Belongs to the ClpA ClpB family
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| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom15g03570 |
| rosa_chinensis | RchiOBHm_Chr1g0330711 |
| rosa_multiflora | Rmu_sc0002725.1_g000018 Rmu_sc0004826.1_g000001 Rmu_sc0012388.1_g000004 Rmu_sc0032321.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00084840 Rroxscaffold_2G00084850 |
| rosa_rugosa | Rorug02G0523300 |
| rosa_samantha | Rh1AG108100 Rh1AG109100 Rh1AG109300 Rh1AG110400 Rh1AG111300 Rh1CG104100 Rh1CG105000 Rh1CG105200 Rh1CG106700 Rh1DG114200 Rh1DG114800 Rh1DG115700 Rh2BG601800 Rh2CG572500 Rh2DG612200 |
| rosa_wichuraiana | Rw4G012620 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 52 |
| AciI | CCGC | 2 cut(s) | 264, 295 |
| AfaI | GTAC | 2 cut(s) | 164, 410 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 52 |
| AgsI | TTSAA | 1 cut(s) | 387 |
| AluBI | AGCT | 9 cut(s) | 59, 97, 228, 233, 249, 254, 348, 353, 369 |
| AluI | AGCT | 9 cut(s) | 59, 97, 228, 233, 249, 254, 348, 353, 369 |
| Alw21I | GWGCWC | 5 cut(s) | 99, 251, 350, 371, 510 |
| ApeKI | GCWGC | 3 cut(s) | 59, 89, 439 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 449 |
| AsuC2I | CCSGG | 1 cut(s) | 376 |
| AsuHPI | GGTGA | 1 cut(s) | 390 |
| BanII | GRGCYC | 5 cut(s) | 99, 251, 309, 350, 371 |
| BauI | CACGAG | 1 cut(s) | 456 |
| Bbv12I | GWGCWC | 5 cut(s) | 99, 251, 350, 371, 510 |
| BbvCI | CCTCAGC | 1 cut(s) | 219 |
| BbvI | GCAGC | 3 cut(s) | 46, 76, 426 |
| BccI | CCATC | 2 cut(s) | 29, 455 |
| BceAI | ACGGC | 1 cut(s) | 251 |
| BciVI | GTATCC | 1 cut(s) | 467 |
| BcnI | CCSGG | 1 cut(s) | 376 |
| BfaI | CTAG | 1 cut(s) | 517 |
| BfuI | GTATCC | 1 cut(s) | 467 |
| BisI | GCNGC | 3 cut(s) | 60, 90, 440 |
| BlpI | GCTNAGC | 5 cut(s) | 93, 229, 250, 349, 370 |
| BlsI | GCNGC | 3 cut(s) | 61, 91, 441 |
| Bme1390I | CCNGG | 1 cut(s) | 376 |
| BmrFI | CCNGG | 1 cut(s) | 376 |
| BmsI | GCATC | 1 cut(s) | 406 |
| BoxI | GACNNNNGTC | 1 cut(s) | 81 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 212, 244, 238, 270 |
| Bpu10I | CCTNAGC | 1 cut(s) | 219 |
| Bpu1102I | GCTNAGC | 5 cut(s) | 93, 229, 250, 349, 370 |
| BpuMI | CCSGG | 1 cut(s) | 376 |
| BsaJI | CCNNGG | 1 cut(s) | 401 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 52 |
| Bse1I | ACTGG | 1 cut(s) | 482 |
| BseDI | CCNNGG | 1 cut(s) | 401 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 52 |
| BseMII | CTCAG | 8 cut(s) | 84, 135, 150, 210, 243, 264, 363, 384 |
| BseNI | ACTGG | 1 cut(s) | 482 |
| BseXI | GCAGC | 3 cut(s) | 46, 76, 426 |
| BsiHKAI | GWGCWC | 5 cut(s) | 99, 251, 350, 371, 510 |
| BsiSI | CCGG | 3 cut(s) | 244, 364, 376 |
| BslFI | GGGAC | 1 cut(s) | 103 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 52 |
