Belongs to the ClpA ClpB family
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| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom15g03570 |
| rosa_chinensis | RchiOBHm_Chr1g0330711 |
| rosa_multiflora | Rmu_sc0002725.1_g000018 Rmu_sc0004826.1_g000001 Rmu_sc0012388.1_g000004 Rmu_sc0032321.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00084840 Rroxscaffold_2G00084850 |
| rosa_rugosa | Rorug02G0523300 |
| rosa_samantha | Rh1AG108100 Rh1AG109100 Rh1AG109300 Rh1AG110400 Rh1AG111300 Rh1CG104100 Rh1CG105000 Rh1CG105200 Rh1CG106700 Rh1DG114200 Rh1DG114800 Rh1DG115700 Rh2BG601800 Rh2CG572500 Rh2DG612200 |
| rosa_wichuraiana | Rw4G012620 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 270 |
| AfaI | GTAC | 1 cut(s) | 113 |
| AjnI | CCWGG | 1 cut(s) | 279 |
| AluBI | AGCT | 6 cut(s) | 8, 46, 214, 233, 241, 308 |
| AluI | AGCT | 6 cut(s) | 8, 46, 214, 233, 241, 308 |
| Alw21I | GWGCWC | 1 cut(s) | 48 |
| AlwI | GGATC | 1 cut(s) | 270 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 308 |
| AoxI | GGCC | 1 cut(s) | 282 |
| ApeKI | GCWGC | 3 cut(s) | 8, 38, 305 |
| AsuC2I | CCSGG | 1 cut(s) | 179 |
| AsuHPI | GGTGA | 1 cut(s) | 205 |
| BanII | GRGCYC | 1 cut(s) | 48 |
| Bbv12I | GWGCWC | 1 cut(s) | 48 |
| BbvI | GCAGC | 1 cut(s) | 25 |
| BciT130I | CCWGG | 1 cut(s) | 281 |
| BcnI | CCSGG | 1 cut(s) | 179 |
| BisI | GCNGC | 3 cut(s) | 9, 39, 306 |
| BlpI | GCTNAGC | 1 cut(s) | 42 |
| BlsI | GCNGC | 3 cut(s) | 10, 40, 307 |
| Bme1390I | CCNGG | 2 cut(s) | 179, 281 |
| BmiI | GGNNCC | 1 cut(s) | 278 |
| BmrFI | CCNGG | 2 cut(s) | 179, 281 |
| BoxI | GACNNNNGTC | 1 cut(s) | 30 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 42 |
| BpuMI | CCSGG | 1 cut(s) | 179 |
| Bse1I | ACTGG | 1 cut(s) | 285 |
| BseBI | CCWGG | 1 cut(s) | 281 |
| BseMII | CTCAG | 4 cut(s) | 33, 84, 99, 159 |
| BseNI | ACTGG | 1 cut(s) | 285 |
| BseXI | GCAGC | 1 cut(s) | 25 |
| BshFI | GGCC | 1 cut(s) | 284 |
| BsiHKAI | GWGCWC | 1 cut(s) | 48 |
| BsiSI | CCGG | 1 cut(s) | 178 |
| BslFI | GGGAC | 1 cut(s) | 52 |
| BsmFI | GGGAC | 1 cut(s) | 52 |
| BsnI | GGCC | 1 cut(s) | 284 |
| Bsp1286I | GDGCHC | 1 cut(s) | 48 |
| Bsp143I | GATC | 2 cut(s) | 154, 262 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 42 |
| BspANI | GGCC | 1 cut(s) | 284 |
| BspCNI | CTCAG | 4 cut(s) | 34, 85, 100, 160 |
| BspLI | GGNNCC | 1 cut(s) | 278 |
| BspPI | GGATC | 1 cut(s) | 270 |
| BsrI | ACTGG | 1 cut(s) | 285 |
| BssMI | GATC | 2 cut(s) | 154, 262 |
| Bst2UI | CCWGG | 1 cut(s) | 281 |
| Bst6I | CTCTTC | 1 cut(s) | 138 |
| BstDEI | CTNAG | 6 cut(s) | 29, 42, 82, 93, 108, 168 |
| BstKTI | GATC | 2 cut(s) | 157, 265 |
| BstMBI | GATC | 2 cut(s) | 154, 262 |
| BstNI | CCWGG | 1 cut(s) | 281 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 30 |
| BstSCI | CCNGG | 2 cut(s) | 177, 279 |
| BstV1I | GCAGC | 1 cut(s) | 25 |
| BstX2I | RGATCY | 1 cut(s) | 262 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 122 |
| BstYI | RGATCY | 1 cut(s) | 262 |
| BsuRI | GGCC | 1 cut(s) | 284 |
