ATPase family associated with various cellular activities (AAA)
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom15g03570 |
| rosa_chinensis | RchiOBHm_Chr1g0330711 |
| rosa_multiflora | Rmu_sc0002725.1_g000018 Rmu_sc0004826.1_g000001 Rmu_sc0012388.1_g000004 Rmu_sc0032321.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00084840 Rroxscaffold_2G00084850 |
| rosa_rugosa | Rorug02G0523300 |
| rosa_samantha | Rh1AG108100 Rh1AG109100 Rh1AG109300 Rh1AG110400 Rh1AG111300 Rh1CG104100 Rh1CG105000 Rh1CG105200 Rh1CG106700 Rh1DG114200 Rh1DG114800 Rh1DG115700 Rh2BG601800 Rh2CG572500 Rh2DG612200 |
| rosa_wichuraiana | Rw4G012620 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 88 |
| AcuI | CTGAAG | 1 cut(s) | 30 |
| AfaI | GTAC | 3 cut(s) | 7, 41, 200 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 88 |
| AgsI | TTSAA | 1 cut(s) | 46 |
| AluBI | AGCT | 2 cut(s) | 95, 133 |
| AluI | AGCT | 2 cut(s) | 95, 133 |
| Alw21I | GWGCWC | 1 cut(s) | 135 |
| ApeKI | GCWGC | 2 cut(s) | 95, 125 |
| BanII | GRGCYC | 1 cut(s) | 135 |
| Bbv12I | GWGCWC | 1 cut(s) | 135 |
| BbvCI | CCTCAGC | 1 cut(s) | 255 |
| BbvI | GCAGC | 2 cut(s) | 82, 112 |
| BccI | CCATC | 1 cut(s) | 65 |
| BisI | GCNGC | 2 cut(s) | 96, 126 |
| BlpI | GCTNAGC | 1 cut(s) | 129 |
| BlsI | GCNGC | 2 cut(s) | 97, 127 |
| BoxI | GACNNNNGTC | 1 cut(s) | 117 |
| Bpu10I | CCTNAGC | 1 cut(s) | 255 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 129 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 88 |
| Bse3DI | GCAATG | 1 cut(s) | 249 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 88 |
| BseMI | GCAATG | 1 cut(s) | 249 |
| BseMII | CTCAG | 5 cut(s) | 120, 171, 183, 186, 246 |
| BseXI | GCAGC | 2 cut(s) | 82, 112 |
| BsiHKAI | GWGCWC | 1 cut(s) | 135 |
| BslFI | GGGAC | 1 cut(s) | 139 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 88 |
| BsmFI | GGGAC | 1 cut(s) | 139 |
| Bsp1286I | GDGCHC | 1 cut(s) | 135 |
| Bsp143I | GATC | 1 cut(s) | 241 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 129 |
| BspCNI | CTCAG | 5 cut(s) | 121, 172, 182, 187, 247 |
| BsrDI | GCAATG | 1 cut(s) | 249 |
| BssMI | GATC | 1 cut(s) | 241 |
| Bst6I | CTCTTC | 1 cut(s) | 225 |
| BstDEI | CTNAG | 6 cut(s) | 116, 129, 169, 180, 195, 255 |
| BstKTI | GATC | 1 cut(s) | 244 |
| BstMBI | GATC | 1 cut(s) | 241 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 104 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 117 |
| BstV1I | GCAGC | 2 cut(s) | 82, 112 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 209 |
| BtsIMutI | CAGTG | 1 cut(s) | 237 |