| BsmFI | GGGAC | 1 cut(s) | 103 |
| Bsp1286I | GDGCHC | 6 cut(s) | 99, 251, 309, 350, 371, 510 |
| Bsp143I | GATC | 3 cut(s) | 14, 205, 389 |
| Bsp1720I | GCTNAGC | 5 cut(s) | 93, 229, 250, 349, 370 |
| Bsp19I | CCATGG | 1 cut(s) | 401 |
| BspACI | CCGC | 2 cut(s) | 264, 295 |
| BspCNI | CTCAG | 8 cut(s) | 85, 136, 151, 211, 242, 263, 362, 383 |
| BsrI | ACTGG | 1 cut(s) | 482 |
| BssECI | CCNNGG | 1 cut(s) | 401 |
| BssMI | GATC | 3 cut(s) | 14, 205, 389 |
| BssSI | CACGAG | 1 cut(s) | 456 |
| BssT1I | CCWWGG | 1 cut(s) | 401 |
| Bst2BI | CACGAG | 1 cut(s) | 456 |
| Bst4CI | ACNGT | 1 cut(s) | 489 |
| Bst6I | CTCTTC | 3 cut(s) | 21, 189, 463 |
| BstDSI | CCRYGG | 1 cut(s) | 401 |
| BstKTI | GATC | 3 cut(s) | 17, 208, 392 |
| BstMBI | GATC | 3 cut(s) | 14, 205, 389 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 68 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 81 |
| BstSCI | CCNGG | 1 cut(s) | 374 |
| BstV1I | GCAGC | 3 cut(s) | 46, 76, 426 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 173 |
| BsuI | GTATCC | 1 cut(s) | 467 |
| BtgI | CCRYGG | 1 cut(s) | 401 |
| BtsIMutI | CAGTG | 1 cut(s) | 201 |
| Csp6I | GTAC | 2 cut(s) | 163, 409 |
| CviAII | CATG | 3 cut(s) | 329, 402, 511 |
| CviQI | GTAC | 2 cut(s) | 163, 409 |
| DpnI | GATC | 3 cut(s) | 16, 207, 391 |
| DpnII | GATC | 3 cut(s) | 14, 205, 389 |
| Eam1104I | CTCTTC | 3 cut(s) | 21, 189, 463 |
| EarI | CTCTTC | 3 cut(s) | 21, 189, 463 |
| EciI | GGCGGA | 1 cut(s) | 253 |
| Ecl136II | GAGCTC | 4 cut(s) | 97, 249, 348, 369 |
| Eco130I | CCWWGG | 1 cut(s) | 401 |
| Eco24I | GRGCYC | 5 cut(s) | 99, 251, 309, 350, 371 |
| Eco32I | GATATC | 1 cut(s) | 292 |
| Eco53kI | GAGCTC | 4 cut(s) | 97, 249, 348, 369 |
| EcoICRI | GAGCTC | 4 cut(s) | 97, 249, 348, 369 |
| EcoRV | GATATC | 1 cut(s) | 292 |
| EcoT14I | CCWWGG | 1 cut(s) | 401 |
| EcoT38I | GRGCYC | 5 cut(s) | 99, 251, 309, 350, 371 |
| ErhI | CCWWGG | 1 cut(s) | 401 |
| FaeI | CATG | 3 cut(s) | 332, 405, 514 |
| FaiI | YATR | 8 cut(s) | 53, 73, 75, 105, 330, 335, 403, 512 |
| FaqI | GGGAC | 1 cut(s) | 103 |
| FatI | CATG | 3 cut(s) | 328, 401, 510 |
| FauNDI | CATATG | 1 cut(s) | 73 |
| Fnu4HI | GCNGC | 3 cut(s) | 60, 90, 440 |
| FriOI | GRGCYC | 5 cut(s) | 99, 251, 309, 350, 371 |
| Fsp4HI | GCNGC | 3 cut(s) | 60, 90, 440 |
| FspBI | CTAG | 1 cut(s) | 517 |
| GluI | GCNGC | 3 cut(s) | 60, 90, 440 |
| HapII | CCGG | 3 cut(s) | 244, 364, 376 |
| Hin1II | CATG | 3 cut(s) | 332, 405, 514 |
| HinfI | GANTC | 1 cut(s) | 4 |
| HpaII | CCGG | 3 cut(s) | 244, 364, 376 |
| HphI | GGTGA | 1 cut(s) | 390 |
| Hpy166II | GTNNAC | 1 cut(s) | 43 |
| Hpy188I | TCNGA | 1 cut(s) | 160 |
| Hpy188III | TCNNGA | 4 cut(s) | 174, 209, 387, 458 |
| Hpy8I | GTNNAC | 1 cut(s) | 43 |