| BtsIMutI | CAGTG | 1 cut(s) | 150 |
| CaiI | CAGNNNCTG | 1 cut(s) | 308 |
| Csp6I | GTAC | 1 cut(s) | 112 |
| CviJI | RGCY | 9 cut(s) | 8, 46, 92, 214, 233, 241, 279, 284, 308 |
| CviKI_1 | RGCY | 9 cut(s) | 8, 46, 92, 214, 233, 241, 279, 284, 308 |
| CviQI | GTAC | 1 cut(s) | 112 |
| DdeI | CTNAG | 6 cut(s) | 29, 42, 82, 93, 108, 168 |
| DpnI | GATC | 2 cut(s) | 156, 264 |
| DpnII | GATC | 2 cut(s) | 154, 262 |
| Eam1104I | CTCTTC | 1 cut(s) | 138 |
| EarI | CTCTTC | 1 cut(s) | 138 |
| Ecl136II | GAGCTC | 1 cut(s) | 46 |
| Eco24I | GRGCYC | 1 cut(s) | 48 |
| Eco53kI | GAGCTC | 1 cut(s) | 46 |
| EcoICRI | GAGCTC | 1 cut(s) | 46 |
| EcoRII | CCWGG | 1 cut(s) | 279 |
| EcoT38I | GRGCYC | 1 cut(s) | 48 |
| FaiI | YATR | 4 cut(s) | 22, 24, 54, 222 |
| FaqI | GGGAC | 1 cut(s) | 52 |
| Fnu4HI | GCNGC | 3 cut(s) | 9, 39, 306 |
| FriOI | GRGCYC | 1 cut(s) | 48 |
| Fsp4HI | GCNGC | 3 cut(s) | 9, 39, 306 |
| GluI | GCNGC | 3 cut(s) | 9, 39, 306 |
| HaeIII | GGCC | 1 cut(s) | 284 |
| HapII | CCGG | 1 cut(s) | 178 |
| HpaII | CCGG | 1 cut(s) | 178 |
| HphI | GGTGA | 1 cut(s) | 205 |
| Hpy188I | TCNGA | 2 cut(s) | 109, 267 |
| Hpy188III | TCNNGA | 3 cut(s) | 123, 158, 290 |
| HpyCH4V | TGCA | 1 cut(s) | 73 |
| HpyF3I | CTNAG | 6 cut(s) | 29, 42, 82, 93, 108, 168 |
| Kzo9I | GATC | 2 cut(s) | 154, 262 |
| LmnI | GCTCC | 2 cut(s) | 238, 276 |
| LpnPI | CCDG | 7 cut(s) | 83, 108, 191, 266, 293, 294, 298 |
| Lsp1109I | GCAGC | 1 cut(s) | 25 |
| MaeIII | GTNAC | 1 cut(s) | 148 |
| MalI | GATC | 2 cut(s) | 156, 264 |
| MboI | GATC | 2 cut(s) | 154, 262 |
| MboII | GAAGA | 1 cut(s) | 155 |
| MflI | RGATCY | 1 cut(s) | 262 |
| MhlI | GDGCHC | 1 cut(s) | 48 |
| MnlI | CCTC | 3 cut(s) | 82, 139, 286 |
| MspA1I | CMGCKG | 1 cut(s) | 308 |
| MspI | CCGG | 1 cut(s) | 178 |
| MspR9I | CCNGG | 2 cut(s) | 179, 281 |
| MvaI | CCWGG | 1 cut(s) | 281 |
| NciI | CCSGG | 1 cut(s) | 179 |
| NdeII | GATC | 2 cut(s) | 154, 262 |
| NlaIV | GGNNCC | 1 cut(s) | 278 |
| NmuCI | GTSAC | 1 cut(s) | 148 |
| PkrI | GCNGC | 3 cut(s) | 10, 40, 307 |
| PshAI | GACNNNNGTC | 1 cut(s) | 30 |
| Psp124BI | GAGCTC | 1 cut(s) | 48 |
| Psp6I | CCWGG | 1 cut(s) | 279 |
| PspGI | CCWGG | 1 cut(s) | 279 |
| PspN4I | GGNNCC | 1 cut(s) | 278 |
| PstNI | CAGNNNCTG | 1 cut(s) | 308 |
| PsuI | RGATCY | 1 cut(s) | 262 |
| PvuII | CAGCTG | 1 cut(s) | 308 |
| RsaI | GTAC | 1 cut(s) | 113 |
| RsaNI | GTAC | 1 cut(s) | 112 |
| SacI | GAGCTC | 1 cut(s) | 48 |
| SatI | GCNGC | 3 cut(s) | 9, 39, 306 |
| Sau3AI | GATC | 2 cut(s) | 154, 262 |
| ScrFI | CCNGG | 2 cut(s) | 179, 281 |
| SduI | GDGCHC | 1 cut(s) | 48 |
| SetI | ASST | 9 cut(s) | 10, 30, 48, 105, 150, 216, 235, 243, 310 |
| SstI | GAGCTC | 1 cut(s) | 48 |
| StyD4I | CCNGG | 2 cut(s) | 177, 279 |
| TaqI | TCGA | 1 cut(s) | 210 |
| TscAI | CASTG | 1 cut(s) | 157 |
| TseFI | GTSAC | 1 cut(s) | 148 |
| TseI | GCWGC | 3 cut(s) | 8, 38, 305 |
| Tsp45I | GTSAC | 1 cut(s) | 148 |
| TspDTI | ATGAA | 2 cut(s) | 188, 206 |
| TspRI | CASTG | 1 cut(s) | 157 |