTCGAA | 1 cut(s) | 44 |
| BstC8I | GCNNGC | 1 cut(s) | 1288 |
| BstDEI | CTNAG | 2 cut(s) | 242, 1142 |
| BstDSI | CCRYGG | 1 cut(s) | 138 |
| BstF5I | GGATG | 2 cut(s) | 742, 1299 |
| BstHHI | GCGC | 1 cut(s) | 182 |
| BstKTI | GATC | 6 cut(s) | 54, 118, 169, 767, 805, 869 |
| BstMBI | GATC | 6 cut(s) | 51, 115, 166, 764, 802, 866 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 193, 365 |
| BstNSI | RCATGY | 1 cut(s) | 1290 |
| BstSFI | CTRYAG | 1 cut(s) | 360 |
| BstSNI | TACGTA | 2 cut(s) | 674, 1418 |
| BstV1I | GCAGC | 1 cut(s) | 346 |
| BstX2I | RGATCY | 2 cut(s) | 764, 802 |
| BstYI | RGATCY | 2 cut(s) | 764, 802 |
| BsuRI | GGCC | 2 cut(s) | 187, 755 |
| BtgI | CCRYGG | 1 cut(s) | 138 |
| BtsCI | GGATG | 2 cut(s) | 742, 1299 |
| BtsIMutI | CAGTG | 2 cut(s) | 529, 769 |
| BveI | ACCTGC | 1 cut(s) | 624 |
| Cac8I | GCNNGC | 1 cut(s) | 1288 |
| CciI | TCATGA | 1 cut(s) | 480 |
| CfoI | GCGC | 1 cut(s) | 182 |
| Cfr10I | RCCGGY | 1 cut(s) | 187 |
| CseI | GACGC | 2 cut(s) | 279, 925 |
| Csp6I | GTAC | 8 cut(s) | 599, 783, 822, 1053, 1128, 1174, 1345, 1419 |
| CviAII | CATG | 4 cut(s) | 481, 641, 751, 1287 |
| CviQI | GTAC | 8 cut(s) | 599, 783, 822, 1053, 1128, 1174, 1345, 1419 |
| DdeI | CTNAG | 2 cut(s) | 242, 1142 |
| DpnI | GATC | 6 cut(s) | 53, 117, 168, 766, 804, 868 |
| DpnII | GATC | 6 cut(s) | 51, 115, 166, 764, 802, 866 |
| DraI | TTTAAA | 1 cut(s) | 991 |
| EaeI | YGGCCR | 1 cut(s) | 753 |
| Eam1104I | CTCTTC | 1 cut(s) | 317 |
| EarI | CTCTTC | 1 cut(s) | 317 |
| EciI | GGCGGA | 1 cut(s) | 289 |
| Eco105I | TACGTA | 2 cut(s) | 674, 1418 |
| Eco57I | CTGAAG | 2 cut(s) | 119, 403 |
| Eco88I | CYCGRG | 1 cut(s) | 149 |
| EcoRI | GAATTC | 1 cut(s) | 899 |
| EcoT22I | ATGCAT | 1 cut(s) | 1288 |
| FaeI | CATG | 4 cut(s) | 484, 644, 754, 1290 |
| FaqI | GGGAC | 3 cut(s) | 166, 277, 540 |
| FatI | CATG | 4 cut(s) | 480, 640, 750, 1286 |
| FauI | CCCGC | 1 cut(s) | 189 |
| FblI | GTMKAC | 1 cut(s) | 682 |
| Fnu4HI | GCNGC | 1 cut(s) | 360 |
| FokI | GGATG | 2 cut(s) | 749, 1286 |
| Fsp4HI | GCNGC | 1 cut(s) | 360 |
| FspBI | CTAG | 1 cut(s) | 158 |
| GlaI | GCGC | 1 cut(s) | 181 |
| GluI | GCNGC | 1 cut(s) | 360 |
| GsaI | CCCAGC | 1 cut(s) | 726 |
| GsuI | CTGGAG | 1 cut(s) | 553 |
| HaeIII | GGCC | 2 cut(s) | 187, 755 |
| HapII | CCGG | 1 cut(s) | 188 |
| HgaI | GACGC | 2 cut(s) | 279, 925 |
| HhaI | GCGC | 1 cut(s) | 182 |
| Hin1I | GRCGYC | 1 cut(s) | 290 |
