Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0007541

Physical Location & Seq

Genomic Coordinates Forward (+)

82180870 .. 82184721

Gene Structure 3852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG601800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGTTGATGAACAGCATGGGAAGGACAAGATTGTGGTTTCGTTCAACTGTGAGACACTGAAATCTGACAAAGCAGCAGAAGATCATATCAGCAAGTTTTTGACCAAACTAGCTGGCCTAGATGCTGTTTTGGAACGAGTCCAGAAGAGAACTACAGACCGCAAGATGAAAATCCAAGTGAGTGATGCAATTGTGCAGTTTCTTGGAAGTCTTGGCTACGATCCAAACTACGGTGCTAGGCCAGTGAAGCGAGTGATTCAGCAATATGTAGAAAATAAGCTTGCCAAGGGCATCTTGAGGGGAGAGTTCAAAGAAGAAGACACCATTTTGGTCGACACAGAGGTCACAGCGTTTGCCAATGGCCAACTACCCCAGCAAAAGCTAGTCTTCAAGACGCATTCTGACGTGTTCAATGTTTTCCTTCAAATTTTAGATGATGGGAGAGTAACTGACTCACAGGGCCGCACTGTGAGTTTCACCAACACTGTGATCATTATGACCTCAAATGTTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006996 GO:0008150 GO:0009266 GO:0009408 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04213 map04213

Pfam Domains

Protein Families

AAA AAA_2 ClpB_D2-small Clp_N

Protein Analysis

171

Amino Acids

19.15

Weight (kDa)

6.84

Isoelectric Point (pI)

22.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ClpB_D2-small	PF10431	42 - 111	3.5e-22	C-terminal, D2-small domain, of ClpB protein
AAA_2	PF07724	131 - 171	2.4e-14	AAA domain (Cdc48 subfamily)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0007541)