| Csp6I | GTAC | 3 cut(s) | 6, 40, 199 |
| CviJI | RGCY | 3 cut(s) | 95, 133, 179 |
| CviKI_1 | RGCY | 3 cut(s) | 95, 133, 179 |
| CviQI | GTAC | 3 cut(s) | 6, 40, 199 |
| DdeI | CTNAG | 6 cut(s) | 116, 129, 169, 180, 195, 255 |
| DpnI | GATC | 1 cut(s) | 243 |
| DpnII | GATC | 1 cut(s) | 241 |
| Eam1104I | CTCTTC | 1 cut(s) | 225 |
| EarI | CTCTTC | 1 cut(s) | 225 |
| Ecl136II | GAGCTC | 1 cut(s) | 133 |
| Eco24I | GRGCYC | 1 cut(s) | 135 |
| Eco53kI | GAGCTC | 1 cut(s) | 133 |
| Eco57I | CTGAAG | 1 cut(s) | 30 |
| EcoICRI | GAGCTC | 1 cut(s) | 133 |
| EcoT38I | GRGCYC | 1 cut(s) | 135 |
| FaiI | YATR | 6 cut(s) | 89, 109, 111, 141, 269, 271 |
| FaqI | GGGAC | 1 cut(s) | 139 |
| FauNDI | CATATG | 1 cut(s) | 109 |
| Fnu4HI | GCNGC | 2 cut(s) | 96, 126 |
| FriOI | GRGCYC | 1 cut(s) | 135 |
| Fsp4HI | GCNGC | 2 cut(s) | 96, 126 |
| GluI | GCNGC | 2 cut(s) | 96, 126 |
| Hpy166II | GTNNAC | 4 cut(s) | 6, 40, 79, 265 |
| Hpy188I | TCNGA | 1 cut(s) | 196 |
| Hpy188III | TCNNGA | 2 cut(s) | 210, 245 |
| Hpy8I | GTNNAC | 4 cut(s) | 6, 40, 79, 265 |
| HpyAV | CCTTC | 1 cut(s) | 40 |
| HpyCH4V | TGCA | 2 cut(s) | 64, 160 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 104 |
| HpyF3I | CTNAG | 6 cut(s) | 116, 129, 169, 180, 195, 255 |
| Kzo9I | GATC | 1 cut(s) | 241 |
| LpnPI | CCDG | 2 cut(s) | 170, 195 |
| Lsp1109I | GCAGC | 2 cut(s) | 82, 112 |
| MaeIII | GTNAC | 1 cut(s) | 235 |
| MalI | GATC | 1 cut(s) | 243 |
| MboI | GATC | 1 cut(s) | 241 |
| MboII | GAAGA | 2 cut(s) | 23, 242 |
| MhlI | GDGCHC | 1 cut(s) | 135 |
| MnlI | CCTC | 4 cut(s) | 19, 169, 226, 250 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 104 |
| NdeI | CATATG | 1 cut(s) | 109 |
| NdeII | GATC | 1 cut(s) | 241 |
| NmuCI | GTSAC | 1 cut(s) | 235 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 88 |
| PkrI | GCNGC | 2 cut(s) | 97, 127 |
| PshAI | GACNNNNGTC | 1 cut(s) | 117 |
| Psp124BI | GAGCTC | 1 cut(s) | 135 |
| RsaI | GTAC | 3 cut(s) | 7, 41, 200 |
| RsaNI | GTAC | 3 cut(s) | 6, 40, 199 |
| SacI | GAGCTC | 1 cut(s) | 135 |
| SatI | GCNGC | 2 cut(s) | 96, 126 |
| Sau3AI | GATC | 1 cut(s) | 241 |
| SduI | GDGCHC | 1 cut(s) | 135 |
| SetI | ASST | 6 cut(s) | 97, 117, 135, 192, 237, 261 |
| SgeI | CNNG | 8 cut(s) | 31, 55, 95, 134, 169, 222, 239, 257 |
| SstI | GAGCTC | 1 cut(s) | 135 |
| TatI | WGTACW | 2 cut(s) | 5, 39 |
| TscAI | CASTG | 1 cut(s) | 244 |
| TseFI | GTSAC | 1 cut(s) | 235 |
| TseI | GCWGC | 2 cut(s) | 95, 125 |
| Tsp45I | GTSAC | 1 cut(s) | 235 |
| TspRI | CASTG | 1 cut(s) | 244 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 88 |