| Hin1II | CATG | 4 cut(s) | 484, 644, 754, 1290 |
| Hin6I | GCGC | 1 cut(s) | 180 |
| HinP1I | GCGC | 1 cut(s) | 180 |
| HincII | GTYRAC | 1 cut(s) | 1378 |
| HindII | GTYRAC | 1 cut(s) | 1378 |
| HindIII | AAGCTT | 1 cut(s) | 948 |
| HinfI | GANTC | 4 cut(s) | 41, 237, 915, 1354 |
| HpaII | CCGG | 1 cut(s) | 188 |
| HphI | GGTGA | 2 cut(s) | 202, 211 |
| Hpy166II | GTNNAC | 7 cut(s) | 379, 599, 601, 683, 1053, 1324, 1378 |
| Hpy188I | TCNGA | 3 cut(s) | 802, 1123, 1359 |
| Hpy188III | TCNNGA | 7 cut(s) | 67, 151, 241, 337, 481, 940, 1488 |
| Hpy8I | GTNNAC | 7 cut(s) | 379, 599, 601, 683, 1053, 1324, 1378 |
| Hpy99I | CGWCG | 1 cut(s) | 1376 |
| HpyAV | CCTTC | 1 cut(s) | 320 |
| HpyCH4III | ACNGT | 2 cut(s) | 210, 773 |
| HpyCH4IV | ACGT | 4 cut(s) | 656, 673, 1371, 1417 |
| HpyCH4V | TGCA | 7 cut(s) | 230, 362, 625, 750, 1286, 1290, 1312 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 193, 365 |
| HpyF3I | CTNAG | 2 cut(s) | 242, 1142 |
| HpySE526I | ACGT | 4 cut(s) | 656, 673, 1371, 1417 |
| Hsp92I | GRCGYC | 1 cut(s) | 290 |
| Hsp92II | CATG | 4 cut(s) | 484, 644, 754, 1290 |
| HspAI | GCGC | 1 cut(s) | 180 |
| Kzo9I | GATC | 6 cut(s) | 51, 115, 166, 764, 802, 866 |
| LmnI | GCTCC | 4 cut(s) | 142, 534, 1020, 1449 |
| Lsp1109I | GCAGC | 1 cut(s) | 346 |
| LweI | GCATC | 4 cut(s) | 271, 355, 612, 1321 |
| MaeI | CTAG | 1 cut(s) | 158 |
| MaeII | ACGT | 4 cut(s) | 656, 673, 1371, 1417 |
| MaeIII | GTNAC | 5 cut(s) | 56, 392, 636, 702, 1256 |
| MalI | GATC | 6 cut(s) | 53, 117, 168, 766, 804, 868 |
| MboI | GATC | 6 cut(s) | 51, 115, 166, 764, 802, 866 |
| MboII | GAAGA | 5 cut(s) | 110, 334, 409, 708, 842 |
| MflI | RGATCY | 2 cut(s) | 764, 802 |
| MhlI | GDGCHC | 2 cut(s) | 353, 1473 |
| MlsI | TGGCCA | 1 cut(s) | 755 |
| MluNI | TGGCCA | 1 cut(s) | 755 |
| MlyI | GAGTC | 2 cut(s) | 246, 1363 |
| MnlI | CCTC | 9 cut(s) | 99, 239, 253, 280, 318, 324, 673, 864, 993 |
| Mox20I | TGGCCA | 1 cut(s) | 755 |
| Mph1103I | ATGCAT | 1 cut(s) | 1288 |
| MroXI | GAANNNNTTC | 1 cut(s) | 383 |
| MscI | TGGCCA | 1 cut(s) | 755 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1317 |
| Msp20I | TGGCCA | 1 cut(s) | 755 |
| MspI | CCGG | 1 cut(s) | 188 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 193, 365 |
| NdeII | GATC | 6 cut(s) | 51, 115, 166, 764, 802, 866 |
| NlaIII | CATG | 4 cut(s) | 484, 644, 754, 1290 |
| NmeAIII | GCCGAG | 1 cut(s) | 310 |
| NmuCI | GTSAC | 3 cut(s) | 636, 702, 1256 |