Species	Orthologous Gene IDs
pyrus_communis	pycom15g03570
rosa_chinensis	RchiOBHm_Chr1g0330711
rosa_multiflora	Rmu_sc0002725.1_g000018 Rmu_sc0004826.1_g000001 Rmu_sc0012388.1_g000004 Rmu_sc0032321.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084840 Rroxscaffold_2G00084850
rosa_rugosa	Rorug02G0523300
rosa_samantha	Rh1AG108100 Rh1AG109100 Rh1AG109300 Rh1AG110400 Rh1AG111300 Rh1CG104100 Rh1CG105000 Rh1CG105200 Rh1CG106700 Rh1DG114200 Rh1DG114800 Rh1DG115700 Rh2BG601800 Rh2CG572500 Rh2DG612200
rosa_wichuraiana	Rw4G012620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	341
AccI	GTMKAC	1 cut(s)	333
AciI	CCGC	2 cut(s)	160, 463
AclWI	GGATC	1 cut(s)	215
AcoI	YGGCCR	1 cut(s)	361
AcsI	RAATTY	1 cut(s)	426
AfiI	CCNNNNNNNGG	1 cut(s)	230
AflIII	ACRYGT	1 cut(s)	405
AgsI	TTSAA	5 cut(s)	46, 310, 391, 412, 425
AjiI	CACGTC	1 cut(s)	406
AluBI	AGCT	3 cut(s)	113, 280, 382
AluI	AGCT	3 cut(s)	113, 280, 382
Alw26I	GTCTC	1 cut(s)	47
AlwI	GGATC	1 cut(s)	215
AoxI	GGCC	4 cut(s)	115, 239, 361, 460
ApeKI	GCWGC	1 cut(s)	74
ApoI	RAATTY	1 cut(s)	426
AspS9I	GGNCC	1 cut(s)	460
AsuHPI	GGTGA	1 cut(s)	469
BalI	TGGCCA	1 cut(s)	363
BbsI	GAAGAC	2 cut(s)	324, 379
BbvI	GCAGC	1 cut(s)	86
BccI	CCATC	1 cut(s)	431
BclI	TGATCA	1 cut(s)	489
BcoDI	GTCTC	1 cut(s)	47
BfaI	CTAG	4 cut(s)	110, 119, 237, 383
BfmI	CTRYAG	1 cut(s)	153
BisI	GCNGC	2 cut(s)	75, 463
BlsI	GCNGC	2 cut(s)	76, 464
BmgBI	CACGTC	1 cut(s)	406
BmgT120I	GGNCC	1 cut(s)	460
BmsI	GCATC	3 cut(s)	112, 175, 300
BpiI	GAAGAC	2 cut(s)	324, 379
BpuEI	CTTGAG	1 cut(s)	316
BsaBI	GATNNNNATC	1 cut(s)	170
BsaJI	CCNNGG	1 cut(s)	285
Bsc4I	CCNNNNNNNGG	1 cut(s)	230
Bse1I	ACTGG	1 cut(s)	242
Bse8I	GATNNNNATC	1 cut(s)	170
BseDI	CCNNGG	1 cut(s)	285
BseJI	GATNNNNATC	1 cut(s)	170
BseLI	CCNNNNNNNGG	1 cut(s)	230
BseNI	ACTGG	1 cut(s)	242
BseXI	GCAGC	1 cut(s)	86
BseYI	CCCAGC	1 cut(s)	372
BsgI	GTGCAG	1 cut(s)	215
BshFI	GGCC	4 cut(s)	117, 241, 363, 462
BslI	CCNNNNNNNGG	1 cut(s)	230
BsmAI	GTCTC	1 cut(s)	47
BsmI	GAATGC	1 cut(s)	397
BsnI	GGCC	4 cut(s)	117, 241, 363, 462
Bsp143I	GATC	3 cut(s)	82, 220, 489
BspACI	CCGC	2 cut(s)	160, 463
BspANI	GGCC	4 cut(s)	117, 241, 363, 462
BspPI	GGATC	1 cut(s)	215
BsrI	ACTGG	1 cut(s)	242
BssECI	CCNNGG	1 cut(s)	285
BssMI	GATC	3 cut(s)	82, 220, 489
BssT1I	CCWWGG	1 cut(s)	285
Bst4CI	ACNGT	4 cut(s)	50, 233, 469, 487
Bst6I	CTCTTC	1 cut(s)	140
BstC8I	GCNNGC	2 cut(s)	115, 282
BstKTI	GATC	3 cut(s)	85, 223, 492
BstMAI	GTCTC	1 cut(s)	47
BstMBI	GATC	3 cut(s)	82, 220, 489
BstMWI	GCNNNNNNNGC	1 cut(s)	247
BstSFI	CTRYAG	1 cut(s)	153
BstV1I	GCAGC	1 cut(s)	86
BstV2I	GAAGAC	2 cut(s)	324, 379
BsuRI	GGCC	4 cut(s)	117, 241, 363, 462
BtrI	CACGTC	1 cut(s)	406
BtsIMutI	CAGTG	4 cut(s)	56, 249, 465, 483
Cac8I	GCNNGC	2 cut(s)	115, 282
Cfr13I	GGNCC	1 cut(s)	460
CseI	GACGC	1 cut(s)	403
CviAII	CATG	1 cut(s)	17
CviJI	RGCY	8 cut(s)	113, 117, 216, 241, 280, 363, 382, 462
CviKI_1	RGCY	8 cut(s)	113, 117, 216, 241, 280, 363, 382, 462
DpnI	GATC	3 cut(s)	84, 222, 491
DpnII	GATC	3 cut(s)	82, 220, 489
DrdI	GACNNNNNNGTC	1 cut(s)	341
DseDI	GACNNNNNNGTC	1 cut(s)	341