| HpyAV | CCTTC | 1 cut(s) | 281 |
| HpyCH4III | ACNGT | 1 cut(s) | 489 |
| HpyCH4V | TGCA | 2 cut(s) | 124, 302 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 68 |
| Hsp92II | CATG | 3 cut(s) | 332, 405, 514 |
| Kzo9I | GATC | 3 cut(s) | 14, 205, 389 |
| LmnI | GCTCC | 4 cut(s) | 246, 281, 366, 505 |
| LpnPI | CCDG | 7 cut(s) | 134, 159, 257, 339, 377, 389, 463 |
| Lsp1109I | GCAGC | 3 cut(s) | 46, 76, 426 |
| LweI | GCATC | 1 cut(s) | 406 |
| MaeI | CTAG | 1 cut(s) | 517 |
| MaeIII | GTNAC | 2 cut(s) | 199, 378 |
| MalI | GATC | 3 cut(s) | 16, 207, 391 |
| MboI | GATC | 3 cut(s) | 14, 205, 389 |
| MboII | GAAGA | 4 cut(s) | 38, 206, 277, 480 |
| MfeI | CAATTG | 1 cut(s) | 495 |
| MhlI | GDGCHC | 6 cut(s) | 99, 251, 309, 350, 371, 510 |
| MluCI | AATT | 4 cut(s) | 18, 393, 445, 495 |
| MnlI | CCTC | 5 cut(s) | 133, 190, 214, 399, 464 |
| MroXI | GAANNNNTTC | 1 cut(s) | 449 |
| MseI | TTAA | 1 cut(s) | 21 |
| MspA1I | CMGCKG | 1 cut(s) | 353 |
| MspI | CCGG | 3 cut(s) | 244, 364, 376 |
| MspR9I | CCNGG | 1 cut(s) | 376 |
| MunI | CAATTG | 1 cut(s) | 495 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 68 |
| NciI | CCSGG | 1 cut(s) | 376 |
| NcoI | CCATGG | 1 cut(s) | 401 |
| NdeI | CATATG | 1 cut(s) | 73 |
| NdeII | GATC | 3 cut(s) | 14, 205, 389 |
| NlaIII | CATG | 3 cut(s) | 332, 405, 514 |
| NmuCI | GTSAC | 2 cut(s) | 199, 378 |
| PdmI | GAANNNNTTC | 1 cut(s) | 449 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 52 |
| PkrI | GCNGC | 3 cut(s) | 61, 91, 441 |
| PshAI | GACNNNNGTC | 1 cut(s) | 81 |
| Psp124BI | GAGCTC | 4 cut(s) | 99, 251, 350, 371 |
| PvuII | CAGCTG | 1 cut(s) | 353 |
| RsaI | GTAC | 2 cut(s) | 164, 410 |
| RsaNI | GTAC | 2 cut(s) | 163, 409 |
| SacI | GAGCTC | 4 cut(s) | 99, 251, 350, 371 |
| SaqAI | TTAA | 1 cut(s) | 21 |
| SatI | GCNGC | 3 cut(s) | 60, 90, 440 |
| Sau3AI | GATC | 3 cut(s) | 14, 205, 389 |
| ScrFI | CCNGG | 1 cut(s) | 376 |
| SduI | GDGCHC | 6 cut(s) | 99, 251, 309, 350, 371, 510 |
| SfaNI | GCATC | 1 cut(s) | 406 |
| Sse9I | AATT | 4 cut(s) | 18, 393, 445, 495 |
| SsiI | CCGC | 2 cut(s) | 264, 295 |
| SspMI | CTAG | 1 cut(s) | 517 |
| SstI | GAGCTC | 4 cut(s) | 99, 251, 350, 371 |
| StyD4I | CCNGG | 1 cut(s) | 374 |
| StyI | CCWWGG | 1 cut(s) | 401 |
| TaaI | ACNGT | 1 cut(s) | 489 |
| TaqI | TCGA | 4 cut(s) | 7, 235, 256, 288 |
| TasI | AATT | 4 cut(s) | 18, 393, 445, 495 |
| Tru1I | TTAA | 1 cut(s) | 21 |
| Tru9I | TTAA | 1 cut(s) | 21 |
| TscAI | CASTG | 1 cut(s) | 208 |
| TseFI | GTSAC | 2 cut(s) | 199, 378 |
| TseI | GCWGC | 3 cut(s) | 59, 89, 439 |
| Tsp45I | GTSAC | 2 cut(s) | 199, 378 |
| TspRI | CASTG | 1 cut(s) | 208 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 52 |
| XmnI | GAANNNNTTC | 1 cut(s) | 449 |
| XspI | CTAG | 1 cut(s) | 517 |