Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0007541

Physical Location & Seq

Genomic Coordinates Forward (+)

19123471 .. 19124413

Gene Structure 943 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG110400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGACTCGAATACGATCAATTAAAGAAGAGATTGATGGAGTAAACCAAGATATGGAAGCTGCTGAAAGGGCATATGACCTAAGTCGTGCTGCTGAGCTCAAATATGGAACTCTAATGTCCCTGCAACGCCACTTAGTAGAGGCTGAGAAAAACCTTTCTGAGTACCAAAAGTCTGGAAAATCTTTTCTACGAGAAGAGGTCACTGATCTTGATATTGCTGAGATGAACCGGGTAAAAGATAGGGTGAAGCAAAAGAAAATCCAGCTTCATTATACAAAGGAAGCTGTGGAGCTTCTTGGTAGATTGGACTTGGATCTGAAACTTTGGAGCCAGGCCAGTCAAGAGGGTAATACAGCAGCTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04213 map04213

Pfam Domains

Protein Families

AAA AAA_2 ClpB_D2-small Clp_N

Protein Analysis

121

Amino Acids

13.88

Weight (kDa)

5.76

Isoelectric Point (pI)

38.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007541)

Species	Orthologous Gene IDs
pyrus_communis	pycom15g03570
rosa_chinensis	RchiOBHm_Chr1g0330711
rosa_multiflora	Rmu_sc0002725.1_g000018 Rmu_sc0004826.1_g000001 Rmu_sc0012388.1_g000004 Rmu_sc0032321.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084840 Rroxscaffold_2G00084850
rosa_rugosa	Rorug02G0523300
rosa_samantha	Rh1AG108100 Rh1AG109100 Rh1AG109300 Rh1AG110400 Rh1AG111300 Rh1CG104100 Rh1CG105000 Rh1CG105200 Rh1CG106700 Rh1DG114200 Rh1DG114800 Rh1DG115700 Rh2BG601800 Rh2CG572500 Rh2DG612200
rosa_wichuraiana	Rw4G012620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	52
AclWI	GGATC	1 cut(s)	321
AfaI	GTAC	1 cut(s)	164
AfiI	CCNNNNNNNGG	1 cut(s)	52
AjnI	CCWGG	1 cut(s)	330
AluBI	AGCT	6 cut(s)	59, 97, 265, 284, 292, 359
AluI	AGCT	6 cut(s)	59, 97, 265, 284, 292, 359
Alw21I	GWGCWC	1 cut(s)	99
AlwI	GGATC	1 cut(s)	321
AlwNI	CAGNNNCTG	1 cut(s)	359
AoxI	GGCC	1 cut(s)	333
ApeKI	GCWGC	3 cut(s)	59, 89, 356
AsuC2I	CCSGG	1 cut(s)	230
AsuHPI	GGTGA	1 cut(s)	256
BanII	GRGCYC	1 cut(s)	99
Bbv12I	GWGCWC	1 cut(s)	99
BbvI	GCAGC	2 cut(s)	46, 76
BccI	CCATC	1 cut(s)	29
BciT130I	CCWGG	1 cut(s)	332
BcnI	CCSGG	1 cut(s)	230
BisI	GCNGC	3 cut(s)	60, 90, 357
BlpI	GCTNAGC	1 cut(s)	93
BlsI	GCNGC	3 cut(s)	61, 91, 358
Bme1390I	CCNGG	2 cut(s)	230, 332
BmiI	GGNNCC	1 cut(s)	329
BmrFI	CCNGG	2 cut(s)	230, 332
BoxI	GACNNNNGTC	1 cut(s)	81
Bpu1102I	GCTNAGC	1 cut(s)	93
BpuMI	CCSGG	1 cut(s)	230
Bsc4I	CCNNNNNNNGG	1 cut(s)	52
Bse1I	ACTGG	1 cut(s)	336
BseBI	CCWGG	1 cut(s)	332
BseLI	CCNNNNNNNGG	1 cut(s)	52
BseMII	CTCAG	4 cut(s)	84, 135, 150, 210
BseNI	ACTGG	1 cut(s)	336
BseXI	GCAGC	2 cut(s)	46, 76
BshFI	GGCC	1 cut(s)	335
BsiHKAI	GWGCWC	1 cut(s)	99
BsiSI	CCGG	1 cut(s)	229
BslFI	GGGAC	1 cut(s)	103
BslI	CCNNNNNNNGG	1 cut(s)	52
BsmFI	GGGAC	1 cut(s)	103
BsnI	GGCC	1 cut(s)	335
Bsp1286I	GDGCHC	1 cut(s)	99
Bsp143I	GATC	3 cut(s)	14, 205, 313
Bsp1720I	GCTNAGC	1 cut(s)	93
BspANI	GGCC	1 cut(s)	335
BspCNI	CTCAG	4 cut(s)	85, 136, 151, 211
BspLI	GGNNCC	1 cut(s)	329
BspPI	GGATC	1 cut(s)	321
BsrI	ACTGG	1 cut(s)	336
BssMI	GATC	3 cut(s)	14, 205, 313
Bst2UI	CCWGG	1 cut(s)	332
Bst6I	CTCTTC	2 cut(s)	21, 189
BstDEI	CTNAG	6 cut(s)	80, 93, 133, 144, 159, 219
BstKTI	GATC	3 cut(s)	17, 208, 316