| NsiI | ATGCAT | 1 cut(s) | 1288 |
| NspI | RCATGY | 1 cut(s) | 1290 |
| NspV | TTCGAA | 1 cut(s) | 44 |
| PaeI | GCATGC | 1 cut(s) | 1290 |
| PagI | TCATGA | 1 cut(s) | 480 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 862 |
| PdmI | GAANNNNTTC | 1 cut(s) | 383 |
| PfeI | GAWTC | 2 cut(s) | 41, 915 |
| PflFI | GACNNNGTC | 1 cut(s) | 971 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 37 |
| PkrI | GCNGC | 1 cut(s) | 361 |
| PleI | GAGTC | 2 cut(s) | 245, 1362 |
| PpsI | GAGTC | 2 cut(s) | 245, 1362 |
| Ppu21I | YACGTR | 2 cut(s) | 674, 1418 |
| PsiI | TTATAA | 2 cut(s) | 839, 1445 |
| PspFI | CCCAGC | 1 cut(s) | 722 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 11, 43 |
| PstI | CTGCAG | 1 cut(s) | 364 |
| PsuI | RGATCY | 2 cut(s) | 764, 802 |
| PsyI | GACNNNGTC | 1 cut(s) | 971 |
| RsaI | GTAC | 8 cut(s) | 600, 784, 823, 1054, 1129, 1175, 1346, 1420 |
| RsaNI | GTAC | 8 cut(s) | 599, 783, 822, 1053, 1128, 1174, 1345, 1419 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1317 |
| SatI | GCNGC | 1 cut(s) | 360 |
| Sau3AI | GATC | 6 cut(s) | 51, 115, 166, 764, 802, 866 |
| SchI | GAGTC | 2 cut(s) | 246, 1363 |
| SduI | GDGCHC | 2 cut(s) | 353, 1473 |
| SfaNI | GCATC | 4 cut(s) | 271, 355, 612, 1321 |
| SfcI | CTRYAG | 1 cut(s) | 360 |
| SfuI | TTCGAA | 1 cut(s) | 44 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1317 |
| SnaBI | TACGTA | 2 cut(s) | 674, 1418 |
| SphI | GCATGC | 1 cut(s) | 1290 |
| SsiI | CCGC | 3 cut(s) | 196, 300, 734 |
| SspI | AATATT | 4 cut(s) | 548, 559, 908, 1264 |
| SspMI | CTAG | 1 cut(s) | 158 |
| TaaI | ACNGT | 2 cut(s) | 210, 773 |
| TaiI | ACGT | 4 cut(s) | 659, 676, 1374, 1420 |
| TaqI | TCGA | 8 cut(s) | 44, 66, 165, 279, 543, 966, 998, 1250 |
| TatI | WGTACW | 2 cut(s) | 598, 1052 |
| TfiI | GAWTC | 2 cut(s) | 41, 915 |
| TscAI | CASTG | 2 cut(s) | 536, 776 |
| TseFI | GTSAC | 3 cut(s) | 636, 702, 1256 |
| TseI | GCWGC | 1 cut(s) | 359 |
| Tsp45I | GTSAC | 3 cut(s) | 636, 702, 1256 |
| TspDTI | ATGAA | 6 cut(s) | 17, 92, 110, 237, 907, 1018 |
| TspGWI | ACGGA | 2 cut(s) | 1014, 1289 |
| TspRI | CASTG | 2 cut(s) | 536, 776 |
| Tth111I | GACNNNGTC | 1 cut(s) | 971 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 37 |
| XapI | RAATTY | 3 cut(s) | 899, 986, 1477 |
| XceI | RCATGY | 1 cut(s) | 1290 |
| XmiI | GTMKAC | 1 cut(s) | 682 |
| XmnI | GAANNNNTTC | 1 cut(s) | 383 |
| XspI | CTAG | 1 cut(s) | 158 |
| Zsp2I | ATGCAT | 1 cut(s) | 1288 |