EaeI	YGGCCR	1 cut(s)	361
Eam1104I	CTCTTC	1 cut(s)	140
EarI	CTCTTC	1 cut(s)	140
Eco130I	CCWWGG	1 cut(s)	285
EcoT14I	CCWWGG	1 cut(s)	285
ErhI	CCWWGG	1 cut(s)	285
FaeI	CATG	1 cut(s)	20
FaiI	YATR	4 cut(s)	18, 87, 267, 497
FalI	AAGNNNNNCTT	4 cut(s)	278, 310, 371, 403
FatI	CATG	1 cut(s)	16
FbaI	TGATCA	1 cut(s)	489
FblI	GTMKAC	1 cut(s)	333
Fnu4HI	GCNGC	2 cut(s)	75, 463
Fsp4HI	GCNGC	2 cut(s)	75, 463
FspBI	CTAG	4 cut(s)	110, 119, 237, 383
GluI	GCNGC	2 cut(s)	75, 463
GsaI	CCCAGC	1 cut(s)	376
HaeIII	GGCC	4 cut(s)	117, 241, 363, 462
HgaI	GACGC	1 cut(s)	403
Hin1II	CATG	1 cut(s)	20
HincII	GTYRAC	1 cut(s)	334
HindII	GTYRAC	1 cut(s)	334
HindIII	AAGCTT	1 cut(s)	278
HinfI	GANTC	3 cut(s)	138, 256, 452
HphI	GGTGA	1 cut(s)	469
Hpy166II	GTNNAC	1 cut(s)	334
Hpy188I	TCNGA	2 cut(s)	67, 403
Hpy188III	TCNNGA	3 cut(s)	142, 295, 391
Hpy8I	GTNNAC	1 cut(s)	334
HpyAV	CCTTC	2 cut(s)	16, 431
HpyCH4III	ACNGT	4 cut(s)	50, 233, 469, 487
HpyCH4IV	ACGT	1 cut(s)	405
HpyCH4V	TGCA	2 cut(s)	188, 196
HpyF10VI	GCNNNNNNNGC	1 cut(s)	247
HpySE526I	ACGT	1 cut(s)	405
Hsp92II	CATG	1 cut(s)	20
Ksp22I	TGATCA	1 cut(s)	489
Kzo9I	GATC	3 cut(s)	82, 220, 489
LpnPI	CCDG	5 cut(s)	99, 155, 255, 386, 443
Lsp1109I	GCAGC	1 cut(s)	86
LweI	GCATC	3 cut(s)	112, 175, 300
MaeI	CTAG	4 cut(s)	110, 119, 237, 383
MaeII	ACGT	1 cut(s)	405
MaeIII	GTNAC	2 cut(s)	343, 445
MalI	GATC	3 cut(s)	84, 222, 491
MboI	GATC	3 cut(s)	82, 220, 489
MboII	GAAGA	5 cut(s)	92, 157, 326, 329, 379
MfeI	CAATTG	1 cut(s)	189
MlsI	TGGCCA	1 cut(s)	363
MluCI	AATT	2 cut(s)	189, 426
MluNI	TGGCCA	1 cut(s)	363
MlyI	GAGTC	2 cut(s)	147, 446
MnlI	CCTC	3 cut(s)	291, 334, 511
Mox20I	TGGCCA	1 cut(s)	363
MscI	TGGCCA	1 cut(s)	363
MseI	TTAA	1 cut(s)	514
Msp20I	TGGCCA	1 cut(s)	363
MunI	CAATTG	1 cut(s)	189
Mva1269I	GAATGC	1 cut(s)	397
MwoI	GCNNNNNNNGC	1 cut(s)	247
NdeII	GATC	3 cut(s)	82, 220, 489
NlaIII	CATG	1 cut(s)	20
NmuCI	GTSAC	1 cut(s)	343
PctI	GAATGC	1 cut(s)	397
PfeI	GAWTC	1 cut(s)	256
PkrI	GCNGC	2 cut(s)	76, 464
PleI	GAGTC	2 cut(s)	146, 446
PpsI	GAGTC	2 cut(s)	146, 446
PspFI	CCCAGC	1 cut(s)	372
PspPI	GGNCC	1 cut(s)	460
SalI	GTCGAC	1 cut(s)	332
SaqAI	TTAA	1 cut(s)	514
SatI	GCNGC	2 cut(s)	75, 463
Sau3AI	GATC	3 cut(s)	82, 220, 489
Sau96I	GGNCC	1 cut(s)	460
SchI	GAGTC	2 cut(s)	147, 446
SetI	ASST	6 cut(s)	115, 282, 345, 384, 408, 503
SfaNI	GCATC	3 cut(s)	112, 175, 300
SfcI	CTRYAG	1 cut(s)	153
SmlI	CTYRAG	1 cut(s)	295
SmoI	CTYRAG	1 cut(s)	295
Sse9I	AATT	2 cut(s)	189, 426
SsiI	CCGC	2 cut(s)	160, 463
SspMI	CTAG	4 cut(s)	110, 119, 237, 383
StyI	CCWWGG	1 cut(s)	285
TaaI	ACNGT	4 cut(s)	50, 233, 469, 487
TaiI	ACGT	1 cut(s)	408
TaqI	TCGA	1 cut(s)	333
TasI	AATT	2 cut(s)	189, 426
TauI	GCSGC	1 cut(s)	465
TfiI	GAWTC	1 cut(s)	256
Tru1I	TTAA	1 cut(s)	514
Tru9I	TTAA	1 cut(s)	514
TscAI	CASTG	4 cut(s)	63, 249, 472, 490
TseFI	GTSAC	1 cut(s)	343
TseI	GCWGC	1 cut(s)	74
Tsp45I	GTSAC	1 cut(s)	343
TspDTI	ATGAA	2 cut(s)	24, 182
TspRI	CASTG	4 cut(s)	63, 249, 472, 490
XapI	RAATTY	1 cut(s)	426
XmiI	GTMKAC	1 cut(s)	333
XspI	CTAG	4 cut(s)	110, 119, 237, 383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.