BstMBI	GATC	3 cut(s)	14, 205, 313
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstNI	CCWGG	1 cut(s)	332
BstPAI	GACNNNNGTC	1 cut(s)	81
BstSCI	CCNGG	2 cut(s)	228, 330
BstV1I	GCAGC	2 cut(s)	46, 76
BstX2I	RGATCY	1 cut(s)	313
BstXI	CCANNNNNNTGG	1 cut(s)	173
BstYI	RGATCY	1 cut(s)	313
BsuRI	GGCC	1 cut(s)	335
BtsIMutI	CAGTG	1 cut(s)	201
CaiI	CAGNNNCTG	1 cut(s)	359
Csp6I	GTAC	1 cut(s)	163
CviJI	RGCY	9 cut(s)	59, 97, 143, 265, 284, 292, 330, 335, 359
CviKI_1	RGCY	9 cut(s)	59, 97, 143, 265, 284, 292, 330, 335, 359
CviQI	GTAC	1 cut(s)	163
DdeI	CTNAG	6 cut(s)	80, 93, 133, 144, 159, 219
DpnI	GATC	3 cut(s)	16, 207, 315
DpnII	GATC	3 cut(s)	14, 205, 313
Eam1104I	CTCTTC	2 cut(s)	21, 189
EarI	CTCTTC	2 cut(s)	21, 189
Ecl136II	GAGCTC	1 cut(s)	97
Eco24I	GRGCYC	1 cut(s)	99
Eco53kI	GAGCTC	1 cut(s)	97
EcoICRI	GAGCTC	1 cut(s)	97
EcoRII	CCWGG	1 cut(s)	330
EcoT38I	GRGCYC	1 cut(s)	99
FaiI	YATR	5 cut(s)	53, 73, 75, 105, 273
FaqI	GGGAC	1 cut(s)	103
FauNDI	CATATG	1 cut(s)	73
Fnu4HI	GCNGC	3 cut(s)	60, 90, 357
FriOI	GRGCYC	1 cut(s)	99
Fsp4HI	GCNGC	3 cut(s)	60, 90, 357
GluI	GCNGC	3 cut(s)	60, 90, 357
HaeIII	GGCC	1 cut(s)	335
HapII	CCGG	1 cut(s)	229
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	1 cut(s)	229
HphI	GGTGA	1 cut(s)	256
Hpy166II	GTNNAC	1 cut(s)	43
Hpy188I	TCNGA	2 cut(s)	160, 318
Hpy188III	TCNNGA	3 cut(s)	174, 209, 341
Hpy8I	GTNNAC	1 cut(s)	43
HpyCH4V	TGCA	1 cut(s)	124
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
HpyF3I	CTNAG	6 cut(s)	80, 93, 133, 144, 159, 219
Kzo9I	GATC	3 cut(s)	14, 205, 313
LmnI	GCTCC	2 cut(s)	289, 327
LpnPI	CCDG	8 cut(s)	134, 159, 242, 275, 317, 344, 345, 349
Lsp1109I	GCAGC	2 cut(s)	46, 76
MaeIII	GTNAC	1 cut(s)	199
MalI	GATC	3 cut(s)	16, 207, 315
MboI	GATC	3 cut(s)	14, 205, 313
MboII	GAAGA	2 cut(s)	38, 206
MflI	RGATCY	1 cut(s)	313
MhlI	GDGCHC	1 cut(s)	99
MluCI	AATT	1 cut(s)	18
MnlI	CCTC	3 cut(s)	133, 190, 337
MseI	TTAA	1 cut(s)	21
MspA1I	CMGCKG	1 cut(s)	359
MspI	CCGG	1 cut(s)	229
MspR9I	CCNGG	2 cut(s)	230, 332
MvaI	CCWGG	1 cut(s)	332
MwoI	GCNNNNNNNGC	1 cut(s)	68
NciI	CCSGG	1 cut(s)	230
NdeI	CATATG	1 cut(s)	73
NdeII	GATC	3 cut(s)	14, 205, 313
NlaIV	GGNNCC	1 cut(s)	329
NmuCI	GTSAC	1 cut(s)	199
PflMI	CCANNNNNTGG	1 cut(s)	52
PkrI	GCNGC	3 cut(s)	61, 91, 358
PshAI	GACNNNNGTC	1 cut(s)	81
Psp124BI	GAGCTC	1 cut(s)	99
Psp6I	CCWGG	1 cut(s)	330
PspGI	CCWGG	1 cut(s)	330
PspN4I	GGNNCC	1 cut(s)	329
PstNI	CAGNNNCTG	1 cut(s)	359
PsuI	RGATCY	1 cut(s)	313
PvuII	CAGCTG	1 cut(s)	359
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
SacI	GAGCTC	1 cut(s)	99
SaqAI	TTAA	1 cut(s)	21
SatI	GCNGC	3 cut(s)	60, 90, 357
Sau3AI	GATC	3 cut(s)	14, 205, 313
ScrFI	CCNGG	2 cut(s)	230, 332
SduI	GDGCHC	1 cut(s)	99
SetI	ASST	9 cut(s)	61, 81, 99, 156, 201, 267, 286, 294, 361
Sse9I	AATT	1 cut(s)	18
SstI	GAGCTC	1 cut(s)	99
StyD4I	CCNGG	2 cut(s)	228, 330
TaqI	TCGA	1 cut(s)	7
TasI	AATT	1 cut(s)	18
Tru1I	TTAA	1 cut(s)	21
Tru9I	TTAA	1 cut(s)	21
TscAI	CASTG	1 cut(s)	208
TseFI	GTSAC	1 cut(s)	199
TseI	GCWGC	3 cut(s)	59, 89, 356
Tsp45I	GTSAC	1 cut(s)	199
TspDTI	ATGAA	2 cut(s)	239, 257
TspRI	CASTG	1 cut(s)	208
Van91I	CCANNNNNTGG	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.